Gchil9552.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9552.t1
Unique NameGchil9552.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length580
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:4861825..4863564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr49215
PFAMsVWA_2
Max annot lvl2836|Bacillariophyta
Evalue1.83e-06
EggNOG OGsKOG2353@1|root,KOG2353@2759|Eukaryota,2XEN6@2836|Bacillariophyta
Descriptionvon Willebrand factor type A domain
COG categoryPT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9552Gchil9552Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 4861825..4863564 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9552.t1.stop1Gchil9552.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 4861825..4861827 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9552.t1.CDS1Gchil9552.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 4861825..4863564 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9552.t1.exon1Gchil9552.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 4861825..4863564 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9552.t1.start1Gchil9552.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 4863562..4863564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9552.t1Gchil9552.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 4861825..4863564 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=580bp
MSLISAIAALGRNDYVSVISMGKTVEVLGNSDKLERATSEVKEQLKQDVK
RLKPSSGRPDTSALEEAFSILRRSKEQGSSSGCSKIIVLLIGNEPVCFEQ
CRLPPMTCTCTSDLVDSIIREQESLGENVSIVTFTEGNNNNAERVARSFV
CESSAPGAWRRVSSSESPESSLSAYTDIASLTQKSKEYTSEITKDFSGLG
DVFTIAQPVYEAESVRLVGVVGVDITIAQVSKAVGGREIAESAINTQIGT
ENRNCEARNPDSCEMQTLRAQYGGVCADILVRSDQTWKCFRAGESLYMRL
ETALTWSEARLQCRSFGSGSDLAIVDSRGKNEIVAGISSLDGSWIGLRAT
QGENVQWVNGSEFVARSLGFSITNGDIQAEIDELHQQELVDACVSVDRRG
ISENWNIVPCDAKRLATCEVKENSENASVLCPTGSIFDRRRTEYEPINNL
GCDTSGFPSCPAEEDEALKTANPFCEEKSETPRSEFDRICCGGRSDSGPR
EECKDDGAPVAAIAGGVIGGLLAVAAVVLVVFLLFPRMKRCRASDSKASS
ASTPSARLNEITGTKIDIRPEDLHRLDMM*
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spliced messenger RNA

>Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00004370_pilon:4861825..4863564- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATTAATTTCAGCAATTGCAGCTCTAGGTCGAAATGATTACGTATC
