Gchil1138.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil1138.t1
Unique Name	Gchil1138.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	132

Homology

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BLAST of Gchil1138.t1 vs. uniprot
Match: RK12_GRATL (50S ribosomal protein L12, chloroplastic n=2 Tax=Agarophyton TaxID=2510776 RepID=RK12_GRATL)

HSP 1 Score: 219 bits (558), Expect = 1.070e-71
Identity = 121/131 (92.37%), Postives = 126/131 (96.18%), Query Frame = 0

Query:    1 MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATTDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKIIKDNTTKENSEEIKKQLEEAGAKVSIK 131
            MNTKITNIIEDLK+LTLLEAAEL+KQIEETFD+DASI SQSQAIVMP   DNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPK+IKDNT KENSEEIK+QLEEAGAKVSIK
Sbjct:    1 MNTKITNIIEDLKSLTLLEAAELIKQIEETFDVDASITSQSQAIVMPTAVDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKMIKDNTNKENSEEIKQQLEEAGAKVSIK 131

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BLAST of Gchil1138.t1 vs. uniprot
Match: A0A2Z2JN52_9FLOR (50S ribosomal protein L12, chloroplastic n=7 Tax=Gracilariaceae TaxID=31469 RepID=A0A2Z2JN52_9FLOR)

HSP 1 Score: 203 bits (516), Expect = 2.690e-65
Identity = 113/131 (86.26%), Postives = 123/131 (93.89%), Query Frame = 0

Query:    1 MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATTDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKIIKDNTTKENSEEIKKQLEEAGAKVSIK 131
            MNTKI NII DL++LTLLEAAELVKQIEETF+IDASI SQ+ AIVMPATTD+SNKNEIEEKTEFD+ILEEVPAAKKIAILKVVRSITGLGLKEAK LVESAPKIIK+N TK+NSEE+K+QL EAGA VSIK
Sbjct:    1 MNTKINNIISDLQSLTLLEAAELVKQIEETFNIDASITSQNAAIVMPATTDHSNKNEIEEKTEFDVILEEVPAAKKIAILKVVRSITGLGLKEAKQLVESAPKIIKENVTKDNSEELKQQLVEAGATVSIK 131

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BLAST of Gchil1138.t1 vs. uniprot
Match: A0A345U982_9FLOR (50S ribosomal protein L12, chloroplastic n=1 Tax=Agarophyton vermiculophyllum TaxID=2608709 RepID=A0A345U982_9FLOR)

HSP 1 Score: 202 bits (515), Expect = 3.820e-65
Identity = 111/131 (84.73%), Postives = 123/131 (93.89%), Query Frame = 0

Query:    1 MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATTDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKIIKDNTTKENSEEIKKQLEEAGAKVSIK 131
            M+TK   II +LK+LTLLEAAELVK+IE+TFDIDAS+ SQ+QAIVMP  TDNSNKNE+EEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAK+LVES PKI+K++TTKENSEEIKKQLEEAGAKVSIK
Sbjct:    1 MSTKTEKIIAELKSLTLLEAAELVKEIEQTFDIDASLTSQTQAIVMPTETDNSNKNEVEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKSLVESTPKIVKESTTKENSEEIKKQLEEAGAKVSIK 131

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BLAST of Gchil1138.t1 vs. uniprot
Match: W8DVY6_9FLOR (50S ribosomal protein L12, chloroplastic n=1 Tax=Gracilaria salicornia TaxID=172968 RepID=W8DVY6_9FLOR)

HSP 1 Score: 200 bits (508), Expect = 4.460e-64
Identity = 111/131 (84.73%), Postives = 122/131 (93.13%), Query Frame = 0

Query:    1 MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATTDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKIIKDNTTKENSEEIKKQLEEAGAKVSIK 131
            MNTKI NII DLK+LTLLEAAEL+KQIE+TF+IDASIASQS AI+MP TTDNS  +E EEKTEF+IILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAP+ IK+N TKENSEE+KKQLEEAGAK+SIK
Sbjct:    1 MNTKIDNIISDLKSLTLLEAAELIKQIEKTFNIDASIASQSPAIMMPTTTDNSTTSETEEKTEFNIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPQTIKENATKENSEELKKQLEEAGAKISIK 131

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BLAST of Gchil1138.t1 vs. uniprot
Match: UPI001D0F63F9 (ribosomal protein L12 n=1 Tax=Gracilaria cliftonii TaxID=206548 RepID=UPI001D0F63F9)

HSP 1 Score: 199 bits (507), Expect = 6.330e-64
Identity = 110/131 (83.97%), Postives = 122/131 (93.13%), Query Frame = 0

