Gchil1498.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1498.t1
Unique Name	Gchil1498.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	309

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:403761..404687 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN07558
PFAMs	Bromo_TP,TAF8_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14649
KEGG Pathway	ko03022,map03022
Evalue	3.29e-14
EggNOG OGs	KOG2389@1\|root,KOG2389@2759\|Eukaryota,37K2F@33090\|Viridiplantae,3G9QF@35493\|Streptophyta
Description	Transcription initiation factor TFIID subunit
COG category	K
BRITE	ko00000,ko00001,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1498	Gchil1498	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 403761..404687 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1498.t1.start1	Gchil1498.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 403761..403763 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1498.t1.CDS1	Gchil1498.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 403761..404687 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1498.t1.exon1	Gchil1498.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 403761..404687 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1498.t1.stop1	Gchil1498.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 404685..404687 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1498.t1	Gchil1498.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 403761..404687 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:403761..404687+
coding sequence from alignment at tig00004403_pilon:403761..404687+

mRNA sequence

>Gchil1498.t1 ID=Gchil1498.t1|Name=Gchil1498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=309bp
MAEGVDAFTHHLMRVACAQIVYATAENVSSKKSLTKHAPKKQPVSASTIS
VTNSVADSLADIAKAFIERLSNTSTRFTAHNGRTLSNVMDVLHAVEWLSH
HTRSGVKDLVKYAMYTEVPFPYKVPSFPASVPVASKPDDLYVNTEESNDS
AMKSYVETWMPPFPSPHTYIATPVYTANGRKKDALDVGETRRAVEKSLAQ
LKDSQRKDNDTTSLLAAAAAAVLDNPFLAPPVSGSKKIYDEDLADPPRDL
VESGYPLDASTTIDSNMKDVSEVSGKSSSNVQKKQRVERILAEAGKELED
PDLLTSGH*

spliced messenger RNA

>Gchil1498.t1 ID=Gchil1498.t1|Name=Gchil1498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00004403_pilon:403761..404687+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGAAGGAGTGGACGCTTTCACGCATCATCTCATGCGCGTTGCGTG
TGCCCAAATTGTGTATGCAACTGCTGAAAATGTTTCTTCGAAGAAAAGTC
TCACGAAACACGCACCGAAAAAGCAACCCGTATCTGCTTCTACAATATCC
GTCACCAATAGCGTTGCTGATTCTTTAGCTGACATAGCAAAGGCTTTCAT
TGAGCGCCTGAGCAACACGTCTACAAGGTTCACTGCACACAACGGCCGAA
CCTTGTCCAACGTAATGGATGTGCTACACGCTGTGGAGTGGCTCTCACAC
CACACCCGGTCCGGAGTCAAGGATCTTGTAAAGTATGCTATGTATACAGA
GGTTCCGTTTCCGTACAAGGTTCCATCGTTCCCTGCTTCCGTACCAGTCG
CGTCCAAGCCAGACGATCTGTATGTGAATACTGAGGAATCTAATGATTCA
GCAATGAAGAGCTATGTCGAGACATGGATGCCGCCTTTCCCAAGTCCGCA
CACCTACATCGCAACTCCCGTGTATACTGCGAACGGAAGAAAAAAAGATG
CTTTAGATGTTGGTGAAACGCGAAGAGCAGTTGAAAAATCCTTGGCGCAA
CTCAAAGATTCTCAGAGGAAAGACAATGATACCACTTCATTGTTGGCCGC
CGCGGCTGCTGCCGTCTTGGACAACCCTTTCCTCGCTCCTCCGGTAAGCG
GAAGCAAAAAGATTTACGACGAAGACCTGGCTGACCCTCCCCGGGATTTG
GTCGAATCCGGATATCCCCTTGATGCGAGTACGACAATCGATTCAAATAT
GAAGGATGTTTCCGAAGTTTCCGGCAAGTCTAGTTCAAACGTGCAAAAGA
AACAAAGAGTTGAGCGCATACTTGCAGAAGCGGGTAAAGAATTAGAAGAT
CCCGATCTTTTAACTTCTGGACACTAG

protein sequence of Gchil1498.t1

>Gchil1498.t1 ID=Gchil1498.t1|Name=Gchil1498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=309bp
MAEGVDAFTHHLMRVACAQIVYATAENVSSKKSLTKHAPKKQPVSASTIS
VTNSVADSLADIAKAFIERLSNTSTRFTAHNGRTLSNVMDVLHAVEWLSH
HTRSGVKDLVKYAMYTEVPFPYKVPSFPASVPVASKPDDLYVNTEESNDS
AMKSYVETWMPPFPSPHTYIATPVYTANGRKKDALDVGETRRAVEKSLAQ
LKDSQRKDNDTTSLLAAAAAAVLDNPFLAPPVSGSKKIYDEDLADPPRDL
VESGYPLDASTTIDSNMKDVSEVSGKSSSNVQKKQRVERILAEAGKELED
PDLLTSGH*

