Gchil1212.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1212.t1
Unique NameGchil1212.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length221
Homology
BLAST of Gchil1212.t1 vs. uniprot
Match: A0A6T6CQV1_9RHOD (30S ribosomal protein S17, chloroplastic n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6CQV1_9RHOD)

HSP 1 Score: 129 bits (323), Expect = 1.510e-33
Identity = 75/158 (47.47%), Postives = 99/158 (62.66%), Query Frame = 0
Query:   62 YRTQRKAVYRLPFYGASDAAFDRLSEHQVRTALRAYGGLIRPRDDLQTLFHRLKRLANAA-YRPKQLTIEGVVVSNKMRKSVVIAAKRLCFSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVVVLNFGD-----PTRPGLDQRSI 213
            YRTQR  +YR PF  AS  A   LS+ +V  AL++YGGL+R   +      RL RL  A   R KQL + G+VVSNKM K+VV+  +R  +  KL+  +++ R FMAHDE N CREGDRVVI+ CR +S+ K+ VVV N+G        R G+D RS+
Sbjct:   58 YRTQRPPIYRAPFLNASADAVRSLSDEEVTQALKSYGGLLRGSHE-----ERLVRLLRAVKVRQKQL-VRGIVVSNKMDKTVVVEVRRNAYDHKLKVRFFRRRNFMAHDEENSCREGDRVVIKECRPLSRHKAFVVVENYGHFSTTPQRREGVDPRSL 209          
BLAST of Gchil1212.t1 vs. uniprot
Match: M1VBT5_CYAM1 (30S ribosomal protein S17, chloroplastic n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1VBT5_CYAM1)

HSP 1 Score: 116 bits (290), Expect = 2.920e-28
Identity = 64/133 (48.12%), Postives = 86/133 (64.66%), Query Frame = 0
Query:   69 VYRLPFYGASDAAFDRLSEHQVRTALRAYGGLIRPRDDLQTLFHRLKRLANAAYRPKQLTIEGVVVSNKMRKSVVIAAKRLCFSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVVVLNFG 201
            VY  P++GA       LS  +++ ALRAYGGL+RP D+ + L    KRL +   R +   I GVVVSN  +K+VV+AA+RL +  K++   + TRRFMAHDE + C  GD+V IR CR +S+RK  VVV NFG
Sbjct:   72 VYTAPYFGAPIEQVQSLSLDELKQALRAYGGLVRPTDNQEVL---CKRLLSLTRRRRAQCIHGVVVSNAPQKTVVVAARRLRYEPKIKTYRFVTRRFMAHDEEDRCLLGDKVTIRLCRPLSRRKRFVVVENFG 201          
BLAST of Gchil1212.t1 vs. uniprot
Match: A0A7S0T7F6_9RHOD (30S ribosomal protein S17, chloroplastic (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T7F6_9RHOD)

HSP 1 Score: 100 bits (250), Expect = 1.550e-22
Identity = 64/179 (35.75%), Postives = 92/179 (51.40%), Query Frame = 0
Query:   66 RKAVYRLPFYGASDAAFDRLSEHQVRTALRAYGGLIR---------------PRDDLQTLFHR----------LKRLANAAYRPKQLTIEGVVVSNKMRKSVVIAAKRLCFSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVVVLNFGDPT-RPGLDQRSIQLENI 218
            R  VY +P   A     D      +   L++YGGL +                R+ L+ +  R          +KRL     + K+  + GVVVS+ M++ VVIA +R  + SKL K ++KTRRF AHDE NLCREGD V I+S R +   KSH V+ N+GDP  +   D R+ +L+ +
Sbjct:   16 RPPVYTMPLLEADPEDIDNTDVEYLLKVLKSYGGLCKLTLKGYETGQTNKVLRRNTLRYIHQRHMIPRIMRDRVKRLVTV--KSKEQIVHGVVVSHGMKRGVVIAVRRRFYVSKLNKWFFKTRRFKAHDEFNLCREGDEVAIKSVRRLGPDKSHTVIENYGDPLLKSTKDDRAERLKQL 192          
BLAST of Gchil1212.t1 vs. uniprot
Match: M2VV19_GALSU (30S ribosomal protein S17, chloroplastic n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VV19_GALSU)

