Gchil9413.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9413.t1
Unique NameGchil9413.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length533
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:3948080..3950580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI56494
Max annot lvl4776|Peronosporales
Evalue1.65e-09
EggNOG OGs2CTDP@1|root,2RFZI@2759|Eukaryota,3QHHE@4776|Peronosporales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9413Gchil9413Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 3948080..3950580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9413.t1Gchil9413.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 3948080..3950580 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9413.t1.stop1Gchil9413.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 3948080..3948082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9413.t1.CDS1Gchil9413.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 3948080..3948834 -
Gchil9413.t1.CDS2Gchil9413.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 3949579..3949896 -
Gchil9413.t1.CDS3Gchil9413.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 3950055..3950580 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9413.t1.exon1Gchil9413.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 3948080..3948834 -
Gchil9413.t1.exon2Gchil9413.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 3949579..3949896 -
Gchil9413.t1.exon3Gchil9413.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 3950055..3950580 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9413.t1.intron1Gchil9413.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 3948835..3949578 -
Gchil9413.t1.intron2Gchil9413.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 3949897..3950054 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9413.t1.start1Gchil9413.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 3950578..3950580 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9413.t1 ID=Gchil9413.t1|Name=Gchil9413.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=533bp
MEITGTRYSKIWSALSSTVGRRQRVEDFVEGWFNFPQRANAMITELEDEL
ASVNRTFLYVPGITIFSFEDDHQRLRSKAVAQFPAMCHINNPQKALGPLN
NAICSALNPVFLASHYSRPGEKLIHVCERLVRLIQGVTTSGPVRPMVDSI
FASDRGYNVRAKIDDINDRLDATGLVYRESFSGRIAAIYHNNDRLFSATK
FTLIPRAGHQKQSSSKQRELFHLVFEGSVTTNVKNDGYENDIAVSLPRMK
VSPVISRVDEIKLLQSQDPGWFLSRAFQFTSHNYDELVACEVEIKTMTAL
NTIEAARQRRHSLAPITYINDIGQNEESLKQFQALVPSTEYRIQCVHHAL
SFNLNYVMFVLTKGSNCGVGQVIYIAILEFHKSLKAMYSYILGSIHVGAF
EWVGKGASAITNEYDDLLQTSHASDLHSYASYYSLSQAYKTLARNCGTLP
PARMIRPTAFVYCNYLKGGVNEFSRAMTSLCYKNSGENPIVSIIGRFLCA
