Gchil9993.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9993.t1
Unique NameGchil9993.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length120
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:173797..174156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog556261.HMPREF0240_04487
PFAMsrhaM
Max annot lvl186801|Clostridia
Evalue2.62e-14
EggNOG OGsCOG3254@1|root,COG3254@2|Bacteria,1V1XT@1239|Firmicutes,24NE4@186801|Clostridia
DescriptionL-rhamnose mutarotase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9993Gchil9993Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 173797..174156 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9993.t1.stop1Gchil9993.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 173797..173799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9993.t1.CDS1Gchil9993.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 173797..174156 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9993.t1.exon1Gchil9993.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 173797..174156 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9993.t1.start1Gchil9993.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 174154..174156 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9993.t1Gchil9993.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 173797..174156 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9993.t1 ID=Gchil9993.t1|Name=Gchil9993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=120bp
MSAAESGAQQEPMRIAMTLNIKAGALQEYIDHHAHSRPEVREALRSVGIR
NLSLWNWGERLFYYAEYVGSEPFDQAMERYSKMDGVQGWEDLMHKYQEKI
AGSEGDVWWQQCQLVYYQA*
back to top

spliced messenger RNA

>Gchil9993.t1 ID=Gchil9993.t1|Name=Gchil9993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp|location=Sequence derived from alignment at tig00004442_pilon:173797..174156- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCGGCAGAAAGCGGGGCGCAGCAGGAGCCGATGCGCATTGCCAT
GACGCTCAACATCAAGGCTGGTGCGTTGCAGGAGTACATTGATCACCACG
CGCACAGCCGGCCCGAGGTGCGCGAAGCGCTGCGCAGCGTGGGAATCCGA
AACCTGAGTTTGTGGAATTGGGGTGAGCGTTTGTTCTACTACGCAGAGTA
CGTCGGCAGTGAACCGTTCGACCAGGCGATGGAGAGGTACTCCAAGATGG
ACGGGGTGCAGGGCTGGGAGGATCTGATGCACAAATACCAGGAGAAGATC
GCGGGAAGCGAGGGGGACGTGTGGTGGCAACAATGTCAACTGGTTTACTA
CCAAGCATAG
back to top

protein sequence of Gchil9993.t1

>Gchil9993.t1 ID=Gchil9993.t1|Name=Gchil9993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=120bp
MSAAESGAQQEPMRIAMTLNIKAGALQEYIDHHAHSRPEVREALRSVGIR
NLSLWNWGERLFYYAEYVGSEPFDQAMERYSKMDGVQGWEDLMHKYQEKI
AGSEGDVWWQQCQLVYYQA*
back to top

mRNA from alignment at tig00004442_pilon:173797..174156-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9993.t1 ID=Gchil9993.t1|Name=Gchil9993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp|location=Sequence derived from alignment at tig00004442_pilon:173797..174156- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCGGCAGAAAGCGGGGCGCAGCAGGAGCCGATGCGCATTGCCAT
GACGCTCAACATCAAGGCTGGTGCGTTGCAGGAGTACATTGATCACCACG
CGCACAGCCGGCCCGAGGTGCGCGAAGCGCTGCGCAGCGTGGGAATCCGA
AACCTGAGTTTGTGGAATTGGGGTGAGCGTTTGTTCTACTACGCAGAGTA
CGTCGGCAGTGAACCGTTCGACCAGGCGATGGAGAGGTACTCCAAGATGG
ACGGGGTGCAGGGCTGGGAGGATCTGATGCACAAATACCAGGAGAAGATC
GCGGGAAGCGAGGGGGACGTGTGGTGGCAACAATGTCAACTGGTTTACTA
CCAAGCATAG
back to top

Coding sequence (CDS) from alignment at tig00004442_pilon:173797..174156-

>Gchil9993.t1 ID=Gchil9993.t1|Name=Gchil9993.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=360bp|location=Sequence derived from alignment at tig00004442_pilon:173797..174156- (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGCGGCAGAAAGCGGGGCGCAGCAGGAGCCGATGCGCATTGCCAT
GACGCTCAACATCAAGGCTGGTGCGTTGCAGGAGTACATTGATCACCACG
CGCACAGCCGGCCCGAGGTGCGCGAAGCGCTGCGCAGCGTGGGAATCCGA
AACCTGAGTTTGTGGAATTGGGGTGAGCGTTTGTTCTACTACGCAGAGTA
CGTCGGCAGTGAACCGTTCGACCAGGCGATGGAGAGGTACTCCAAGATGG
ACGGGGTGCAGGGCTGGGAGGATCTGATGCACAAATACCAGGAGAAGATC
GCGGGAAGCGAGGGGGACGTGTGGTGGCAACAATGTCAACTGGTTTACTA
CCAAGCATAG
back to top