Gchil9186.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9186.t1
Unique NameGchil9186.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2346995..2348017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9186Gchil9186Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2346995..2348017 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9186.t1.start1Gchil9186.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2346995..2346997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9186.t1.CDS1Gchil9186.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2346995..2348017 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9186.t1.exon1Gchil9186.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2346995..2348017 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9186.t1.stop1Gchil9186.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2348015..2348017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9186.t1Gchil9186.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2346995..2348017 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9186.t1 ID=Gchil9186.t1|Name=Gchil9186.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=341bp
MHSSAFALALALFAALAHGQRLQIYQASVPGPISGWSAGPVLPPKITLCA
NDLPSPFTVVCIPDEGMSASSAKFYLNSVVVRTERQLPYVITGDMSSKGA
FPWNNPPTVSEITCMLSGGQTVTSTILFSCDDDTETPTTDAPPTTMPPTT
MPAAPPAAAAPRSSGTSACVYIPATGYESKTGAWMEGGGGMEYKFSDSTT
KVDRAGLATMTYSFVAPLTARYGVTVDMLTSHGTEHNDIWLEVDGVPFTL
VKKGSSQDGKSGMNKAYHNNNGRSKLVYTVDFNAHVFSTKPALEAGASYV
VNIGGRSTKIRVYAIILFPCDAFGCAPGNQWNSAVNTCSA*
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spliced messenger RNA

>Gchil9186.t1 ID=Gchil9186.t1|Name=Gchil9186.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004370_pilon:2346995..2348017+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTCTTCCGCTTTTGCTCTGGCGCTCGCCCTGTTTGCCGCCCTGGC
GCACGGCCAGAGGTTGCAGATCTACCAGGCCTCTGTGCCGGGTCCAATCT
CCGGTTGGAGTGCCGGTCCCGTTCTGCCGCCAAAGATCACTCTCTGCGCC
AATGACCTCCCATCGCCTTTCACCGTTGTATGCATCCCCGACGAAGGCAT
GTCCGCCTCGTCCGCCAAGTTCTATCTCAACAGTGTCGTGGTCCGAACGG
AGAGACAGTTGCCATACGTCATCACCGGTGACATGTCCAGCAAGGGAGCC
TTCCCCTGGAACAACCCCCCCACCGTCAGCGAGATTACGTGCATGCTCAG
CGGTGGTCAGACTGTCACTTCCACCATCCTCTTCTCTTGTGATGATGACA
CTGAAACGCCTAccaccgacgccccgcccaccaccatgccgcccaccacc
atgccggccgctccaccagccgccgccgcgccccgcagcTCCGGAACATC
TGCTTGTGTGTACATCCCGGCCACTGGCTACGAATCAAAGACTGGCGCAT
GGATGGAAGGTGGCGGCGGCATGGAGTACAAGTTCAGTGACAGCACCACC
AAGGTCGATCGTGCAGGCTTGGCCACCATGACTTATTCGTTCGTGGCCCC
TCTCACCGCTCGCTACGGTGTCACAGTGGACATGCTCACCAGTCACGGAA
CTGAGCACAATGACATCTGGCTCGAGGTGGACGGCGTTCCATTCACGCTC
GTTAAGAAAGGCTCCTCACAGGATGGAAAGAGCGGTATGAACAAGGCCTA
TCACAACAACAACGGACGCTCCAAACTTGTCTACACTGTGGACTTTAATG
CTCATGTGTTCTCCACCAAGCCTGCTTTGGAGGCCGGCGCCTCGTACGTT
GTCAACATTGGTGGCCGCAGCACCAAGATCAGAGTGTACGCAATCATTCT
GTTCCCTTGTGATGCCTTCGGATGCGCTCCAGGCAACCAGTGGAACAGCG
CCGTTAACACGTGTTCAGCCTAA
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protein sequence of Gchil9186.t1