QVNNAAVVHCLSVARRKGRLPDQFEEMQRKGV*
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spliced messenger RNA

>Gchil9413.t1 ID=Gchil9413.t1|Name=Gchil9413.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at tig00004370_pilon:3948080..3950580- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATTACAGGTACACGCTACTCTAAGATCTGGTCGGCTCTGTCTTC
CACAGTCGGCCGAAGGCAGAGAGTGGAGGACTTTGTTGAAGGATGGTTCA
ATTTCCCACAAAGAGCGAACGCAATGATTACTGAACTCGAAGACGAGTTG
GCGTCAGTGAATCGCACTTTTCTGTATGTGCCTGGAATCACTATTTTCAG
TTTTGAAGACGACCATCAACGGCTGCGATCCAAAGCTGTTGCTCAGTTCC
CAGCCATGTGTCATATAAACAATCCTCAAAAGGCTCTAGGTCCACTTAAT
AACGCAATTTGTTCAGCTCTGAACCCTGTGTTTCTGGCCAGTCACTACTC
TAGACCGGGTGAGAAATTAATCCATGTCTGTGAACGGCTTGTGCGACTTA
TTCAAGGAGTCACAACTTCTGGTCCTGTGAGACCTATGGTGGACTCCATA
TTTGCATCGGATAGAGGCTACAACGTCAGAGCGAAAATCGACGACATCAA
CGATAGGCTAGATGCGACAGGACTTGTGTATCGTGAGAGCTTCAGTGGCC
GCATTGCAGCGATATACCATAACAACGACCGTTTGTTTTCTGCCACAAAG
TTTACTCTCATCCCAAGAGCTGGCCATCAGAAGCAATCCAGTTCAAAGCA
AAGAGAACTTTTTCACCTTGTCTTTGAAGGTTCCGTCACAACAAATGTTA
AAAACGACGGTTATGAAAACGATATTGCCGTTTCTCTACCGAGAATGAAA
GTTAGTCCGGTAATATCTCGTGTGGATGAAATAAAACTATTACAGTCGCA
GGACCCAGGGTGGTTTCTAAGCAGGGCATTTCAGTTTACTTCACACAATT
ACGATGAACTTGTTGCATGCGAAGTGGAAATCAAGACAATGACAGCGTTA
AATACAATTGAAGCCGCACGACAGAGGAGACACAGCCTTGCCCCAATTAC
GTATATCAACGACATCGGACAGAATGAGGAATCCTTGAAACAGTTTCAAG
CTCTTGTTCCGTCCACCGAGTATCGCATTCAGTGTGTGCATCACGCTTTA
TCCTTCAATCTGAATTACGTCATGTTTGTTCTGACCAAGGGTAGTAATTG
TGGGGTTGGTCAAGTGATATACATTGCAATCTTGGAGTTTCATAAGAGTT
TGAAGGCAATGTATAGCTATATACTGGGATCAATTCATGTCGGAGCATTT
GAATGGGTTGGAAAAGGAGCTTCTGCCATAACGAATGAGTACGATGACCT
TTTACAGACATCTCATGCTTCTGACTTACATTCATATGCATCGTATTATA
GTTTAAGTCAAGCTTACAAGACTCTTGCTCGCAATTGTGGTACTTTGCCT
CCGGCAAGGATGATTCGTCCAACTGCGTTCGTTTACTGTAATTACCTGAA
AGGAGGTGTCAATGAGTTTAGCAGGGCAATGACTAGCCTCTGTTATAAAA
ACAGTGGTGAAAATCCCATCGTCAGCATCATTGGGCGCTTTCTATGCGCC
CAAGTCAACAACGCTGCTGTTGTTCATTGTTTGTCAGTAGCAAGGCGTAA
AGGACGACTACCGGATCAGTTCGAGGAGATGCAGAGGAAAGGGGTATAG
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protein sequence of Gchil9413.t1

>Gchil9413.t1 ID=Gchil9413.t1|Name=Gchil9413.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=533bp
MEITGTRYSKIWSALSSTVGRRQRVEDFVEGWFNFPQRANAMITELEDEL
ASVNRTFLYVPGITIFSFEDDHQRLRSKAVAQFPAMCHINNPQKALGPLN
NAICSALNPVFLASHYSRPGEKLIHVCERLVRLIQGVTTSGPVRPMVDSI
FASDRGYNVRAKIDDINDRLDATGLVYRESFSGRIAAIYHNNDRLFSATK
FTLIPRAGHQKQSSSKQRELFHLVFEGSVTTNVKNDGYENDIAVSLPRMK
VSPVISRVDEIKLLQSQDPGWFLSRAFQFTSHNYDELVACEVEIKTMTAL
NTIEAARQRRHSLAPITYINDIGQNEESLKQFQALVPSTEYRIQCVHHAL
SFNLNYVMFVLTKGSNCGVGQVIYIAILEFHKSLKAMYSYILGSIHVGAF