TGTGATTTCGATGGGGAAAACCGTCGAAGTACTTGGAAACTCGGACAAAC
TCGAACGTGCTACAAGTGAAGTCAAGGAACAGCTGAAGCAGGATGTTAAA
AGATTAAAACCATCCAGCGGTCGACCAGACACATCTGCACTAGAAGAAGC
CTTCAGTATTTTACGAAGATCTAAAGAACAAGGGAGCTCGAGTGGTTGCT
CAAAGATTATAGTGTTGCTCATAGGAAATGAACCAGTTTGCTTTGAACAG
TGCCGGTTACCGCCTATGACTTGCACATGTACATCTGACCTAGTTGATTC
CATAATACGGGAGCAGGAAAGCTTAGGAGAAAATGTTTCTATCGTCACTT
TCACGGAAGGGAACAACAATAATGCTGAACGTGTTGCACGTTCTTTCGTT
TGCGAATCCTCTGCCCCCGGCGCATGGAGACGAGTGTCTTCCTCGGAGAG
TCCGGAGTCTTCCTTGTCTGCGTATACTGACATTGCTTCGCTGACACAGA
AAAGCAAGGAGTACACCTCTGAGATAACGAAGGACTTCTCAGGGTTGGGA
GATGTATTCACAATCGCTCAGCCAGTTTATGAAGCGGAATCAGTTCGTCT
TGTTGGAGTCGTTGGTGTCGATATTACCATCGCACAAGTTAGCAAAGCTG
TTGGTGGTCGGGAAATAGCTGAGTCAGCCATAAACACTCAGATCGGAACC
GAGAACAGAAATTGTGAGGCAAGGAATCCAGATTCGTGCGAAATGCAGAC
ATTAAGAGCACAATACGGTGGTGTTTGCGCTGATATTCTTGTAAGAAGTG
ATCAAACCTGGAAGTGCTTTCGAGCTGGGGAATCACTTTACATGAGACTA
GAAACTGCTTTGACATGGTCTGAGGCCCGATTGCAGTGTAGAAGTTTCGG
AAGTGGAAGCGACTTGGCGATTGTGGACAGTCGTGGAAAGAATGAAATTG
TGGCCGGTATTAGTTCGCTTGACGGAAGTTGGATTGGATTAAGAGCCACG
CAAGGTGAAAATGTTCAGTGGGTGAACGGATCTGAATTTGTGGCTCGAAG
CCTGGGTTTTAGTATCACAAATGGCGACATTCAGGCGGAAATTGACGAGC
TCCATCAACAGGAACTTGTCGACGCTTGTGTTTCTGTTGATCGTCGGGGT
ATCAGTGAGAACTGGAACATCGTTCCGTGCGACGCGAAACGCTTGGCGAC
ATGTGAGGTGAAGGAGAATTCAGAAAATGCGAGCGTGCTTTGTCCGACTG
GCAGCATTTTTGACCGCAGAAGGACTGAATATGAACCTATCAATAATCTT
GGTTGTGACACCTCTGGTTTTCCGTCATGCCCAGCAGAAGAAGATGAAGC
CTTGAAGACGGCGAACCCGTTTTGTGAAGAAAAGTCAGAGACGCCAAGGA
GTGAATTTGACCGAATCTGTTGCGGTGGAAGATCAGACAGTGGTCCTAGA
GAGGAATGCAAGGATGATGGTGCCCCTGTCGCCGCGATTGCTGGAGGAGT
CATTGGAGGTTTACTCGCCGTGGCTGCGGTTGTGCTCGTGGTCTTCTTGT
TGTTTCCGAGGATGAAAAGATGTCGAGCTTCAGACTCTAAAGCTTCCTCT
GCATCGACACCATCTGCAAGACTTAATGAAATCACTGGAACCAAAATTGA
TATTCGGCCAGAAGACCTCCATAGACTGGACATGATGTGA
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protein sequence of Gchil9552.t1

>Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=580bp
MSLISAIAALGRNDYVSVISMGKTVEVLGNSDKLERATSEVKEQLKQDVK
RLKPSSGRPDTSALEEAFSILRRSKEQGSSSGCSKIIVLLIGNEPVCFEQ
CRLPPMTCTCTSDLVDSIIREQESLGENVSIVTFTEGNNNNAERVARSFV
CESSAPGAWRRVSSSESPESSLSAYTDIASLTQKSKEYTSEITKDFSGLG
DVFTIAQPVYEAESVRLVGVVGVDITIAQVSKAVGGREIAESAINTQIGT
