Gchil1138.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1138.t1
Unique NameGchil1138.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length132
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:163580..163975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog582515.KR51_00035350
Preferred namerplL
PFAMsRibosomal_L12,Ribosomal_L12_N
Max annot lvl1117|Cyanobacteria
KEGG koko:K02935
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Evalue3.07e-42
EggNOG OGsCOG0222@1|root,COG0222@2|Bacteria,1G6XE@1117|Cyanobacteria
DescriptionForms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1138Gchil1138Gracilaria chilensis NLEC103_M9 malegenetig00000237_pilon 163580..163975 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1138.t1.start1Gchil1138.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000237_pilon 163580..163582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1138.t1.CDS1Gchil1138.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000237_pilon 163580..163975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1138.t1.exon1Gchil1138.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000237_pilon 163580..163975 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1138.t1.stop1Gchil1138.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000237_pilon 163973..163975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1138.t1Gchil1138.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000237_pilon 163580..163975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1138.t1 ID=Gchil1138.t1|Name=Gchil1138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=132bp
MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATT
DNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVES
APKIIKDNTTKENSEEIKKQLEEAGAKVSIK*
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spliced messenger RNA

>Gchil1138.t1 ID=Gchil1138.t1|Name=Gchil1138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00000237_pilon:163580..163975+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATACAAAAATCACTAATATTATAGAAGATCTAAAAGCACTAACACT
TCTAGAAGCAGCTGAATTAGTCAAACAAATCGAAGAAACATTTGATATTG
ATGCATCTATTGCGTCTCAAAGCCAAGCGATTGTTATGCCTGCAACTACA
GATAATTCTAATAAAAACGAAATAGAAGAAAAAACAGAGTTTGATATTAT
TCTGGAAGAAGTACCAGCAGCTAAAAAAATTGCTATATTAAAAGTCGTTC
GATCTATAACAGGATTAGGATTGAAAGAAGCAAAGGCGCTAGTAGAGTCA
GCACCTAAAATAATAAAAGATAATACAACTAAAGAAAACTCAGAAGAAAT
CAAAAAACAATTAGAAGAAGCTGGAGCTAAAGTATCAATCAAATAA
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protein sequence of Gchil1138.t1

>Gchil1138.t1 ID=Gchil1138.t1|Name=Gchil1138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=132bp
MNTKITNIIEDLKALTLLEAAELVKQIEETFDIDASIASQSQAIVMPATT
DNSNKNEIEEKTEFDIILEEVPAAKKIAILKVVRSITGLGLKEAKALVES
APKIIKDNTTKENSEEIKKQLEEAGAKVSIK*
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mRNA from alignment at tig00000237_pilon:163580..163975+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1138.t1 ID=Gchil1138.t1|Name=Gchil1138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=396bp|location=Sequence derived from alignment at tig00000237_pilon:163580..163975+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATACAAAAATCACTAATATTATAGAAGATCTAAAAGCACTAACACT
TCTAGAAGCAGCTGAATTAGTCAAACAAATCGAAGAAACATTTGATATTG
ATGCATCTATTGCGTCTCAAAGCCAAGCGATTGTTATGCCTGCAACTACA
GATAATTCTAATAAAAACGAAATAGAAGAAAAAACAGAGTTTGATATTAT
TCTGGAAGAAGTACCAGCAGCTAAAAAAATTGCTATATTAAAAGTCGTTC
GATCTATAACAGGATTAGGATTGAAAGAAGCAAAGGCGCTAGTAGAGTCA
GCACCTAAAATAATAAAAGATAATACAACTAAAGAAAACTCAGAAGAAAT
CAAAAAACAATTAGAAGAAGCTGGAGCTAAAGTATCAATCAAATAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:163580..163975+

>Gchil1138.t1 ID=Gchil1138.t1|Name=Gchil1138.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=396bp|location=Sequence derived from alignment at tig00000237_pilon:163580..163975+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATACAAAAATCACTAATATTATAGAAGATCTAAAAGCACTAACACT
TCTAGAAGCAGCTGAATTAGTCAAACAAATCGAAGAAACATTTGATATTG
ATGCATCTATTGCGTCTCAAAGCCAAGCGATTGTTATGCCTGCAACTACA
GATAATTCTAATAAAAACGAAATAGAAGAAAAAACAGAGTTTGATATTAT
TCTGGAAGAAGTACCAGCAGCTAAAAAAATTGCTATATTAAAAGTCGTTC
GATCTATAACAGGATTAGGATTGAAAGAAGCAAAGGCGCTAGTAGAGTCA
GCACCTAAAATAATAAAAGATAATACAACTAAAGAAAACTCAGAAGAAAT
CAAAAAACAATTAGAAGAAGCTGGAGCTAAAGTATCAATCAAATAA
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