EWVGKGASAITNEYDDLLQTSHASDLHSYASYYSLSQAYKTLARNCGTLP
PARMIRPTAFVYCNYLKGGVNEFSRAMTSLCYKNSGENPIVSIIGRFLCA
QVNNAAVVHCLSVARRKGRLPDQFEEMQRKGV*
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mRNA from alignment at tig00004370_pilon:3948080..3950580-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9413.t1 ID=Gchil9413.t1|Name=Gchil9413.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2501bp|location=Sequence derived from alignment at tig00004370_pilon:3948080..3950580- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATTACAGGTACACGCTACTCTAAGATCTGGTCGGCTCTGTCTTC
CACAGTCGGCCGAAGGCAGAGAGTGGAGGACTTTGTTGAAGGATGGTTCA
ATTTCCCACAAAGAGCGAACGCAATGATTACTGAACTCGAAGACGAGTTG
GCGTCAGTGAATCGCACTTTTCTGTATGTGCCTGGAATCACTATTTTCAG
TTTTGAAGACGACCATCAACGGCTGCGATCCAAAGCTGTTGCTCAGTTCC
CAGCCATGTGTCATATAAACAATCCTCAAAAGGCTCTAGGTCCACTTAAT
AACGCAATTTGTTCAGCTCTGAACCCTGTGTTTCTGGCCAGTCACTACTC
TAGACCGGGTGAGAAATTAATCCATGTCTGTGAACGGCTTGTGCGACTTA
TTCAAGGAGTCACAACTTCTGGTCCTGTGAGACCTATGGTGGACTCCATA
TTTGCATCGGATAGAGGCTACAACGTCAGAGCGAAAATCGACGACATCAA
CGATAGGCTAGATGCGACAGGACTTGGTACGCATAAAAGAAGTATGGAAT
ATCCGTTGGTTTTGAAGATGGAGCAATTTGGTAAAAACACAAAGGCGTTG
TTGTAAGTTAACAGGGCTGTAGAGCTATATACAGCGCTCGGAGGAAGCCA
AACACATTGTCTGGTCGCGCTGTGGAAGCCGCAGTGTATCGTGAGAGCTT
CAGTGGCCGCATTGCAGCGATATACCATAACAACGACCGTTTGTTTTCTG
CCACAAAGTTTACTCTCATCCCAAGAGCTGGCCATCAGAAGCAATCCAGT
TCAAAGCAAAGAGAACTTTTTCACCTTGTCTTTGAAGGTTCCGTCACAAC
AAATGTTAAAAACGACGGTTATGAAAACGATATTGCCGTTTCTCTACCGA
GAATGAAAGTTAGTCCGGTAATATCTCGTGTGGATGAAATAAAACTATTA
CAGTCGCAGGACCCAGGGTGGTTTCTAAGCAGGGCATTTCAGTTTACTTC
ACGTACGTGTCAAGCGTTTCTGCGTGCGTCGGCGCAAGAAAACGAGGACT
GCATGGAAGCACTTCCATTCCTGGTGGCTGGAAAGCATATTGGAAATACT
GATATCATGTTTCCCACTGGCGAAGAGGAGAGGAAACAGGGCTTGACGTC
AAAGCTAGTAGTATTTTGTCATACAATGAATGTTGTCGTAACCTCTGCGC
CTAGCGCGGTACATAAAAATGATGCAGTATCGAACATTATGTCTGCAACA
AATGGGACGCTCCAATCCAGGACCAAGAACGACATATTGTCAATGATGAG
CGCTATAGGGCATCGACAATCACAATCACTGCGCAAGTCGCAGCTAATTT
AGAAAGTTTTAGAACTTCAGGAAAGTGTTCATAATGGAGAACTCACATTG
ACCATACCCTCTTCAGCAGATCTCACACCCTTCCAAAGACGAGAATTTAA
AACACAAAAACTTCTCGATCGACTTTACAGGAAGTCACTAAGCTCGTGGG
TCATGAAGCCATTGGTTAGCACAGCTGGAATGAAGGAAGACAGCTTCAAT
GAAACGCAGGTACTAAAGGCTCTGCCTCTCGTCGTTGATAACAATCTGGT
CAATAACGGCACATTTTTTTGCTCTAACGATCCACAGTTTGTAGAACGAA
AATCCAAAGTCAAGTATATTCGAACAACTGGATCGGTGTCTTCGAAAACA
GATCCTATGATTTCCGACAGCCCTGACGCCGTGCTTTGATTTTCAGACAA
TTACGATGAACTTGTTGCATGCGAAGTGGAAATCAAGACAATGACAGCGT
TAAATACAATTGAAGCCGCACGACAGAGGAGACACAGCCTTGCCCCAATT
ACGTATATCAACGACATCGGACAGAATGAGGAATCCTTGAAACAGTTTCA
AGCTCTTGTTCCGTCCACCGAGTATCGCATTCAGTGTGTGCATCACGCTT
TATCCTTCAATCTGAATTACGTCATGTTTGTTCTGACCAAGGGTAGTAAT
