Gchil9204.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil9204.t1
Unique Name	Gchil9204.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	560

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:2561510..2563189 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707609.1
PFAMs	PP2C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14803,ko:K17506
Evalue	8.08e-43
EggNOG OGs	COG0631@1\|root,KOG0698@2759\|Eukaryota
EC	3.1.3.16
Description	protein serine/threonine phosphatase activity
COG category	T
BRITE	ko00000,ko01000,ko01009,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil9204	Gchil9204	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 2561510..2563189 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9204.t1.start1	Gchil9204.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 2561510..2561512 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9204.t1.CDS1	Gchil9204.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 2561510..2563189 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9204.t1.exon1	Gchil9204.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 2561510..2563189 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9204.t1.stop1	Gchil9204.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 2563187..2563189 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil9204.t1	Gchil9204.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 2561510..2563189 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:2561510..2563189+
coding sequence from alignment at tig00004370_pilon:2561510..2563189+

mRNA sequence

>Gchil9204.t1 ID=Gchil9204.t1|Name=Gchil9204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=560bp
MSRERSKQRRHLLYDDPVECGIFSASKSRRSPDETRTVSEVHRTPFQIAT
YGIFAGHGGVAAAELCARNFVPTLLTDSVLKRDSEAAIRNACQALEAFVL
AKSALDRAYYGTTLLFTMIRGQDLYIANVGNSRAVLATKDGAQAITQEHD
GSNAEEVSRVTNAGGYFEDGKVNNLIPITRSIGDLELKDRKHITFPNRRM
TEDIIISVPDIYQRKLSSRDEFLVMATAEVWENLSNKVVVQTIRDSLRRG
DTPRMASKRVVHAAASAGAKKHITVMILVFPTSTRGVHDKPVAPVSGRRG
SRPSSLKRHSSNAEQELLAVKNATQVPAFVLAAQAQEQNRAAIQTVIPET
SPITSPSGQALRSPIGATGIEPKKEDQFTSAPYLSLNRSAGSGSSRISYR
PRRGEADGSPVKQGTSRHRSRGGSNRTHTVLGTTAAGSYGQVVKEPVPRR
HREVTRPPPVVIEHRGQRDRENAMSPRAKTVMTSRISELTASGATMGRES
SHGFEDPRHGTGQPFDDAPRFADFNSAGPSKVRYREDGTVHGIRFGFWRE
IGRALGRRR*

