Gchil9162.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9162.t1
Unique NameGchil9162.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length415
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2137327..2138690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9162Gchil9162Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2137327..2138690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9162.t1Gchil9162.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2137327..2138690 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9162.t1.stop1Gchil9162.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2137327..2137329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9162.t1.CDS1Gchil9162.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2137327..2137910 -
Gchil9162.t1.CDS2Gchil9162.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2138030..2138690 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9162.t1.exon1Gchil9162.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2137327..2137910 -
Gchil9162.t1.exon2Gchil9162.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2138030..2138690 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9162.t1.intron1Gchil9162.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 2137911..2138029 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9162.t1.start1Gchil9162.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2138688..2138690 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9162.t1 ID=Gchil9162.t1|Name=Gchil9162.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=415bp
MHPRLNGISFRIHAMTSSSTSSCVWAGPKATCSFNQLHDFAASFAKRGYR
FALSGAFLDTPERRCRLQPSAPQLDSAMMIFGPNILAPAKSAFEQLTRPF
RSGTWIALSVVTFFFAVIGMVIAVIVANRLSHTVYILMGHRDKLQDYNSR
RLASSLAFLRGAMSSFAAICYFFYSASVVNFLFAQSHVDMSHTLSSLRVS
DLSHYAVLKDSALEQVWVDAVNPSGYKFNSSDPSSFPWKRCLSGKECMEW
AFRGTHDVQFAVTYKMLGNHFVHVLTDCNVLTEWPSRQPLPSFNIGWLYN
REVTDTERMAINREIVGLRINGTISNLISRTKGDASCSEETAHAIGILVV
LIPLAVLVFPLGIVGLSLIAWAEFERLKCEKRHIMETERDQVLPSAIGGT
PHDSNLTRAVEQAT*
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spliced messenger RNA

>Gchil9162.t1 ID=Gchil9162.t1|Name=Gchil9162.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at tig00004370_pilon:2137327..2138690- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCTCGGCTGAATGGTATATCTTTTCGAATTCATGCCATGACTTC
CTCTTCTACTTCGTCCTGTGTATGGGCGGGACCAAAGGCCACTTGTTCTT
TTAATCAACTCCATGATTTCGCCGCGTCTTTTGCAAAGCGCGGGTATCGT
TTTGCGCTCTCTGGCGCTTTTTTGGATACCCCAGAGAGGCGCTGTCGTCT
TCAGCCGTCTGCACCACAACTTGATTCCGCCATGATGATCTTCGGTCCGA