HSP 1 Score: 97.1 bits (240), Expect = 1.070e-20
Identity = 57/153 (37.25%), Postives = 89/153 (58.17%), Query Frame = 0
Query:   61 EYRTQR-KAVYRLPFYGASDAAFDRLSEHQVRTALRAYGGLIRPRDDLQTLFHRLKRLANAAYRPKQLTIEGVVVSNKMRKSVVIAAKRLCFSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVVVLNFGD--PTRPGLDQ 210
            EY   R + +Y+ P++ A       LS  ++ +AL+ Y G ++   D + L +RL  +     RP++L I G V S +M K+  + ++R CF  +L+   ++ R+FMAHDE NLC EGD V+IR CR +S RK  VVV N+G   PT   +++
Sbjct:  108 EYEPDRDRLIYQAPYFQAPIELIRSLSTEEIISALKEYAGFLK--GDREILLNRL--IFYTRPRPEEL-IHGKVSSTRMNKTATVVSRRPCFYKRLKVRTFRFRKFMAHDEFNLCDEGDEVLIRHCRPLSDRKRFVVVENYGKRIPTMANMEE 255          
BLAST of Gchil1212.t1 vs. uniprot
Match: A0A2V2RIV4_9BACT (30S ribosomal protein S17 n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V2RIV4_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 5.300e-16
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0
Query:  118 ANAAYRPKQLTIEGVVVSNKMRKSVVIAAKRLCFSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVVVLNFGDP 203
            A AA R  Q T+EG VVSN+M+KSVV+  +R    S  QK+  K+ +FMAHDE N CR GDRVVIR  R +SKRK+  V+     P
Sbjct:   26 AEAAERRLQKTLEGTVVSNRMQKSVVVRVERQVRHSLYQKTIRKSSKFMAHDEENKCRVGDRVVIRETRPISKRKNWRVISIISSP 111          
BLAST of Gchil1212.t1 vs. uniprot
Match: A0A5J4Z5E7_PORPP (30S ribosomal protein S17, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5E7_PORPP)

HSP 1 Score: 83.2 bits (204), Expect = 3.900e-15
Identity = 54/165 (32.73%), Postives = 81/165 (49.09%), Query Frame = 0
Query:   64 TQRKAVYRLPFYGASDAAFDRLSEHQVRTALRAYG--------GLIRPRDDLQTLFHRLKRLANAAYRP-----------------KQLTIEGVVVSNKMRKSVVIAAKRLCFSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRL--MSKRKSHVVVLNFG 201
            T R  VY LP+  A D     + +  +R  L+AYG        G I+P+   Q+   + K+L N                      KQ    G VVSNKM ++V +A + + +  K  K Y+K  +F AHDE NLCREGD V I+  +   +++RK+ V++ N+G
Sbjct:  124 TFRTPVYTLPYLEAPDEEIATMDKDMIRVLLKAYGERVWVPMKGYIKPKGK-QSRIEKNKKLLNEQKEQWPEIWRRRLRISTQITNKQQVKRGTVVSNKMDRTVNVAVRVVKYVPKFNKHYFKHHKFFAHDEYNLCREGDEVAIKQLKTGNLTERKNWVIIENYG 287          
BLAST of Gchil1212.t1 vs. uniprot
Match: UPI001CB9A024 (30S ribosomal protein S17-like n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB9A024)

HSP 1 Score: 71.2 bits (173), Expect = 1.400e-12
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0
Query:  128 TIEGVVVSNKMRKSVVIAAKRLCFSSKLQKSYYK-TRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVV 196
            ++ GVVVSNKM KSVV+A  RL + SKL   Y K T +FMAHDELN C +GDRV +   R +SKRK+ VV
Sbjct:    3 SVTGVVVSNKMTKSVVVAVDRL-YHSKLFNRYVKRTSKFMAHDELNQCNQGDRVRLDPSRPLSKRKNWVV 71          
BLAST of Gchil1212.t1 vs. uniprot
Match: A0A1J4X7I4_9PROT (30S ribosomal protein S17 n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A1J4X7I4_9PROT)

