Gchil9206.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9206.t1
Unique Name	Gchil9206.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	544

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:2566579..2568210 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010667784.1
PFAMs	DIRP,Myb_DNA-binding
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K21773
KEGG Pathway	ko04218,map04218
Evalue	2.18e-06
EggNOG OGs	KOG1019@1\|root,KOG1019@2759\|Eukaryota,37KSW@33090\|Viridiplantae,3G9MC@35493\|Streptophyta
Description	Protein ALWAYS EARLY
COG category	K
BRITE	ko00000,ko00001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9206	Gchil9206	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 2566579..2568210 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9206.t1.start1	Gchil9206.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 2566579..2566581 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9206.t1.CDS1	Gchil9206.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 2566579..2568210 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9206.t1.exon1	Gchil9206.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 2566579..2568210 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9206.t1.stop1	Gchil9206.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 2568208..2568210 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9206.t1	Gchil9206.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 2566579..2568210 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:2566579..2568210+
coding sequence from alignment at tig00004370_pilon:2566579..2568210+

mRNA sequence

>Gchil9206.t1 ID=Gchil9206.t1|Name=Gchil9206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=544bp
MRRKTAPPPAPPPKKRARAPSAPERVAASPRALHWAHAEWFQSAIDEPYF
THSDFHAVVASRMVQLSDMLSTRLTRLQLARIRAAMCNMLPGGFVQPRRF
SPAFLFAEREELSMYRNDARRVLRGLDLLPSIDPTTGDALPQNWWSRHRC
APPTPLQRGAHILVRTCAPPQNGHTLAHLRIRPAIFLSLEADNKNRIRFQ
DDATEHIVSDLDVMLHPSSSIGSDSLAQSPLLPNAHSLARSPSSPPFPFS
PSAMPTPVFDFSHFPEASQSVIQLYQSPRPTLISPRKTLEVKNQCGQNFE
CEVDFRRIAESMQLLDRKEQLLSSLRMLNDAVSATTTPGAPPSEATQAKF
DFILAALDRVNTQINLHVEPDRSTPHPSPPSLFLSTDMESGKLDETPEKN
QPMSVSLFKMAPTSPTPPKREGGSPGETVPRSPRLRPENMSRNVDFRGAT
GAAMLAKALTKAALAKLHPDNGIKTAPTPIRADVMECVSACVAVLVRART
TREIHCVNELIDGLRSRFPASSEAIDAIYAAARVLETSSSDSA*

