Gchil1498.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil1498.t1
Unique Name	Gchil1498.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	309

Homology

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BLAST of Gchil1498.t1 vs. uniprot
Match: A0A2V3J1P3_9FLOR (Transcription initiation factor TFIID subunit 8 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1P3_9FLOR)

HSP 1 Score: 379 bits (973), Expect = 3.200e-129
Identity = 200/305 (65.57%), Postives = 238/305 (78.03%), Query Frame = 0

Query:    1 MAEGVDAFTHHLMRVACAQIVYATAENVSSKKSLTKHAPKKQPVSASTISVTNSVADSLADIAKAFIERLSNTSTRFTAHNGRTLSNVMDVLHAVEWLSHHTRSGVKDLVKYAMYTEVPFPYKVPSFPASVPVASKPDDLYVNTEESNDSAMKSYVETWMPPFPSPHTYIATPVY-TANGRKKDALDVGETRRAVEKSLAQLKDSQRKDNDTTSLLAAXAAAVLDNPFLAPPVSGSKKIYDEDLADPPRDLVESGYPLDASTTIDSNMKDVSEVSGKSSSNVQKKQRVERILAEAGKELEDPDLL 304
            MA+GV+AF HHLMRV CAQIVYATAENVSSKKSLTK+APKKQPVSASTISVT SV D+ AD+A+AF E L   +  +T H GRT S+  DV  AVE LSH T S +KDLVKYAM+TEVPFPY+VP FPA  P + KP+DLYV +EE ++   K Y+E WMPP PSPHTYIAT VY T N +KKDA+++GE RRAVEKSLAQLK++QRKD          AAAV DNPFLAPPV G+ ++YDE+L D PRDL+E  Y  +A+   DSNMKDVSE+  K++++ QKKQRVERILAEAG ELEDP+L+
Sbjct:    1 MADGVEAFAHHLMRVVCAQIVYATAENVSSKKSLTKNAPKKQPVSASTISVTESVIDAFADVAEAFAETLGRAANNYTEHAGRTSSSTDDVFLAVEALSHGTHSTMKDLVKYAMFTEVPFPYQVPEFPAPPPPSKKPEDLYVRSEEHSEPPQKPYIEPWMPPMPSPHTYIATAVYSTTNNKKKDAVEIGERRRAVEKSLAQLKEAQRKDXXXXXXXXX-AAAVPDNPFLAPPVIGNSRVYDENLVDGPRDLIEDAYANNANAITDSNMKDVSEIVSKTNASDQKKQRVERILAEAGNELEDPELI 304

The following BLAST results are available for this feature:

BLAST of Gchil1498.t1 vs. uniprot

BLAST of Gchil1498.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J1P3_9FLOR	3.200e-129	65.57	Transcription initiation factor TFIID subunit 8 n=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006565	Bromodomain associated domain	SMART	SM00576	17neu3	coord: 6..104 e-value: 2.9E-4 score: 30.2
IPR019473	Transcription factor TFIID, subunit 8, C-terminal	PFAM	PF10406	TAF8_C	coord: 155..201 e-value: 2.1E-11 score: 44.2
IPR019473	Transcription factor TFIID, subunit 8, C-terminal	CDD	cd08049	TAF8	coord: 154..202 e-value: 9.42083E-10 score: 51.5047
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 2..117 e-value: 5.9E-9 score: 37.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..308
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..281
None	No IPR available	PANTHER	PTHR46338:SF1	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8	coord: 5..274
IPR037818	Transcription initiation factor TFIID subunit 8	PANTHER	PTHR46338	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8	coord: 5..274

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:403761..404687 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1498.t1	Gchil1498.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004403_pilon 403761..404687 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil1498.t1 ID=Gchil1498.t1|Name=Gchil1498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=309bp
MAEGVDAFTHHLMRVACAQIVYATAENVSSKKSLTKHAPKKQPVSASTIS
VTNSVADSLADIAKAFIERLSNTSTRFTAHNGRTLSNVMDVLHAVEWLSH
HTRSGVKDLVKYAMYTEVPFPYKVPSFPASVPVASKPDDLYVNTEESNDS
AMKSYVETWMPPFPSPHTYIATPVYTANGRKKDALDVGETRRAVEKSLAQ
LKDSQRKDNDTTSLLAAAAAAVLDNPFLAPPVSGSKKIYDEDLADPPRDL
VESGYPLDASTTIDSNMKDVSEVSGKSSSNVQKKQRVERILAEAGKELED
PDLLTSGH*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006565	BTP
IPR019473	TFIID_su8_C
IPR009072	Histone-fold
IPR037818	TAF8