>Gchil9186.t1 ID=Gchil9186.t1|Name=Gchil9186.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=341bp
MHSSAFALALALFAALAHGQRLQIYQASVPGPISGWSAGPVLPPKITLCA
NDLPSPFTVVCIPDEGMSASSAKFYLNSVVVRTERQLPYVITGDMSSKGA
FPWNNPPTVSEITCMLSGGQTVTSTILFSCDDDTETPTTDAPPTTMPPTT
MPAAPPAAAAPRSSGTSACVYIPATGYESKTGAWMEGGGGMEYKFSDSTT
KVDRAGLATMTYSFVAPLTARYGVTVDMLTSHGTEHNDIWLEVDGVPFTL
VKKGSSQDGKSGMNKAYHNNNGRSKLVYTVDFNAHVFSTKPALEAGASYV
VNIGGRSTKIRVYAIILFPCDAFGCAPGNQWNSAVNTCSA*
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mRNA from alignment at tig00004370_pilon:2346995..2348017+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9186.t1 ID=Gchil9186.t1|Name=Gchil9186.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00004370_pilon:2346995..2348017+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATTCTTCCGCTTTTGCTCTGGCGCTCGCCCTGTTTGCCGCCCTGGC
GCACGGCCAGAGGTTGCAGATCTACCAGGCCTCTGTGCCGGGTCCAATCT
CCGGTTGGAGTGCCGGTCCCGTTCTGCCGCCAAAGATCACTCTCTGCGCC
AATGACCTCCCATCGCCTTTCACCGTTGTATGCATCCCCGACGAAGGCAT
GTCCGCCTCGTCCGCCAAGTTCTATCTCAACAGTGTCGTGGTCCGAACGG
AGAGACAGTTGCCATACGTCATCACCGGTGACATGTCCAGCAAGGGAGCC
TTCCCCTGGAACAACCCCCCCACCGTCAGCGAGATTACGTGCATGCTCAG
CGGTGGTCAGACTGTCACTTCCACCATCCTCTTCTCTTGTGATGATGACA
CTGAAACGCCTAccaccgacgccccgcccaccaccatgccgcccaccacc
atgccggccgctccaccagccgccgccgcgccccgcagcTCCGGAACATC
TGCTTGTGTGTACATCCCGGCCACTGGCTACGAATCAAAGACTGGCGCAT
GGATGGAAGGTGGCGGCGGCATGGAGTACAAGTTCAGTGACAGCACCACC
AAGGTCGATCGTGCAGGCTTGGCCACCATGACTTATTCGTTCGTGGCCCC
TCTCACCGCTCGCTACGGTGTCACAGTGGACATGCTCACCAGTCACGGAA
CTGAGCACAATGACATCTGGCTCGAGGTGGACGGCGTTCCATTCACGCTC
GTTAAGAAAGGCTCCTCACAGGATGGAAAGAGCGGTATGAACAAGGCCTA
TCACAACAACAACGGACGCTCCAAACTTGTCTACACTGTGGACTTTAATG
CTCATGTGTTCTCCACCAAGCCTGCTTTGGAGGCCGGCGCCTCGTACGTT
GTCAACATTGGTGGCCGCAGCACCAAGATCAGAGTGTACGCAATCATTCT
GTTCCCTTGTGATGCCTTCGGATGCGCTCCAGGCAACCAGTGGAACAGCG
CCGTTAACACGTGTTCAGCCTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:2346995..2348017+

>Gchil9186.t1 ID=Gchil9186.t1|Name=Gchil9186.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00004370_pilon:2346995..2348017+ (Gracilaria chilensis NLEC103_M9 male)
ATGCATTCTTCCGCTTTTGCTCTGGCGCTCGCCCTGTTTGCCGCCCTGGC
GCACGGCCAGAGGTTGCAGATCTACCAGGCCTCTGTGCCGGGTCCAATCT
CCGGTTGGAGTGCCGGTCCCGTTCTGCCGCCAAAGATCACTCTCTGCGCC
AATGACCTCCCATCGCCTTTCACCGTTGTATGCATCCCCGACGAAGGCAT
GTCCGCCTCGTCCGCCAAGTTCTATCTCAACAGTGTCGTGGTCCGAACGG
AGAGACAGTTGCCATACGTCATCACCGGTGACATGTCCAGCAAGGGAGCC
TTCCCCTGGAACAACCCCCCCACCGTCAGCGAGATTACGTGCATGCTCAG
CGGTGGTCAGACTGTCACTTCCACCATCCTCTTCTCTTGTGATGATGACA
CTGAAACGCCTAccaccgacgccccgcccaccaccatgccgcccaccacc
atgccggccgctccaccagccgccgccgcgccccgcagcTCCGGAACATC
TGCTTGTGTGTACATCCCGGCCACTGGCTACGAATCAAAGACTGGCGCAT
GGATGGAAGGTGGCGGCGGCATGGAGTACAAGTTCAGTGACAGCACCACC
AAGGTCGATCGTGCAGGCTTGGCCACCATGACTTATTCGTTCGTGGCCCC
TCTCACCGCTCGCTACGGTGTCACAGTGGACATGCTCACCAGTCACGGAA
CTGAGCACAATGACATCTGGCTCGAGGTGGACGGCGTTCCATTCACGCTC
GTTAAGAAAGGCTCCTCACAGGATGGAAAGAGCGGTATGAACAAGGCCTA
TCACAACAACAACGGACGCTCCAAACTTGTCTACACTGTGGACTTTAATG
CTCATGTGTTCTCCACCAAGCCTGCTTTGGAGGCCGGCGCCTCGTACGTT
GTCAACATTGGTGGCCGCAGCACCAAGATCAGAGTGTACGCAATCATTCT
GTTCCCTTGTGATGCCTTCGGATGCGCTCCAGGCAACCAGTGGAACAGCG
CCGTTAACACGTGTTCAGCCTAA
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