Gchil1212.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1212.t1
Unique NameGchil1212.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length221
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004437_piloncontigtig00004437_pilon:170477..171139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS212CT
PFAMsRibosomal_S17
Max annot lvl2759|Eukaryota
KEGG koko:K02961
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue1.08e-27
EggNOG OGsCOG0186@1|root,KOG1740@2759|Eukaryota
DescriptionrRNA binding
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1212Gchil1212Gracilaria chilensis NLEC103_M9 malegenetig00004437_pilon 170477..171139 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1212.t1.start1Gchil1212.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004437_pilon 170477..170479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1212.t1.CDS1Gchil1212.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004437_pilon 170477..171139 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1212.t1.exon1Gchil1212.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004437_pilon 170477..171139 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1212.t1.stop1Gchil1212.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004437_pilon 171137..171139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1212.t1Gchil1212.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004437_pilon 170477..171139 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1212.t1 ID=Gchil1212.t1|Name=Gchil1212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=221bp
MLGLRAVSSIFTSNLPRLAPCPVVLRQLTTVPTPPTAQHPTTQSPAPLPV
DAIDTDAAAPEYRTQRKAVYRLPFYGASDAAFDRLSEHQVRTALRAYGGL
IRPRDDLQTLFHRLKRLANAAYRPKQLTIEGVVVSNKMRKSVVIAAKRLC
FSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVVVLNF
GDPTRPGLDQRSIQLENIPA*
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spliced messenger RNA

>Gchil1212.t1 ID=Gchil1212.t1|Name=Gchil1212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00004437_pilon:170477..171139+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGGCCTACGAGCCGTGTCCTCCATCTTCACCTCCAATCTGCCACG
ACTAGCACCTTGTCCAGTCGTTCTCCGCCAACTCACAACCGTCCCCACTC
CGCCCACCGCACAACATCCCACCACACAATCCCCCGCTCCGCTTCCAGTC
GACGCAATCGACACCGATGCTGCTGCGCCCGAATACCGCACCCAGCGAAA
AGCCGTCTATCGTCTCCCATTCTATGGCGCGTCCGATGCAGCTTTCGACC
GTCTCTCCGAACACCAAGTTCGAACAGCACTTCGTGCTTACGGCGGTCTT
ATACGACCTCGCGATGACTTGCAAACTCTTTTCCACCGCCTCAAGCGCCT
CGCCAATGCCGCTTATCGACCGAAGCAACTCACTATTGAAGGCGTTGTCG
TTTCAAATAAGATGCGCAAGAGTGTTGTAATTGCTGCGAAACGATTGTGC
TTTTCGTCCAAGTTGCAGAAGAGTTATTATAAAACAAGACGTTTTATGGC
GCACGACGAACTTAACCTTTGTAGAGAGGGTGATCGAGTTGTTATCAGGA
GTTGCAGATTGATGAGCAAGAGAAAGTCTCATGTGGTTGTTCTAAATTTT
GGAGATCCCACACGGCCTGGTTTGGATCAACGCTCCATTCAACTGGAAAA
CATTCCCGCGTGA
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protein sequence of Gchil1212.t1

>Gchil1212.t1 ID=Gchil1212.t1|Name=Gchil1212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=221bp
MLGLRAVSSIFTSNLPRLAPCPVVLRQLTTVPTPPTAQHPTTQSPAPLPV
DAIDTDAAAPEYRTQRKAVYRLPFYGASDAAFDRLSEHQVRTALRAYGGL
IRPRDDLQTLFHRLKRLANAAYRPKQLTIEGVVVSNKMRKSVVIAAKRLC
FSSKLQKSYYKTRRFMAHDELNLCREGDRVVIRSCRLMSKRKSHVVVLNF
GDPTRPGLDQRSIQLENIPA*
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mRNA from alignment at tig00004437_pilon:170477..171139+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1212.t1 ID=Gchil1212.t1|Name=Gchil1212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=663bp|location=Sequence derived from alignment at tig00004437_pilon:170477..171139+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGGCCTACGAGCCGTGTCCTCCATCTTCACCTCCAATCTGCCACG
ACTAGCACCTTGTCCAGTCGTTCTCCGCCAACTCACAACCGTCCCCACTC
CGCCCACCGCACAACATCCCACCACACAATCCCCCGCTCCGCTTCCAGTC
GACGCAATCGACACCGATGCTGCTGCGCCCGAATACCGCACCCAGCGAAA
AGCCGTCTATCGTCTCCCATTCTATGGCGCGTCCGATGCAGCTTTCGACC
GTCTCTCCGAACACCAAGTTCGAACAGCACTTCGTGCTTACGGCGGTCTT
ATACGACCTCGCGATGACTTGCAAACTCTTTTCCACCGCCTCAAGCGCCT
CGCCAATGCCGCTTATCGACCGAAGCAACTCACTATTGAAGGCGTTGTCG
TTTCAAATAAGATGCGCAAGAGTGTTGTAATTGCTGCGAAACGATTGTGC
TTTTCGTCCAAGTTGCAGAAGAGTTATTATAAAACAAGACGTTTTATGGC
GCACGACGAACTTAACCTTTGTAGAGAGGGTGATCGAGTTGTTATCAGGA
GTTGCAGATTGATGAGCAAGAGAAAGTCTCATGTGGTTGTTCTAAATTTT
GGAGATCCCACACGGCCTGGTTTGGATCAACGCTCCATTCAACTGGAAAA
CATTCCCGCGTGA
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Coding sequence (CDS) from alignment at tig00004437_pilon:170477..171139+

>Gchil1212.t1 ID=Gchil1212.t1|Name=Gchil1212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=663bp|location=Sequence derived from alignment at tig00004437_pilon:170477..171139+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGGCCTACGAGCCGTGTCCTCCATCTTCACCTCCAATCTGCCACG
ACTAGCACCTTGTCCAGTCGTTCTCCGCCAACTCACAACCGTCCCCACTC
CGCCCACCGCACAACATCCCACCACACAATCCCCCGCTCCGCTTCCAGTC
GACGCAATCGACACCGATGCTGCTGCGCCCGAATACCGCACCCAGCGAAA
AGCCGTCTATCGTCTCCCATTCTATGGCGCGTCCGATGCAGCTTTCGACC
GTCTCTCCGAACACCAAGTTCGAACAGCACTTCGTGCTTACGGCGGTCTT
ATACGACCTCGCGATGACTTGCAAACTCTTTTCCACCGCCTCAAGCGCCT
CGCCAATGCCGCTTATCGACCGAAGCAACTCACTATTGAAGGCGTTGTCG
TTTCAAATAAGATGCGCAAGAGTGTTGTAATTGCTGCGAAACGATTGTGC
TTTTCGTCCAAGTTGCAGAAGAGTTATTATAAAACAAGACGTTTTATGGC
GCACGACGAACTTAACCTTTGTAGAGAGGGTGATCGAGTTGTTATCAGGA
GTTGCAGATTGATGAGCAAGAGAAAGTCTCATGTGGTTGTTCTAAATTTT
GGAGATCCCACACGGCCTGGTTTGGATCAACGCTCCATTCAACTGGAAAA
CATTCCCGCGTGA
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