spliced messenger RNA

>Gchil9204.t1 ID=Gchil9204.t1|Name=Gchil9204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00004370_pilon:2561510..2563189+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCGCGAGAGGTCGAAACAACGCCGCCATTTGTTATATGATGATCC
TGTGGAATGTGGGATATTCTCAGCTTCAAAGAGCAGAAGAAGTCCAGACG
AGACGCGTACGGTGTCTGAGGTTCATCGCACTCCATTTCAAATTGCAACA
TACGGTATATTTGCTGGACATGGGGGTGTGGCGGCGGCCGAACTATGTGC
TCGCAACTTTGTCCCGACGCTACTAACAGATTCTGTGCTGAAGAGGGATT
CAGAAGCGGCGATTCGAAATGCATGCCAAGCGTTGGAGGCCTTCGTTTTG
GCAAAGTCAGCTCTTGATCGAGCATACTATGGAACAACTTTGCTGTTCAC
CATGATACGAGGCCAAGATCTCTACATTGCAAACGTGGGAAACTCACGTG
CGGTTCTTGCTACCAAAGACGGGGCTCAAGCCATCACACAGGAACACGAC
GGATCAAATGCCGAAGAGGTTTCTAGAGTAACCAATGCCGGAGGTTACTT
TGAGGATGGAAAGGTTAACAATCTGATCCCTATAACAAGGTCGATTGGTG
ATCTTGAGTTAAAAGACCGAAAGCACATTACTTTCCCGAACAGACGAATG
ACAGAGGATATCATAATCTCAGTGCCAGACATATACCAGCGAAAGCTATC
ATCCCGCGACGAATTCCTGGTCATGGCAACTGCCGAAGTGTGGGAAAATT
TGTCTAACAAAGTAGTAGTGCAGACTATTAGGGACTCTTTGCGACGCGGA
GACACTCCGAGAATGGCCTCCAAGAGAGTTGTGCATGCTGCTGCCTCCGC
AGGTGCCAAAAAGCATATTACGGTTATGATTCTTGTATTTCCTACTTCAA
CCAGAGGAGTTCATGACAAACCAGTGGCCCCAGTCAGTGGCAGGCGTGGT
TCGCGACCGAGTTCTCTGAAGAGGCATAGCTCAAACGCTGAACAGGAACT
GCTAGCCGTAAAAAATGCAACACAAGTTCCTGCTTTCGTCTTGGCGGCTC
AAGCACAAGAACAGAACCGCGCAGCCATTCAGACGGTAATACCGGAAACT
TCACCGATCACGTCGCCTTCTGGCCAGGCGTTACGAAGCCCGATCGGTGC
GACTGGGATCGAGCCCAAGAAAGAGGATCAATTCACATCAGCACCTTATC
TTTCCCTCAATAGGTCTGCTGGGTCAGGAAGCAGTCGTATTTCCTATCGG
CCAAGACGGGGCGAAGCGGATGGGTCTCCAGTGAAACAAGGTACATCGCG
ACACCGGTCACGGGGTGGATCCAACAGAACCCACACTGTTCTTGGGACAA
CTGCAGCCGGATCATACGGGCAAGTTGTCAAAGAACCGGTACCAAGAAGG
CATCGAGAAGTGACAAGGCCACCCCCTGTGGTGATCGAACATCGAGGGCA
AAGAGATCGAGAAAACGCCATGTCCCCTCGCGCAAAAACGGTGATGACAT
CAAGAATATCAGAGCTTACGGCCAGTGGAGCAACAATGGGTAGGGAATCG
TCGCATGGGTTTGAAGATCCAAGACATGGCACGGGACAACCGTTCGACGA
TGCTCCCAGATTTGCGGATTTCAACAGTGCAGGACCATCAAAGGTTAGAT
ATCGAGAAGATGGCACTGTTCATGGAATTCGCTTTGGGTTCTGGAGGGAA
ATCGGAAGAGCTCTTGGAAGAAGAAGATGA

protein sequence of Gchil9204.t1

>Gchil9204.t1 ID=Gchil9204.t1|Name=Gchil9204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=560bp
MSRERSKQRRHLLYDDPVECGIFSASKSRRSPDETRTVSEVHRTPFQIAT
YGIFAGHGGVAAAELCARNFVPTLLTDSVLKRDSEAAIRNACQALEAFVL
AKSALDRAYYGTTLLFTMIRGQDLYIANVGNSRAVLATKDGAQAITQEHD
GSNAEEVSRVTNAGGYFEDGKVNNLIPITRSIGDLELKDRKHITFPNRRM
TEDIIISVPDIYQRKLSSRDEFLVMATAEVWENLSNKVVVQTIRDSLRRG
DTPRMASKRVVHAAASAGAKKHITVMILVFPTSTRGVHDKPVAPVSGRRG
SRPSSLKRHSSNAEQELLAVKNATQVPAFVLAAQAQEQNRAAIQTVIPET
SPITSPSGQALRSPIGATGIEPKKEDQFTSAPYLSLNRSAGSGSSRISYR
PRRGEADGSPVKQGTSRHRSRGGSNRTHTVLGTTAAGSYGQVVKEPVPRR
HREVTRPPPVVIEHRGQRDRENAMSPRAKTVMTSRISELTASGATMGRES
SHGFEDPRHGTGQPFDDAPRFADFNSAGPSKVRYREDGTVHGIRFGFWRE
IGRALGRRR*

