Gchil9407.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9407.t1
Unique NameGchil9407.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length157
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:3892356..3892826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_034_00129.1
PFAMsCupin_1
Max annot lvl35493|Streptophyta
Evalue2.96e-11
EggNOG OGs2BYKQ@1|root,2QQ4A@2759|Eukaryota,37KIT@33090|Viridiplantae,3G7XG@35493|Streptophyta
Descriptiongermin-like protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9407Gchil9407Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 3892356..3892826 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9407.t1.stop1Gchil9407.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 3892356..3892358 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9407.t1.CDS1Gchil9407.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 3892356..3892826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9407.t1.exon1Gchil9407.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 3892356..3892826 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9407.t1.start1Gchil9407.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 3892824..3892826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9407.t1Gchil9407.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 3892356..3892826 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9407.t1 ID=Gchil9407.t1|Name=Gchil9407.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=157bp
MFASAWGSIPSFLTQTNPEIRSKLADKDFSINPENGIILNTPNFRARIAD
VTNFPALGAQDVQTQIVRVTLKAKQTFIPHYHPRGTEVLNALAGKFRVTF
KFEGLNPRSVSNVIHAGESTVFPQGLIHETVCISHHDCEFLSTFNSADPG
LVPVSL*
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spliced messenger RNA

>Gchil9407.t1 ID=Gchil9407.t1|Name=Gchil9407.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00004370_pilon:3892356..3892826- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGCGTCCGCCTGGGGGTCAATTCCTAGTTTTCTGACGCAAACCAA
CCCCGAGATTCGTTCCAAATTGGCTGACAAGGACTTTAGCATTAACCCAG
AGAACGGAATTATCCTAAATACTCCCAACTTCCGTGCAAGAATTGCGGAT
GTGACTAATTTCCCCGCTCTTGGCGCCCAGGATGTGCAGACTCAGATCGT
GAGGGTGACTCTCAAGGCCAAACAAACTTTCATTCCTCACTATCATCCCA
GAGGAACTGAGGTGCTCAATGCTCTTGCAGGAAAGTTCCGTGTGACTTTT
AAGTTTGAGGGATTGAATCCACGTTCGGTGTCTAATGTGATTCATGCGGG
AGAGTCTACGGTGTTTCCACAGGGACTTATTCACGAGACTGTTTGTATCA
GTCATCATGATTGCGAATTTCTTTCTACGTTCAACTCTGCGGATCCTGGA
CTTGTGCCGGTGAGCCTCTAG
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protein sequence of Gchil9407.t1

>Gchil9407.t1 ID=Gchil9407.t1|Name=Gchil9407.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=157bp
MFASAWGSIPSFLTQTNPEIRSKLADKDFSINPENGIILNTPNFRARIAD
VTNFPALGAQDVQTQIVRVTLKAKQTFIPHYHPRGTEVLNALAGKFRVTF
KFEGLNPRSVSNVIHAGESTVFPQGLIHETVCISHHDCEFLSTFNSADPG
LVPVSL*
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mRNA from alignment at tig00004370_pilon:3892356..3892826-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9407.t1 ID=Gchil9407.t1|Name=Gchil9407.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp|location=Sequence derived from alignment at tig00004370_pilon:3892356..3892826- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGCGTCCGCCTGGGGGTCAATTCCTAGTTTTCTGACGCAAACCAA
CCCCGAGATTCGTTCCAAATTGGCTGACAAGGACTTTAGCATTAACCCAG
AGAACGGAATTATCCTAAATACTCCCAACTTCCGTGCAAGAATTGCGGAT
GTGACTAATTTCCCCGCTCTTGGCGCCCAGGATGTGCAGACTCAGATCGT
GAGGGTGACTCTCAAGGCCAAACAAACTTTCATTCCTCACTATCATCCCA
GAGGAACTGAGGTGCTCAATGCTCTTGCAGGAAAGTTCCGTGTGACTTTT
AAGTTTGAGGGATTGAATCCACGTTCGGTGTCTAATGTGATTCATGCGGG
AGAGTCTACGGTGTTTCCACAGGGACTTATTCACGAGACTGTTTGTATCA
GTCATCATGATTGCGAATTTCTTTCTACGTTCAACTCTGCGGATCCTGGA
CTTGTGCCGGTGAGCCTCTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:3892356..3892826-

>Gchil9407.t1 ID=Gchil9407.t1|Name=Gchil9407.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=471bp|location=Sequence derived from alignment at tig00004370_pilon:3892356..3892826- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTGCGTCCGCCTGGGGGTCAATTCCTAGTTTTCTGACGCAAACCAA
CCCCGAGATTCGTTCCAAATTGGCTGACAAGGACTTTAGCATTAACCCAG
AGAACGGAATTATCCTAAATACTCCCAACTTCCGTGCAAGAATTGCGGAT
GTGACTAATTTCCCCGCTCTTGGCGCCCAGGATGTGCAGACTCAGATCGT
GAGGGTGACTCTCAAGGCCAAACAAACTTTCATTCCTCACTATCATCCCA
GAGGAACTGAGGTGCTCAATGCTCTTGCAGGAAAGTTCCGTGTGACTTTT
AAGTTTGAGGGATTGAATCCACGTTCGGTGTCTAATGTGATTCATGCGGG
AGAGTCTACGGTGTTTCCACAGGGACTTATTCACGAGACTGTTTGTATCA
GTCATCATGATTGCGAATTTCTTTCTACGTTCAACTCTGCGGATCCTGGA
CTTGTGCCGGTGAGCCTCTAG
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