ENRNCEARNPDSCEMQTLRAQYGGVCADILVRSDQTWKCFRAGESLYMRL
ETALTWSEARLQCRSFGSGSDLAIVDSRGKNEIVAGISSLDGSWIGLRAT
QGENVQWVNGSEFVARSLGFSITNGDIQAEIDELHQQELVDACVSVDRRG
ISENWNIVPCDAKRLATCEVKENSENASVLCPTGSIFDRRRTEYEPINNL
GCDTSGFPSCPAEEDEALKTANPFCEEKSETPRSEFDRICCGGRSDSGPR
EECKDDGAPVAAIAGGVIGGLLAVAAVVLVVFLLFPRMKRCRASDSKASS
ASTPSARLNEITGTKIDIRPEDLHRLDMM*
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mRNA from alignment at tig00004370_pilon:4861825..4863564-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00004370_pilon:4861825..4863564- (Gracilaria chilensis NLEC103_M9 male)
ATGTCATTAATTTCAGCAATTGCAGCTCTAGGTCGAAATGATTACGTATC
TGTGATTTCGATGGGGAAAACCGTCGAAGTACTTGGAAACTCGGACAAAC
TCGAACGTGCTACAAGTGAAGTCAAGGAACAGCTGAAGCAGGATGTTAAA
AGATTAAAACCATCCAGCGGTCGACCAGACACATCTGCACTAGAAGAAGC
CTTCAGTATTTTACGAAGATCTAAAGAACAAGGGAGCTCGAGTGGTTGCT
CAAAGATTATAGTGTTGCTCATAGGAAATGAACCAGTTTGCTTTGAACAG
TGCCGGTTACCGCCTATGACTTGCACATGTACATCTGACCTAGTTGATTC
CATAATACGGGAGCAGGAAAGCTTAGGAGAAAATGTTTCTATCGTCACTT
TCACGGAAGGGAACAACAATAATGCTGAACGTGTTGCACGTTCTTTCGTT
TGCGAATCCTCTGCCCCCGGCGCATGGAGACGAGTGTCTTCCTCGGAGAG
TCCGGAGTCTTCCTTGTCTGCGTATACTGACATTGCTTCGCTGACACAGA
AAAGCAAGGAGTACACCTCTGAGATAACGAAGGACTTCTCAGGGTTGGGA
GATGTATTCACAATCGCTCAGCCAGTTTATGAAGCGGAATCAGTTCGTCT
TGTTGGAGTCGTTGGTGTCGATATTACCATCGCACAAGTTAGCAAAGCTG
TTGGTGGTCGGGAAATAGCTGAGTCAGCCATAAACACTCAGATCGGAACC
GAGAACAGAAATTGTGAGGCAAGGAATCCAGATTCGTGCGAAATGCAGAC
ATTAAGAGCACAATACGGTGGTGTTTGCGCTGATATTCTTGTAAGAAGTG
ATCAAACCTGGAAGTGCTTTCGAGCTGGGGAATCACTTTACATGAGACTA
GAAACTGCTTTGACATGGTCTGAGGCCCGATTGCAGTGTAGAAGTTTCGG
AAGTGGAAGCGACTTGGCGATTGTGGACAGTCGTGGAAAGAATGAAATTG
TGGCCGGTATTAGTTCGCTTGACGGAAGTTGGATTGGATTAAGAGCCACG
CAAGGTGAAAATGTTCAGTGGGTGAACGGATCTGAATTTGTGGCTCGAAG
CCTGGGTTTTAGTATCACAAATGGCGACATTCAGGCGGAAATTGACGAGC
TCCATCAACAGGAACTTGTCGACGCTTGTGTTTCTGTTGATCGTCGGGGT
ATCAGTGAGAACTGGAACATCGTTCCGTGCGACGCGAAACGCTTGGCGAC
ATGTGAGGTGAAGGAGAATTCAGAAAATGCGAGCGTGCTTTGTCCGACTG
GCAGCATTTTTGACCGCAGAAGGACTGAATATGAACCTATCAATAATCTT
GGTTGTGACACCTCTGGTTTTCCGTCATGCCCAGCAGAAGAAGATGAAGC
CTTGAAGACGGCGAACCCGTTTTGTGAAGAAAAGTCAGAGACGCCAAGGA
GTGAATTTGACCGAATCTGTTGCGGTGGAAGATCAGACAGTGGTCCTAGA
GAGGAATGCAAGGATGATGGTGCCCCTGTCGCCGCGATTGCTGGAGGAGT
CATTGGAGGTTTACTCGCCGTGGCTGCGGTTGTGCTCGTGGTCTTCTTGT