mRNA from alignment at tig00004370_pilon:2561510..2563189+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil9204.t1 ID=Gchil9204.t1|Name=Gchil9204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00004370_pilon:2561510..2563189+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCGCGAGAGGTCGAAACAACGCCGCCATTTGTTATATGATGATCC
TGTGGAATGTGGGATATTCTCAGCTTCAAAGAGCAGAAGAAGTCCAGACG
AGACGCGTACGGTGTCTGAGGTTCATCGCACTCCATTTCAAATTGCAACA
TACGGTATATTTGCTGGACATGGGGGTGTGGCGGCGGCCGAACTATGTGC
TCGCAACTTTGTCCCGACGCTACTAACAGATTCTGTGCTGAAGAGGGATT
CAGAAGCGGCGATTCGAAATGCATGCCAAGCGTTGGAGGCCTTCGTTTTG
GCAAAGTCAGCTCTTGATCGAGCATACTATGGAACAACTTTGCTGTTCAC
CATGATACGAGGCCAAGATCTCTACATTGCAAACGTGGGAAACTCACGTG
CGGTTCTTGCTACCAAAGACGGGGCTCAAGCCATCACACAGGAACACGAC
GGATCAAATGCCGAAGAGGTTTCTAGAGTAACCAATGCCGGAGGTTACTT
TGAGGATGGAAAGGTTAACAATCTGATCCCTATAACAAGGTCGATTGGTG
ATCTTGAGTTAAAAGACCGAAAGCACATTACTTTCCCGAACAGACGAATG
ACAGAGGATATCATAATCTCAGTGCCAGACATATACCAGCGAAAGCTATC
ATCCCGCGACGAATTCCTGGTCATGGCAACTGCCGAAGTGTGGGAAAATT
TGTCTAACAAAGTAGTAGTGCAGACTATTAGGGACTCTTTGCGACGCGGA
GACACTCCGAGAATGGCCTCCAAGAGAGTTGTGCATGCTGCTGCCTCCGC
AGGTGCCAAAAAGCATATTACGGTTATGATTCTTGTATTTCCTACTTCAA
CCAGAGGAGTTCATGACAAACCAGTGGCCCCAGTCAGTGGCAGGCGTGGT
TCGCGACCGAGTTCTCTGAAGAGGCATAGCTCAAACGCTGAACAGGAACT
GCTAGCCGTAAAAAATGCAACACAAGTTCCTGCTTTCGTCTTGGCGGCTC
AAGCACAAGAACAGAACCGCGCAGCCATTCAGACGGTAATACCGGAAACT
TCACCGATCACGTCGCCTTCTGGCCAGGCGTTACGAAGCCCGATCGGTGC
GACTGGGATCGAGCCCAAGAAAGAGGATCAATTCACATCAGCACCTTATC
TTTCCCTCAATAGGTCTGCTGGGTCAGGAAGCAGTCGTATTTCCTATCGG
CCAAGACGGGGCGAAGCGGATGGGTCTCCAGTGAAACAAGGTACATCGCG
ACACCGGTCACGGGGTGGATCCAACAGAACCCACACTGTTCTTGGGACAA
CTGCAGCCGGATCATACGGGCAAGTTGTCAAAGAACCGGTACCAAGAAGG
CATCGAGAAGTGACAAGGCCACCCCCTGTGGTGATCGAACATCGAGGGCA
AAGAGATCGAGAAAACGCCATGTCCCCTCGCGCAAAAACGGTGATGACAT
CAAGAATATCAGAGCTTACGGCCAGTGGAGCAACAATGGGTAGGGAATCG
TCGCATGGGTTTGAAGATCCAAGACATGGCACGGGACAACCGTTCGACGA
TGCTCCCAGATTTGCGGATTTCAACAGTGCAGGACCATCAAAGGTTAGAT
ATCGAGAAGATGGCACTGTTCATGGAATTCGCTTTGGGTTCTGGAGGGAA
ATCGGAAGAGCTCTTGGAAGAAGAAGATGA