Query:    1 MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATTDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKIIKDNTTKENSEEIKKQLEEAGAKVSIK 131
            MNTKI NII DLK LTLLEAAELVKQIEETF+I+ASIASQ+ AI+MPAT D++ KNEIEEKTEF+++LEEVPAAKKIAILKVVRSITGLGLKEAK LVESAPK IK+NTTK+NSEE+KKQLEEAGA VSIK
Sbjct:    1 MNTKINNIISDLKTLTLLEAAELVKQIEETFNINASIASQNAAIIMPATKDDTTKNEIEEKTEFNVVLEEVPAAKKIAILKVVRSITGLGLKEAKQLVESAPKTIKENTTKDNSEELKKQLEEAGATVSIK 131

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BLAST of Gchil1138.t1 vs. uniprot
Match: A0A345U7G9_9FLOR (50S ribosomal protein L12, chloroplastic n=15 Tax=Gracilaria TaxID=2774 RepID=A0A345U7G9_9FLOR)

HSP 1 Score: 197 bits (501), Expect = 5.200e-63
Identity = 111/131 (84.73%), Postives = 119/131 (90.84%), Query Frame = 0

Query:    1 MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATTDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKIIKDNTTKENSEEIKKQLEEAGAKVSIK 131
            MN KI  II DLK+LTLLEAAELVKQIEETF+IDASIASQ+ AI+MP   D+S KNE EEKTEFDIILEEVP+AKKIAILKVVRSITGLGLKEAK LVESAPK IK+NTTKENSEE+KKQLEEAGAKVSIK
Sbjct:    1 MNIKIDTIINDLKSLTLLEAAELVKQIEETFNIDASIASQNPAIIMPTGADSSTKNETEEKTEFDIILEEVPSAKKIAILKVVRSITGLGLKEAKELVESAPKTIKENTTKENSEELKKQLEEAGAKVSIK 131

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BLAST of Gchil1138.t1 vs. uniprot
Match: UPI001D1240EB (ribosomal protein L12 n=1 Tax=Hydropuntia urvillei TaxID=2873519 RepID=UPI001D1240EB)

HSP 1 Score: 186 bits (472), Expect = 1.360e-58
Identity = 103/131 (78.63%), Postives = 115/131 (87.79%), Query Frame = 0

Query:    1 MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATTDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKIIKDNTTKENSEEIKKQLEEAGAKVSIK 131
            MNTKI  II +LK+LTLLEAAELVKQIEETFDIDASI+SQ    ++  TTDNS  ++IEEKTEFDIILE+VP AKKIAILK+VRSITGLGLKEAK LVESAPK IK+NT K N+EE+KKQLEEAGAKVSIK
Sbjct:    1 MNTKIDTIINELKSLTLLEAAELVKQIEETFDIDASISSQGTETIITTTTDNSTPDKIEEKTEFDIILEDVPVAKKIAILKIVRSITGLGLKEAKTLVESAPKTIKENTNKNNAEELKKQLEEAGAKVSIK 131

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BLAST of Gchil1138.t1 vs. uniprot
Match: A0A0C5DCG0_GRALE (50S ribosomal protein L12, chloroplastic n=5 Tax=Gracilariopsis TaxID=2781 RepID=A0A0C5DCG0_GRALE)

HSP 1 Score: 184 bits (466), Expect = 1.120e-57
Identity = 102/131 (77.86%), Postives = 118/131 (90.08%), Query Frame = 0

Query:    1 MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATTDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKIIKDNTTKENSEEIKKQLEEAGAKVSIK 131
            M+TKI +II+DLK+LTLLEAAELVK+IEETFD+DAS+ SQ+Q IVMP   +NS  NE EEKTEFD+ILEEVPAAKKIAILKVVRS+TGLGLKEAK LVESAPK IK+  TKE+SEE+KKQLE+AGAKV+IK
Sbjct:    1 MSTKIDDIIDDLKSLTLLEAAELVKKIEETFDVDASLTSQAQPIVMPLGGENSTTNEAEEKTEFDLILEEVPAAKKIAILKVVRSMTGLGLKEAKDLVESAPKTIKEGITKESSEEMKKQLEDAGAKVTIK 131

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BLAST of Gchil1138.t1 vs. uniprot
Match: A0A345UAD9_9FLOR (50S ribosomal protein L12, chloroplastic n=1 Tax=Gracilariopsis mclachlanii TaxID=486813 RepID=A0A345UAD9_9FLOR)

HSP 1 Score: 183 bits (464), Expect = 2.250e-57
Identity = 102/131 (77.86%), Postives = 117/131 (89.31%), Query Frame = 0