TGTGGGGTTGGTCAAGTGATATACATTGCAATCTTGGAGTTTCATAAGAG
TTTGAAGGCAATGTATAGCTATATACTGGGATCAATTCATGTCGGAGCAT
TTGAATGGGTTGGAAAAGGAGCTTCTGCCATAACGAATGAGTACGATGAC
CTTTTACAGACATCTCATGCTTCTGACTTACATTCATATGCATCGTATTA
TAGTTTAAGTCAAGCTTACAAGACTCTTGCTCGCAATTGTGGTACTTTGC
CTCCGGCAAGGATGATTCGTCCAACTGCGTTCGTTTACTGTAATTACCTG
AAAGGAGGTGTCAATGAGTTTAGCAGGGCAATGACTAGCCTCTGTTATAA
AAACAGTGGTGAAAATCCCATCGTCAGCATCATTGGGCGCTTTCTATGCG
CCCAAGTCAACAACGCTGCTGTTGTTCATTGTTTGTCAGTAGCAAGGCGT
AAAGGACGACTACCGGATCAGTTCGAGGAGATGCAGAGGAAAGGGGTATA
G
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Coding sequence (CDS) from alignment at tig00004370_pilon:3948080..3950580-

>Gchil9413.t1 ID=Gchil9413.t1|Name=Gchil9413.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1599bp|location=Sequence derived from alignment at tig00004370_pilon:3948080..3950580- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATTACAGGTACACGCTACTCTAAGATCTGGTCGGCTCTGTCTTC
CACAGTCGGCCGAAGGCAGAGAGTGGAGGACTTTGTTGAAGGATGGTTCA
ATTTCCCACAAAGAGCGAACGCAATGATTACTGAACTCGAAGACGAGTTG
GCGTCAGTGAATCGCACTTTTCTGTATGTGCCTGGAATCACTATTTTCAG
TTTTGAAGACGACCATCAACGGCTGCGATCCAAAGCTGTTGCTCAGTTCC
CAGCCATGTGTCATATAAACAATCCTCAAAAGGCTCTAGGTCCACTTAAT
AACGCAATTTGTTCAGCTCTGAACCCTGTGTTTCTGGCCAGTCACTACTC
TAGACCGGGTGAGAAATTAATCCATGTCTGTGAACGGCTTGTGCGACTTA
TTCAAGGAGTCACAACTTCTGGTCCTGTGAGACCTATGGTGGACTCCATA
TTTGCATCGGATAGAGGCTACAACGTCAGAGCGAAAATCGACGACATCAA
CGATAGGCTAGATGCGACAGGACTTGTGTATCGTGAGAGCTTCAGTGGCC
GCATTGCAGCGATATACCATAACAACGACCGTTTGTTTTCTGCCACAAAG
TTTACTCTCATCCCAAGAGCTGGCCATCAGAAGCAATCCAGTTCAAAGCA
AAGAGAACTTTTTCACCTTGTCTTTGAAGGTTCCGTCACAACAAATGTTA
AAAACGACGGTTATGAAAACGATATTGCCGTTTCTCTACCGAGAATGAAA
GTTAGTCCGGTAATATCTCGTGTGGATGAAATAAAACTATTACAGTCGCA
GGACCCAGGGTGGTTTCTAAGCAGGGCATTTCAGTTTACTTCACACAATT
ACGATGAACTTGTTGCATGCGAAGTGGAAATCAAGACAATGACAGCGTTA
AATACAATTGAAGCCGCACGACAGAGGAGACACAGCCTTGCCCCAATTAC
GTATATCAACGACATCGGACAGAATGAGGAATCCTTGAAACAGTTTCAAG
CTCTTGTTCCGTCCACCGAGTATCGCATTCAGTGTGTGCATCACGCTTTA
TCCTTCAATCTGAATTACGTCATGTTTGTTCTGACCAAGGGTAGTAATTG
TGGGGTTGGTCAAGTGATATACATTGCAATCTTGGAGTTTCATAAGAGTT
TGAAGGCAATGTATAGCTATATACTGGGATCAATTCATGTCGGAGCATTT
GAATGGGTTGGAAAAGGAGCTTCTGCCATAACGAATGAGTACGATGACCT
TTTACAGACATCTCATGCTTCTGACTTACATTCATATGCATCGTATTATA
GTTTAAGTCAAGCTTACAAGACTCTTGCTCGCAATTGTGGTACTTTGCCT
CCGGCAAGGATGATTCGTCCAACTGCGTTCGTTTACTGTAATTACCTGAA
AGGAGGTGTCAATGAGTTTAGCAGGGCAATGACTAGCCTCTGTTATAAAA
ACAGTGGTGAAAATCCCATCGTCAGCATCATTGGGCGCTTTCTATGCGCC
CAAGTCAACAACGCTGCTGTTGTTCATTGTTTGTCAGTAGCAAGGCGTAA
AGGACGACTACCGGATCAGTTCGAGGAGATGCAGAGGAAAGGGGTATAG
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