TGTTTCCGAGGATGAAAAGATGTCGAGCTTCAGACTCTAAAGCTTCCTCT
GCATCGACACCATCTGCAAGACTTAATGAAATCACTGGAACCAAAATTGA
TATTCGGCCAGAAGACCTCCATAGACTGGACATGATGTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:4861825..4863564-

>Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1740bp|location=Sequence derived from alignment at tig00004370_pilon:4861825..4863564- (Gracilaria chilensis NLEC103_M9 male)
ATGTCATTAATTTCAGCAATTGCAGCTCTAGGTCGAAATGATTACGTATC
TGTGATTTCGATGGGGAAAACCGTCGAAGTACTTGGAAACTCGGACAAAC
TCGAACGTGCTACAAGTGAAGTCAAGGAACAGCTGAAGCAGGATGTTAAA
AGATTAAAACCATCCAGCGGTCGACCAGACACATCTGCACTAGAAGAAGC
CTTCAGTATTTTACGAAGATCTAAAGAACAAGGGAGCTCGAGTGGTTGCT
CAAAGATTATAGTGTTGCTCATAGGAAATGAACCAGTTTGCTTTGAACAG
TGCCGGTTACCGCCTATGACTTGCACATGTACATCTGACCTAGTTGATTC
CATAATACGGGAGCAGGAAAGCTTAGGAGAAAATGTTTCTATCGTCACTT
TCACGGAAGGGAACAACAATAATGCTGAACGTGTTGCACGTTCTTTCGTT
TGCGAATCCTCTGCCCCCGGCGCATGGAGACGAGTGTCTTCCTCGGAGAG
TCCGGAGTCTTCCTTGTCTGCGTATACTGACATTGCTTCGCTGACACAGA
AAAGCAAGGAGTACACCTCTGAGATAACGAAGGACTTCTCAGGGTTGGGA
GATGTATTCACAATCGCTCAGCCAGTTTATGAAGCGGAATCAGTTCGTCT
TGTTGGAGTCGTTGGTGTCGATATTACCATCGCACAAGTTAGCAAAGCTG
TTGGTGGTCGGGAAATAGCTGAGTCAGCCATAAACACTCAGATCGGAACC
GAGAACAGAAATTGTGAGGCAAGGAATCCAGATTCGTGCGAAATGCAGAC
ATTAAGAGCACAATACGGTGGTGTTTGCGCTGATATTCTTGTAAGAAGTG
ATCAAACCTGGAAGTGCTTTCGAGCTGGGGAATCACTTTACATGAGACTA
GAAACTGCTTTGACATGGTCTGAGGCCCGATTGCAGTGTAGAAGTTTCGG
AAGTGGAAGCGACTTGGCGATTGTGGACAGTCGTGGAAAGAATGAAATTG
TGGCCGGTATTAGTTCGCTTGACGGAAGTTGGATTGGATTAAGAGCCACG
CAAGGTGAAAATGTTCAGTGGGTGAACGGATCTGAATTTGTGGCTCGAAG
CCTGGGTTTTAGTATCACAAATGGCGACATTCAGGCGGAAATTGACGAGC
TCCATCAACAGGAACTTGTCGACGCTTGTGTTTCTGTTGATCGTCGGGGT
ATCAGTGAGAACTGGAACATCGTTCCGTGCGACGCGAAACGCTTGGCGAC
ATGTGAGGTGAAGGAGAATTCAGAAAATGCGAGCGTGCTTTGTCCGACTG
GCAGCATTTTTGACCGCAGAAGGACTGAATATGAACCTATCAATAATCTT
GGTTGTGACACCTCTGGTTTTCCGTCATGCCCAGCAGAAGAAGATGAAGC
CTTGAAGACGGCGAACCCGTTTTGTGAAGAAAAGTCAGAGACGCCAAGGA
GTGAATTTGACCGAATCTGTTGCGGTGGAAGATCAGACAGTGGTCCTAGA
GAGGAATGCAAGGATGATGGTGCCCCTGTCGCCGCGATTGCTGGAGGAGT
CATTGGAGGTTTACTCGCCGTGGCTGCGGTTGTGCTCGTGGTCTTCTTGT
TGTTTCCGAGGATGAAAAGATGTCGAGCTTCAGACTCTAAAGCTTCCTCT
GCATCGACACCATCTGCAAGACTTAATGAAATCACTGGAACCAAAATTGA
TATTCGGCCAGAAGACCTCCATAGACTGGACATGATGTGA
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