ACATCCTTGCACCTGCGAAAAGTGCGTTTGAACAGCTTACCAGACCGTTC
CGAAGTGGTACTTGGATCGCGCTTTCCGTCGTAACCTTTTTTTTTGCTGT
TATTGGTATGGTAATTGCGGTCATTGTGGCGAACAGGCTTTCGCACACTG
TGTACATATTGATGGGACATAGAGACAAATTGCAAGATTATAATTCTAGA
CGTCTTGCGTCATCGCTTGCTTTTCTTCGCGGAGCTATGTCTAGTTTTGC
AGCAATATGTTATTTTTTCTACTCTGCTTCTGTTGTTAACTTTCTTTTTG
CACAAAGCCATGTGGATATGTCTCACACCTTATCCAGCTTACGTGTTTCT
GATTTGTCTCACTACGCCGTGCTGAAAGACTCTGCTCTAGAACAAGTATG
GGTTGATGCTGTGAATCCATCAGGATACAAGTTCAATAGCTCTGATCCTT
CTAGTTTTCCGTGGAAACGTTGCCTATCCGGCAAAGAATGCATGGAGTGG
GCGTTCAGGGGTACGCATGATGTCCAATTTGCCGTGACATACAAGATGTT
GGGAAATCACTTTGTTCATGTGTTAACTGATTGCAATGTCCTCACGGAAT
GGCCATCACGACAACCGTTGCCTTCCTTTAATATTGGTTGGCTATACAAC
CGCGAGGTGACCGACACCGAGCGCATGGCTATTAATCGAGAAATCGTCGG
ACTGCGAATTAACGGCACCATATCAAACTTGATCTCTCGAACCAAGGGCG
ATGCGTCCTGCAGTGAAGAAACTGCGCATGCCATTGGGATTTTAGTAGTT
CTCATTCCGCTGGCTGTGTTAGTGTTTCCTTTGGGTATCGTTGGACTTTC
CCTAATTGCATGGGCAGAGTTTGAGCGACTCAAGTGTGAGAAAAGGCATA
TCATGGAGACTGAACGTGATCAGGTATTACCGTCTGCAATTGGTGGCACC
CCGCACGACTCAAACTTAACCCGTGCAGTTGAACAGGCGACATAG
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protein sequence of Gchil9162.t1

>Gchil9162.t1 ID=Gchil9162.t1|Name=Gchil9162.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=415bp
MHPRLNGISFRIHAMTSSSTSSCVWAGPKATCSFNQLHDFAASFAKRGYR
FALSGAFLDTPERRCRLQPSAPQLDSAMMIFGPNILAPAKSAFEQLTRPF
RSGTWIALSVVTFFFAVIGMVIAVIVANRLSHTVYILMGHRDKLQDYNSR
RLASSLAFLRGAMSSFAAICYFFYSASVVNFLFAQSHVDMSHTLSSLRVS
DLSHYAVLKDSALEQVWVDAVNPSGYKFNSSDPSSFPWKRCLSGKECMEW
AFRGTHDVQFAVTYKMLGNHFVHVLTDCNVLTEWPSRQPLPSFNIGWLYN
REVTDTERMAINREIVGLRINGTISNLISRTKGDASCSEETAHAIGILVV
LIPLAVLVFPLGIVGLSLIAWAEFERLKCEKRHIMETERDQVLPSAIGGT
PHDSNLTRAVEQAT*
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mRNA from alignment at tig00004370_pilon:2137327..2138690-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9162.t1 ID=Gchil9162.t1|Name=Gchil9162.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1364bp|location=Sequence derived from alignment at tig00004370_pilon:2137327..2138690- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCCTCGGCTGAATGGTATATCTTTTCGAATTCATGCCATGACTTC
CTCTTCTACTTCGTCCTGTGTATGGGCGGGACCAAAGGCCACTTGTTCTT
TTAATCAACTCCATGATTTCGCCGCGTCTTTTGCAAAGCGCGGGTATCGT
TTTGCGCTCTCTGGCGCTTTTTTGGATACCCCAGAGAGGCGCTGTCGTCT
TCAGCCGTCTGCACCACAACTTGATTCCGCCATGATGATCTTCGGTCCGA
ACATCCTTGCACCTGCGAAAAGTGCGTTTGAACAGCTTACCAGACCGTTC
CGAAGTGGTACTTGGATCGCGCTTTCCGTCGTAACCTTTTTTTTTGCTGT
TATTGGTATGGTAATTGCGGTCATTGTGGCGAACAGGCTTTCGCACACTG
TGTACATATTGATGGGACATAGAGACAAATTGCAAGATTATAATTCTAGA
CGTCTTGCGTCATCGCTTGCTTTTCTTCGCGGAGCTATGTCTAGTTTTGC
