Gchil1704.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1704.t1
Unique NameGchil1704.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length184
Homology
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BLAST of Gchil1704.t1 vs. uniprot
Match: A0A2V3J601_9FLOR (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J601_9FLOR)

HSP 1 Score: 170 bits (431), Expect = 1.130e-49
Identity = 84/180 (46.67%), Postives = 115/180 (63.89%), Query Frame = 0 
Query:    1 MTFVATTAHEFSKVGTRQADNFALCDARPLNNNNSIKVKVLTFERADCLARLGHGHYKAHEDLQRSIQNISKCLKQLNTSLQIIEASEEDETMKYAMDLADYAYEDAASALCVTCGFKCGGDFSPMIEHVKRIHMNRNPDEEADRLNEFVKSNAWRVCGMCATAFLDSEDLVEHRRKFHN 180
            + FVA TAHE +KVG R+ D+ ALCDARP+  +    V+VLT E+  CLA  G+  Y+AH DL  SI+ + +CL+Q     +I + SEE+  M   + LA+ A  +AASA C TC F+CGG+F+ MIEH+KR+H+  +  EE  R+ EF   N W +CG C  AFLD  D V H+ + HN
Sbjct:   65 LMFVANTAHELTKVGGREPDDHALCDARPMAKDR-FAVEVLTPEQNGCLANFGNFQYRAHLDLHHSIRQVIECLRQAGVHFRIFKESEEERIMDCTLTLAELACGEAASASCRTCRFQCGGNFTSMIEHIKRVHLKLDEVEEDSRVVEFAGRNPWWICGKCRMAFLDHNDFVRHQDETHN 243
The following BLAST results are available for this feature:
BLAST of Gchil1704.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J601_9FLOR1.130e-4946.67C2H2-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 158..179
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 156..183
score: 9.577168

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1843948..1844499 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1704.t1Gchil1704.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004403_pilon 1843948..1844499 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1704.t1 ID=Gchil1704.t1|Name=Gchil1704.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=184bp
MTFVATTAHEFSKVGTRQADNFALCDARPLNNNNSIKVKVLTFERADCLA
RLGHGHYKAHEDLQRSIQNISKCLKQLNTSLQIIEASEEDETMKYAMDLA
DYAYEDAASALCVTCGFKCGGDFSPMIEHVKRIHMNRNPDEEADRLNEFV
KSNAWRVCGMCATAFLDSEDLVEHRRKFHNATE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type