mRNA from alignment at tig00004403_pilon:403761..404687+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1498.t1 ID=Gchil1498.t1|Name=Gchil1498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00004403_pilon:403761..404687+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAAGGAGTGGACGCTTTCACGCATCATCTCATGCGCGTTGCGTG
TGCCCAAATTGTGTATGCAACTGCTGAAAATGTTTCTTCGAAGAAAAGTC
TCACGAAACACGCACCGAAAAAGCAACCCGTATCTGCTTCTACAATATCC
GTCACCAATAGCGTTGCTGATTCTTTAGCTGACATAGCAAAGGCTTTCAT
TGAGCGCCTGAGCAACACGTCTACAAGGTTCACTGCACACAACGGCCGAA
CCTTGTCCAACGTAATGGATGTGCTACACGCTGTGGAGTGGCTCTCACAC
CACACCCGGTCCGGAGTCAAGGATCTTGTAAAGTATGCTATGTATACAGA
GGTTCCGTTTCCGTACAAGGTTCCATCGTTCCCTGCTTCCGTACCAGTCG
CGTCCAAGCCAGACGATCTGTATGTGAATACTGAGGAATCTAATGATTCA
GCAATGAAGAGCTATGTCGAGACATGGATGCCGCCTTTCCCAAGTCCGCA
CACCTACATCGCAACTCCCGTGTATACTGCGAACGGAAGAAAAAAAGATG
CTTTAGATGTTGGTGAAACGCGAAGAGCAGTTGAAAAATCCTTGGCGCAA
CTCAAAGATTCTCAGAGGAAAGACAATGATACCACTTCATTGTTGGCCGC
CGCGGCTGCTGCCGTCTTGGACAACCCTTTCCTCGCTCCTCCGGTAAGCG
GAAGCAAAAAGATTTACGACGAAGACCTGGCTGACCCTCCCCGGGATTTG
GTCGAATCCGGATATCCCCTTGATGCGAGTACGACAATCGATTCAAATAT
GAAGGATGTTTCCGAAGTTTCCGGCAAGTCTAGTTCAAACGTGCAAAAGA
AACAAAGAGTTGAGCGCATACTTGCAGAAGCGGGTAAAGAATTAGAAGAT
CCCGATCTTTTAACTTCTGGACACTAG

Coding sequence (CDS) from alignment at tig00004403_pilon:403761..404687+

>Gchil1498.t1 ID=Gchil1498.t1|Name=Gchil1498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00004403_pilon:403761..404687+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCGAAGGAGTGGACGCTTTCACGCATCATCTCATGCGCGTTGCGTG
TGCCCAAATTGTGTATGCAACTGCTGAAAATGTTTCTTCGAAGAAAAGTC
TCACGAAACACGCACCGAAAAAGCAACCCGTATCTGCTTCTACAATATCC
GTCACCAATAGCGTTGCTGATTCTTTAGCTGACATAGCAAAGGCTTTCAT
TGAGCGCCTGAGCAACACGTCTACAAGGTTCACTGCACACAACGGCCGAA
CCTTGTCCAACGTAATGGATGTGCTACACGCTGTGGAGTGGCTCTCACAC
CACACCCGGTCCGGAGTCAAGGATCTTGTAAAGTATGCTATGTATACAGA
GGTTCCGTTTCCGTACAAGGTTCCATCGTTCCCTGCTTCCGTACCAGTCG
CGTCCAAGCCAGACGATCTGTATGTGAATACTGAGGAATCTAATGATTCA
GCAATGAAGAGCTATGTCGAGACATGGATGCCGCCTTTCCCAAGTCCGCA
CACCTACATCGCAACTCCCGTGTATACTGCGAACGGAAGAAAAAAAGATG
CTTTAGATGTTGGTGAAACGCGAAGAGCAGTTGAAAAATCCTTGGCGCAA
CTCAAAGATTCTCAGAGGAAAGACAATGATACCACTTCATTGTTGGCCGC
CGCGGCTGCTGCCGTCTTGGACAACCCTTTCCTCGCTCCTCCGGTAAGCG
GAAGCAAAAAGATTTACGACGAAGACCTGGCTGACCCTCCCCGGGATTTG
GTCGAATCCGGATATCCCCTTGATGCGAGTACGACAATCGATTCAAATAT
GAAGGATGTTTCCGAAGTTTCCGGCAAGTCTAGTTCAAACGTGCAAAAGA
AACAAAGAGTTGAGCGCATACTTGCAGAAGCGGGTAAAGAATTAGAAGAT
CCCGATCTTTTAACTTCTGGACACTAG