AGCAATATGTTATTTTTTCTACTCTGCTTCTGTTGTTAACTTTCTTTTTG
CACAAAGCCATGTGGATATGTCTCACACCTTATCCAGCTTACGTGTTTCT
GATTTGTCTCACTACGCCGTGCTGAAAGACTCTGCTCTAGAACAAGTATG
GGTTGATGCTGGTATGTTTCTCATGGTCCTGCCCATTTTCTCGTGAATAC
GTGTATTCTGTTCGAACTTGACATCGCAGAAACAGTTCTAACGTCGTCAT
GTTCCACATTTTTTCTCATATCCCTCTCAGTGAATCCATCAGGATACAAG
TTCAATAGCTCTGATCCTTCTAGTTTTCCGTGGAAACGTTGCCTATCCGG
CAAAGAATGCATGGAGTGGGCGTTCAGGGGTACGCATGATGTCCAATTTG
CCGTGACATACAAGATGTTGGGAAATCACTTTGTTCATGTGTTAACTGAT
TGCAATGTCCTCACGGAATGGCCATCACGACAACCGTTGCCTTCCTTTAA
TATTGGTTGGCTATACAACCGCGAGGTGACCGACACCGAGCGCATGGCTA
TTAATCGAGAAATCGTCGGACTGCGAATTAACGGCACCATATCAAACTTG
ATCTCTCGAACCAAGGGCGATGCGTCCTGCAGTGAAGAAACTGCGCATGC
CATTGGGATTTTAGTAGTTCTCATTCCGCTGGCTGTGTTAGTGTTTCCTT
TGGGTATCGTTGGACTTTCCCTAATTGCATGGGCAGAGTTTGAGCGACTC
AAGTGTGAGAAAAGGCATATCATGGAGACTGAACGTGATCAGGTATTACC
GTCTGCAATTGGTGGCACCCCGCACGACTCAAACTTAACCCGTGCAGTTG
AACAGGCGACATAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:2137327..2138690-

>Gchil9162.t1 ID=Gchil9162.t1|Name=Gchil9162.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1245bp|location=Sequence derived from alignment at tig00004370_pilon:2137327..2138690- (Gracilaria chilensis NLEC103_M9 male)
ATGCATCCTCGGCTGAATGGTATATCTTTTCGAATTCATGCCATGACTTC
CTCTTCTACTTCGTCCTGTGTATGGGCGGGACCAAAGGCCACTTGTTCTT
TTAATCAACTCCATGATTTCGCCGCGTCTTTTGCAAAGCGCGGGTATCGT
TTTGCGCTCTCTGGCGCTTTTTTGGATACCCCAGAGAGGCGCTGTCGTCT
TCAGCCGTCTGCACCACAACTTGATTCCGCCATGATGATCTTCGGTCCGA
ACATCCTTGCACCTGCGAAAAGTGCGTTTGAACAGCTTACCAGACCGTTC
CGAAGTGGTACTTGGATCGCGCTTTCCGTCGTAACCTTTTTTTTTGCTGT
TATTGGTATGGTAATTGCGGTCATTGTGGCGAACAGGCTTTCGCACACTG
TGTACATATTGATGGGACATAGAGACAAATTGCAAGATTATAATTCTAGA
CGTCTTGCGTCATCGCTTGCTTTTCTTCGCGGAGCTATGTCTAGTTTTGC
AGCAATATGTTATTTTTTCTACTCTGCTTCTGTTGTTAACTTTCTTTTTG
CACAAAGCCATGTGGATATGTCTCACACCTTATCCAGCTTACGTGTTTCT
GATTTGTCTCACTACGCCGTGCTGAAAGACTCTGCTCTAGAACAAGTATG
GGTTGATGCTGTGAATCCATCAGGATACAAGTTCAATAGCTCTGATCCTT
CTAGTTTTCCGTGGAAACGTTGCCTATCCGGCAAAGAATGCATGGAGTGG
GCGTTCAGGGGTACGCATGATGTCCAATTTGCCGTGACATACAAGATGTT
GGGAAATCACTTTGTTCATGTGTTAACTGATTGCAATGTCCTCACGGAAT
GGCCATCACGACAACCGTTGCCTTCCTTTAATATTGGTTGGCTATACAAC
CGCGAGGTGACCGACACCGAGCGCATGGCTATTAATCGAGAAATCGTCGG
ACTGCGAATTAACGGCACCATATCAAACTTGATCTCTCGAACCAAGGGCG
ATGCGTCCTGCAGTGAAGAAACTGCGCATGCCATTGGGATTTTAGTAGTT
CTCATTCCGCTGGCTGTGTTAGTGTTTCCTTTGGGTATCGTTGGACTTTC
CCTAATTGCATGGGCAGAGTTTGAGCGACTCAAGTGTGAGAAAAGGCATA
TCATGGAGACTGAACGTGATCAGGTATTACCGTCTGCAATTGGTGGCACC
CCGCACGACTCAAACTTAACCCGTGCAGTTGAACAGGCGACATAG
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