spliced messenger RNA

>Gchil9206.t1 ID=Gchil9206.t1|Name=Gchil9206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00004370_pilon:2566579..2568210+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCGAAAGACTGCTCCTCCGCCAGCGCCCCCGCCGAAGAAgcgcgc
gcgcgcgccgtccgccccggagcgcgttgccgcgtccccgcgcgcCCTAC
ATTGGGCGCATGCCGAGTGGTTTCAGAGCGCCATCGACGAGCCTTACTTC
ACTCACTCCGACTTCCATGCTGTCGTCGCCAGCCGCATGGTCCAGCTCTC
CGATATGCTCTCCACGCGACTCACGCGTCTTCAACTCGCGCGCATTCGGG
CCGCCATGTGCAACATGCTGCCCGGCGGCTTTGTGCAACCGCGTAGATTC
TCCCCCGCCTTCTTGTTTGCTGAGCGCGAGGAACTTTCCATGTATCGCAA
CGATGCACGTCGTGTGCTTCGCGGACTGGACTTGCTCCCGTCCATCGACC
CAACCACAGGCGACGCACTCCCACAGAATTGGTGGTCGCGCCATCGATGC
GCCCCGCCAACTCCACTGCAGCGAGGTGCCCACATTCTTGTCCGCACCTG
TGCGCCCCCGCAGAATGGCCACACACTTGCCCACTTGCGCATTCGTCCCG
CAATATTCCTCTCGTTGGAAGCAGACAACAAAAACCGTATTCGTTTCCAA
GACGACGCCACGGAACACATTGTTTCAGACTTGGATGTCATGTTGCATCC
GTCCTCTTCGATTGGATCCGATTCCCTTGCACAGTCACCGCTATTACCGA
ATGCGCACTCATTGGCCCGGtcccccagttcacctccattccccttctcc
ccatccgccatgccAACGCCCGTATTCGACTTCTCTCATTTTCCCGAAGC
GTCGCAAAGCGTTATTCAACTATATCAATCCCCGCGACCCACGCTTATTT
CGCCTCGCAAAACACTTGAGGTCAAGAACCAATGCGGTCAAAACTTTGAG
TGTGAGGTTGACTTCCGTCGAATTGCCGAGTCCATGCAACTCCTGGACCG
AAAGGAACAGCTTCTCTCCTCTCTGAGAATGCTCAACGATGCCGTGTCCG
CAACCACCACGCCTGGAGCACCCCCGTCAGAGGCCACCCAAGCAAAATTC
GATTTCATACTCGCTGCATTAGATCGCGTCAACACCCAAATCAATTTGCA
CGTTGAGCCTGACCGTTCCACTCCACATCCATCCCCGCCGAGCCTTTTTC
TCAGTACTGATATGGAATCAGGCAAACTAGATGAAACACCAGAAAAAAAT
CAACCAATGTCTGTTTCTTTGTTCAAGATGGCACCCACATCCCCAACACC
ACCAAAAAGGGAAGGTGGTTCTCCTGGCGAAACTGTACCAAGATCTCCCC
GTTTGCGTCCAGAAAACATGTCTAGAAACGTTGACTTTCGTGGGGCTACT
GGGGCAGCTATGTTGGCTAAGGCTCTTACCAAGGCTGCTCTCGCCAAGCT
TCATCCAGACAACGGCATTAAAACGGCACCAACTCCTATAAGAGCGGATG
TTATGGAGTGCGTCAGCGCTTGTGTGGCAGTGCTTGTTCGGGCAAGAACC
ACACGTGAGATTCACTGTGTCAACGAACTTATTGATGGACTGCGCTCTCG
TTTTCCGGCCAGCTCTGAAGCTATTGACGCGATTTATGCGGCTGCCAGAG
TTCTGGAGACCAGCTCGAGTGACAGTGCGTAG

protein sequence of Gchil9206.t1

>Gchil9206.t1 ID=Gchil9206.t1|Name=Gchil9206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=544bp
MRRKTAPPPAPPPKKRARAPSAPERVAASPRALHWAHAEWFQSAIDEPYF
THSDFHAVVASRMVQLSDMLSTRLTRLQLARIRAAMCNMLPGGFVQPRRF
SPAFLFAEREELSMYRNDARRVLRGLDLLPSIDPTTGDALPQNWWSRHRC
APPTPLQRGAHILVRTCAPPQNGHTLAHLRIRPAIFLSLEADNKNRIRFQ
DDATEHIVSDLDVMLHPSSSIGSDSLAQSPLLPNAHSLARSPSSPPFPFS
PSAMPTPVFDFSHFPEASQSVIQLYQSPRPTLISPRKTLEVKNQCGQNFE
CEVDFRRIAESMQLLDRKEQLLSSLRMLNDAVSATTTPGAPPSEATQAKF
DFILAALDRVNTQINLHVEPDRSTPHPSPPSLFLSTDMESGKLDETPEKN
QPMSVSLFKMAPTSPTPPKREGGSPGETVPRSPRLRPENMSRNVDFRGAT
GAAMLAKALTKAALAKLHPDNGIKTAPTPIRADVMECVSACVAVLVRART
TREIHCVNELIDGLRSRFPASSEAIDAIYAAARVLETSSSDSA*