HSP 1 Score: 69.3 bits (168), Expect = 5.010e-12
Identity = 32/72 (44.44%), Postives = 51/72 (70.83%), Query Frame = 0
Query:  121 AYRPKQLTIEGVVVSNKMRKSVVIAAKRLCFSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRK 192
            A R +  T+EGVVVS+KM K++V+  +RL      +K+  +++++ AHDE N CREGDRV++ +CR ++K K
Sbjct:    3 ASRGRARTLEGVVVSDKMEKTIVVKVERLVQHPLYKKTIRRSKKYKAHDETNACREGDRVLLTACRPLAKDK 74          
BLAST of Gchil1212.t1 vs. uniprot
Match: A0A7C3TAU3_9BACT (30S ribosomal protein S17 n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7C3TAU3_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 8.850e-12
Identity = 37/70 (52.86%), Postives = 47/70 (67.14%), Query Frame = 0
Query:  128 TIEGVVVSNKMRKSVVIAAKRLCFSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVVV 197
            T EGVVVSNKM K+VV+A +RL       +   +T +  AHDE N C EGDRVVI++CR +SK KS  V+
Sbjct:    8 TREGVVVSNKMDKTVVVAVERLTRHPLYGRVMRRTTKHKAHDERNECNEGDRVVIQACRPLSKEKSWRVI 77          
BLAST of Gchil1212.t1 vs. uniprot
Match: A0A8F0F7M3_9PHAE (Ribosomal protein S17 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7M3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.240e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0
Query:  131 GVVVSNKMRKSVVIAAKRLCFSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVV 196
            G+V+SNKM+KSVVIA +  C      K   +TRR++AHDE NLC  GD V++   R +SK+K  V+
Sbjct:    8 GIVISNKMQKSVVIAVEHRCKHQFYSKIIVRTRRYLAHDEFNLCNIGDEVLVEESRPLSKKKRWVI 73          
The following BLAST results are available for this feature:
BLAST of Gchil1212.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6T6CQV1_9RHOD1.510e-3347.4730S ribosomal protein S17, chloroplastic n=1 Tax=C... [more]
M1VBT5_CYAM12.920e-2848.1230S ribosomal protein S17, chloroplastic n=1 Tax=C... [more]
A0A7S0T7F6_9RHOD1.550e-2235.7530S ribosomal protein S17, chloroplastic (Fragment... [more]
M2VV19_GALSU1.070e-2037.2530S ribosomal protein S17, chloroplastic n=1 Tax=G... [more]
A0A2V2RIV4_9BACT5.300e-1652.3330S ribosomal protein S17 n=1 Tax=Acidobacteria ba... [more]
A0A5J4Z5E7_PORPP3.900e-1532.7330S ribosomal protein S17, chloroplastic n=1 Tax=P... [more]
UPI001CB9A0241.400e-1258.5730S ribosomal protein S17-like n=1 Tax=Erigeron ca... [more]
A0A1J4X7I4_9PROT5.010e-1244.4430S ribosomal protein S17 n=2 Tax=Proteobacteria T... [more]
A0A7C3TAU3_9BACT8.850e-1252.8630S ribosomal protein S17 n=1 Tax=Armatimonadetes ... [more]
A0A8F0F7M3_9PHAE1.240e-1148.48Ribosomal protein S17 n=1 Tax=Protohalopteris sp. ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 131..197
e-value: 1.5E-21
score: 76.3
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 128..197
NoneNo IPR availableGENE3D2.40.50.140coord: 113..199
e-value: 6.5E-22
score: 79.1
NoneNo IPR availablePANTHERPTHR10744:SF137S RIBOSOMAL PROTEIN S17, MITOCHONDRIALcoord: 128..197
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 128..197

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:170477..171139 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1212.t1Gchil1212.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004437_pilon 170477..171139 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1212.t1 ID=Gchil1212.t1|Name=Gchil1212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=221bp
MLGLRAVSSIFTSNLPRLAPCPVVLRQLTTVPTPPTAQHPTTQSPAPLPV
DAIDTDAAAPEYRTQRKAVYRLPFYGASDAAFDRLSEHQVRTALRAYGGL
IRPRDDLQTLFHRLKRLANAAYRPKQLTIEGVVVSNKMRKSVVIAAKRLC
FSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVVVLNF
GDPTRPGLDQRSIQLENIPA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000266Ribosomal_S17/S11
IPR012340NA-bd_OB-fold