Query:    1 MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATTDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKIIKDNTTKENSEEIKKQLEEAGAKVSIK 131
            M+TKI  II DLK+L+LLEAAELVK+IEETFD+DAS+ASQ+Q I MP  T+ S+ NE EEKTEFD+ILEEVPAAKKIAILKVVRS+TGLGLKEAK LVESAPK IK+  TKENSEE+KK+LEEAGAKV+IK
Sbjct:    1 MSTKIDEIINDLKSLSLLEAAELVKKIEETFDVDASLASQTQPIAMPLGTETSSINETEEKTEFDLILEEVPAAKKIAILKVVRSMTGLGLKEAKDLVESAPKAIKEGITKENSEEMKKELEEAGAKVTIK 131

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BLAST of Gchil1138.t1 vs. uniprot
Match: A0A345U8M8_9FLOR (50S ribosomal protein L12, chloroplastic n=2 Tax=Gracilariaceae TaxID=31469 RepID=A0A345U8M8_9FLOR)

HSP 1 Score: 179 bits (454), Expect = 7.510e-56
Identity = 99/131 (75.57%), Postives = 118/131 (90.08%), Query Frame = 0

Query:    1 MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATTDNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVESAPKIIKDNTTKENSEEIKKQLEEAGAKVSIK 131
            M TKI  II +LK+LTLLEAAELVKQIE+TF+ID SI+SQS A+V+P T++NS+ NEIEEKTEFD+ILEEVPAAKKIAILK+VRSITGLGLKEAK LVESAPK IK++  KE++EE+K+QLE AGAK+SIK
Sbjct:    1 MITKIETIINELKSLTLLEAAELVKQIEKTFNIDTSISSQSTAVVIPNTSENSSHNEIEEKTEFDLILEEVPAAKKIAILKIVRSITGLGLKEAKTLVESAPKAIKESINKEDAEELKQQLEGAGAKISIK 131

The following BLAST results are available for this feature:

BLAST of Gchil1138.t1 vs. uniprot

BLAST of Gchil1138.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
RK12_GRATL	1.070e-71	92.37	50S ribosomal protein L12, chloroplastic n=2 Tax=A...	[more]
A0A2Z2JN52_9FLOR	2.690e-65	86.26	50S ribosomal protein L12, chloroplastic n=7 Tax=G...	[more]
A0A345U982_9FLOR	3.820e-65	84.73	50S ribosomal protein L12, chloroplastic n=1 Tax=A...	[more]
W8DVY6_9FLOR	4.460e-64	84.73	50S ribosomal protein L12, chloroplastic n=1 Tax=G...	[more]
UPI001D0F63F9	6.330e-64	83.97	ribosomal protein L12 n=1 Tax=Gracilaria cliftonii...	[more]
A0A345U7G9_9FLOR	5.200e-63	84.73	50S ribosomal protein L12, chloroplastic n=15 Tax=...	[more]
UPI001D1240EB	1.360e-58	78.63	ribosomal protein L12 n=1 Tax=Hydropuntia urvillei...	[more]
A0A0C5DCG0_GRALE	1.120e-57	77.86	50S ribosomal protein L12, chloroplastic n=5 Tax=G...	[more]
A0A345UAD9_9FLOR	2.250e-57	77.86	50S ribosomal protein L12, chloroplastic n=1 Tax=G...	[more]
A0A345U8M8_9FLOR	7.510e-56	75.57	50S ribosomal protein L12, chloroplastic n=2 Tax=G...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 4..38 e-value: 7.6E-12 score: 44.7
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 64..131 e-value: 5.3E-27 score: 94.0
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 4..131 e-value: 3.5E-39 score: 132.0
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 3..131
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 2..131 score: 24.056389
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 3..130 e-value: 4.90291E-44 score: 138.442
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 61..131 e-value: 4.1E-27 score: 96.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 59..131
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 4..60 e-value: 8.0E-13 score: 50.2
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 4..66
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 3..131

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:163580..163975 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1138.t1	Gchil1138.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000237_pilon 163580..163975 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil1138.t1 ID=Gchil1138.t1|Name=Gchil1138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=132bp
MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATT
DNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVES
APKIIKDNTTKENSEEIKKQLEEAGAKVSIK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008932	Ribosomal_L7/L12_oligo
IPR013823	Ribosomal_L7/L12_C
IPR000206	Ribosomal_L7/12
IPR014719	Ribosomal_L7/12_C/ClpS-like
IPR036235	Ribosomal_L7/L12_oligo_N_sf