mRNA from alignment at tig00004370_pilon:2566579..2568210+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9206.t1 ID=Gchil9206.t1|Name=Gchil9206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1632bp|location=Sequence derived from alignment at tig00004370_pilon:2566579..2568210+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCGAAAGACTGCTCCTCCGCCAGCGCCCCCGCCGAAGAAgcgcgc
gcgcgcgccgtccgccccggagcgcgttgccgcgtccccgcgcgcCCTAC
ATTGGGCGCATGCCGAGTGGTTTCAGAGCGCCATCGACGAGCCTTACTTC
ACTCACTCCGACTTCCATGCTGTCGTCGCCAGCCGCATGGTCCAGCTCTC
CGATATGCTCTCCACGCGACTCACGCGTCTTCAACTCGCGCGCATTCGGG
CCGCCATGTGCAACATGCTGCCCGGCGGCTTTGTGCAACCGCGTAGATTC
TCCCCCGCCTTCTTGTTTGCTGAGCGCGAGGAACTTTCCATGTATCGCAA
CGATGCACGTCGTGTGCTTCGCGGACTGGACTTGCTCCCGTCCATCGACC
CAACCACAGGCGACGCACTCCCACAGAATTGGTGGTCGCGCCATCGATGC
GCCCCGCCAACTCCACTGCAGCGAGGTGCCCACATTCTTGTCCGCACCTG
TGCGCCCCCGCAGAATGGCCACACACTTGCCCACTTGCGCATTCGTCCCG
CAATATTCCTCTCGTTGGAAGCAGACAACAAAAACCGTATTCGTTTCCAA
GACGACGCCACGGAACACATTGTTTCAGACTTGGATGTCATGTTGCATCC
GTCCTCTTCGATTGGATCCGATTCCCTTGCACAGTCACCGCTATTACCGA
ATGCGCACTCATTGGCCCGGtcccccagttcacctccattccccttctcc
ccatccgccatgccAACGCCCGTATTCGACTTCTCTCATTTTCCCGAAGC
GTCGCAAAGCGTTATTCAACTATATCAATCCCCGCGACCCACGCTTATTT
CGCCTCGCAAAACACTTGAGGTCAAGAACCAATGCGGTCAAAACTTTGAG
TGTGAGGTTGACTTCCGTCGAATTGCCGAGTCCATGCAACTCCTGGACCG
AAAGGAACAGCTTCTCTCCTCTCTGAGAATGCTCAACGATGCCGTGTCCG
CAACCACCACGCCTGGAGCACCCCCGTCAGAGGCCACCCAAGCAAAATTC
GATTTCATACTCGCTGCATTAGATCGCGTCAACACCCAAATCAATTTGCA
CGTTGAGCCTGACCGTTCCACTCCACATCCATCCCCGCCGAGCCTTTTTC
TCAGTACTGATATGGAATCAGGCAAACTAGATGAAACACCAGAAAAAAAT
CAACCAATGTCTGTTTCTTTGTTCAAGATGGCACCCACATCCCCAACACC
ACCAAAAAGGGAAGGTGGTTCTCCTGGCGAAACTGTACCAAGATCTCCCC
GTTTGCGTCCAGAAAACATGTCTAGAAACGTTGACTTTCGTGGGGCTACT
GGGGCAGCTATGTTGGCTAAGGCTCTTACCAAGGCTGCTCTCGCCAAGCT
TCATCCAGACAACGGCATTAAAACGGCACCAACTCCTATAAGAGCGGATG
TTATGGAGTGCGTCAGCGCTTGTGTGGCAGTGCTTGTTCGGGCAAGAACC
ACACGTGAGATTCACTGTGTCAACGAACTTATTGATGGACTGCGCTCTCG
TTTTCCGGCCAGCTCTGAAGCTATTGACGCGATTTATGCGGCTGCCAGAG
TTCTGGAGACCAGCTCGAGTGACAGTGCGTAG