Coding sequence (CDS) from alignment at tig00004370_pilon:2561510..2563189+

>Gchil9204.t1 ID=Gchil9204.t1|Name=Gchil9204.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1680bp|location=Sequence derived from alignment at tig00004370_pilon:2561510..2563189+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCCGCGAGAGGTCGAAACAACGCCGCCATTTGTTATATGATGATCC
TGTGGAATGTGGGATATTCTCAGCTTCAAAGAGCAGAAGAAGTCCAGACG
AGACGCGTACGGTGTCTGAGGTTCATCGCACTCCATTTCAAATTGCAACA
TACGGTATATTTGCTGGACATGGGGGTGTGGCGGCGGCCGAACTATGTGC
TCGCAACTTTGTCCCGACGCTACTAACAGATTCTGTGCTGAAGAGGGATT
CAGAAGCGGCGATTCGAAATGCATGCCAAGCGTTGGAGGCCTTCGTTTTG
GCAAAGTCAGCTCTTGATCGAGCATACTATGGAACAACTTTGCTGTTCAC
CATGATACGAGGCCAAGATCTCTACATTGCAAACGTGGGAAACTCACGTG
CGGTTCTTGCTACCAAAGACGGGGCTCAAGCCATCACACAGGAACACGAC
GGATCAAATGCCGAAGAGGTTTCTAGAGTAACCAATGCCGGAGGTTACTT
TGAGGATGGAAAGGTTAACAATCTGATCCCTATAACAAGGTCGATTGGTG
ATCTTGAGTTAAAAGACCGAAAGCACATTACTTTCCCGAACAGACGAATG
ACAGAGGATATCATAATCTCAGTGCCAGACATATACCAGCGAAAGCTATC
ATCCCGCGACGAATTCCTGGTCATGGCAACTGCCGAAGTGTGGGAAAATT
TGTCTAACAAAGTAGTAGTGCAGACTATTAGGGACTCTTTGCGACGCGGA
GACACTCCGAGAATGGCCTCCAAGAGAGTTGTGCATGCTGCTGCCTCCGC
AGGTGCCAAAAAGCATATTACGGTTATGATTCTTGTATTTCCTACTTCAA
CCAGAGGAGTTCATGACAAACCAGTGGCCCCAGTCAGTGGCAGGCGTGGT
TCGCGACCGAGTTCTCTGAAGAGGCATAGCTCAAACGCTGAACAGGAACT
GCTAGCCGTAAAAAATGCAACACAAGTTCCTGCTTTCGTCTTGGCGGCTC
AAGCACAAGAACAGAACCGCGCAGCCATTCAGACGGTAATACCGGAAACT
TCACCGATCACGTCGCCTTCTGGCCAGGCGTTACGAAGCCCGATCGGTGC
GACTGGGATCGAGCCCAAGAAAGAGGATCAATTCACATCAGCACCTTATC
TTTCCCTCAATAGGTCTGCTGGGTCAGGAAGCAGTCGTATTTCCTATCGG
CCAAGACGGGGCGAAGCGGATGGGTCTCCAGTGAAACAAGGTACATCGCG
ACACCGGTCACGGGGTGGATCCAACAGAACCCACACTGTTCTTGGGACAA
CTGCAGCCGGATCATACGGGCAAGTTGTCAAAGAACCGGTACCAAGAAGG
CATCGAGAAGTGACAAGGCCACCCCCTGTGGTGATCGAACATCGAGGGCA
AAGAGATCGAGAAAACGCCATGTCCCCTCGCGCAAAAACGGTGATGACAT
CAAGAATATCAGAGCTTACGGCCAGTGGAGCAACAATGGGTAGGGAATCG
TCGCATGGGTTTGAAGATCCAAGACATGGCACGGGACAACCGTTCGACGA
TGCTCCCAGATTTGCGGATTTCAACAGTGCAGGACCATCAAAGGTTAGAT
ATCGAGAAGATGGCACTGTTCATGGAATTCGCTTTGGGTTCTGGAGGGAA
ATCGGAAGAGCTCTTGGAAGAAGAAGATGA