Coding sequence (CDS) from alignment at tig00004370_pilon:2566579..2568210+

>Gchil9206.t1 ID=Gchil9206.t1|Name=Gchil9206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1632bp|location=Sequence derived from alignment at tig00004370_pilon:2566579..2568210+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGTCGAAAGACTGCTCCTCCGCCAGCGCCCCCGCCGAAGAAgcgcgc
gcgcgcgccgtccgccccggagcgcgttgccgcgtccccgcgcgcCCTAC
ATTGGGCGCATGCCGAGTGGTTTCAGAGCGCCATCGACGAGCCTTACTTC
ACTCACTCCGACTTCCATGCTGTCGTCGCCAGCCGCATGGTCCAGCTCTC
CGATATGCTCTCCACGCGACTCACGCGTCTTCAACTCGCGCGCATTCGGG
CCGCCATGTGCAACATGCTGCCCGGCGGCTTTGTGCAACCGCGTAGATTC
TCCCCCGCCTTCTTGTTTGCTGAGCGCGAGGAACTTTCCATGTATCGCAA
CGATGCACGTCGTGTGCTTCGCGGACTGGACTTGCTCCCGTCCATCGACC
CAACCACAGGCGACGCACTCCCACAGAATTGGTGGTCGCGCCATCGATGC
GCCCCGCCAACTCCACTGCAGCGAGGTGCCCACATTCTTGTCCGCACCTG
TGCGCCCCCGCAGAATGGCCACACACTTGCCCACTTGCGCATTCGTCCCG
CAATATTCCTCTCGTTGGAAGCAGACAACAAAAACCGTATTCGTTTCCAA
GACGACGCCACGGAACACATTGTTTCAGACTTGGATGTCATGTTGCATCC
GTCCTCTTCGATTGGATCCGATTCCCTTGCACAGTCACCGCTATTACCGA
ATGCGCACTCATTGGCCCGGtcccccagttcacctccattccccttctcc
ccatccgccatgccAACGCCCGTATTCGACTTCTCTCATTTTCCCGAAGC
GTCGCAAAGCGTTATTCAACTATATCAATCCCCGCGACCCACGCTTATTT
CGCCTCGCAAAACACTTGAGGTCAAGAACCAATGCGGTCAAAACTTTGAG
TGTGAGGTTGACTTCCGTCGAATTGCCGAGTCCATGCAACTCCTGGACCG
AAAGGAACAGCTTCTCTCCTCTCTGAGAATGCTCAACGATGCCGTGTCCG
CAACCACCACGCCTGGAGCACCCCCGTCAGAGGCCACCCAAGCAAAATTC
GATTTCATACTCGCTGCATTAGATCGCGTCAACACCCAAATCAATTTGCA
CGTTGAGCCTGACCGTTCCACTCCACATCCATCCCCGCCGAGCCTTTTTC
TCAGTACTGATATGGAATCAGGCAAACTAGATGAAACACCAGAAAAAAAT
CAACCAATGTCTGTTTCTTTGTTCAAGATGGCACCCACATCCCCAACACC
ACCAAAAAGGGAAGGTGGTTCTCCTGGCGAAACTGTACCAAGATCTCCCC
GTTTGCGTCCAGAAAACATGTCTAGAAACGTTGACTTTCGTGGGGCTACT
GGGGCAGCTATGTTGGCTAAGGCTCTTACCAAGGCTGCTCTCGCCAAGCT
TCATCCAGACAACGGCATTAAAACGGCACCAACTCCTATAAGAGCGGATG
TTATGGAGTGCGTCAGCGCTTGTGTGGCAGTGCTTGTTCGGGCAAGAACC
ACACGTGAGATTCACTGTGTCAACGAACTTATTGATGGACTGCGCTCTCG
TTTTCCGGCCAGCTCTGAAGCTATTGACGCGATTTATGCGGCTGCCAGAG
TTCTGGAGACCAGCTCGAGTGACAGTGCGTAG