Gchil916.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil916.t1
Unique NameGchil916.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:1385217..1386984 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil916Gchil916Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 1385217..1386984 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil916.t1Gchil916.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 1385217..1386984 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil916.t1.stop1Gchil916.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 1385217..1385219 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil916.t1.CDS1Gchil916.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1385217..1385754 -
Gchil916.t1.CDS2Gchil916.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1385868..1386008 -
Gchil916.t1.CDS3Gchil916.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1386100..1386229 -
Gchil916.t1.CDS4Gchil916.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1386316..1386844 -
Gchil916.t1.CDS5Gchil916.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 1386937..1386984 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil916.t1.exon1Gchil916.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1385217..1385754 -
Gchil916.t1.exon2Gchil916.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1385868..1386008 -
Gchil916.t1.exon3Gchil916.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1386100..1386229 -
Gchil916.t1.exon4Gchil916.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1386316..1386844 -
Gchil916.t1.exon5Gchil916.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 1386937..1386984 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil916.t1.intron1Gchil916.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 1385755..1385867 -
Gchil916.t1.intron2Gchil916.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 1386009..1386099 -
Gchil916.t1.intron3Gchil916.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 1386230..1386315 -
Gchil916.t1.intron4Gchil916.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00000017_pilon 1386845..1386936 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil916.t1.start1Gchil916.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 1386982..1386984 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil916.t1 ID=Gchil916.t1|Name=Gchil916.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=462bp
MQEKPISFKNEQVFANNGIDGVIADHVLQMKSYLNWSCSTTVLFKETGSS
DFNAFVDNLYKCTNKSTGQIIDSPECFCDIGLGGWFQTPGRFPKVDFLPP
IVFDSYIVFAHISSATVSGKMWFFLLTFDAMAWVCIVALVFMFAFLKTLD
SRFSVAPLYSPLPNTCSKFQRYSHFFMKSPLLYRCRKAFQSALTRMLLLS
DDRVVENGNATRQWLLNLFISVCALFLILSYEASMTASLVQESFSSQYQS
VSDFQSCRVKPSDICIIKGGALETFWNNSIAINACHENEKPQFKNSYPEL
FQAVQDSRCIYGITMESILNNAIRETYCGTFVSLGEALSTGGLSMLLPKH
SNLTEPMSLGVLDLLQNQTKTYLNKYFNTLPHCRADVNTNLSFNKLRLFF
FLAFGFGLVIFLEMLFGPQQLSSKQDSKVSCLKENQVTQTKNDSIDRNRS
PSLSTASQDTN*
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spliced messenger RNA

>Gchil916.t1 ID=Gchil916.t1|Name=Gchil916.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at tig00000017_pilon:1385217..1386984- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGAAAAGCCTATTAGTTTCAAAAACGAACAAGTTTTCGCCAATAA
TGGTATAGATGGTGTCATAGCGGACCATGTGCTCCAGATGAAGTCCTACC
TGAACTGGAGCTGCTCAACGACGGTTCTCTTCAAGGAGACCGGTTCTTCT
GACTTCAATGCTTTTGTTGACAATTTATACAAATGTACAAACAAAAGCAC
TGGTCAAATCATTGACTCCCCTGAGTGCTTTTGCGACATAGGACTTGGAG
GCTGGTTTCAAACCCCAGGTCGCTTCCCGAAAGTGGACTTTTTACCCCCA
ATTGTGTTCGATAGCTACATTGTCTTTGCCCATATTTCTTCAGCCACAGT
GTCTGGCAAAATGTGGTTTTTTCTCCTCACATTTGACGCAATGGCTTGGG
TCTGTATAGTTGCTTTGGTTTTTATGTTTGCCTTCTTGAAGACCCTTGAT
TCTCGTTTCTCTGTAGCCCCATTGTACTCGCCGCTTCCAAACACCTGCAG
CAAATTTCAAAGATATTCGCACTTTTTCATGAAGAGTCCTCTACTCTACC
GCTGTAGGAAGGCTTTTCAAAGCGCATTGACAAGGATGCTGTTGCTCTCC
GACGATCGGGTGGTGGAAAATGGAAACGCAACGCGACAATGGCTCCTTAA
TCTCTTCATTTCTGTGTGTGCTCTGTTTCTTATACTTTCTTACGAGGCCA
GTATGACAGCTTCGTTAGTGCAAGAATCCTTCTCATCTCAATATCAATCT
GTCTCAGATTTTCAGTCTTGTCGCGTTAAACCGTCGGATATTTGCATTAT
CAAAGGTGGGGCATTAGAAACGTTTTGGAATAACTCGATTGCCATTAATG
CCTGCCACGAAAACGAAAAACCCCAGTTCAAGAATTCATACCCAGAACTG
TTTCAAGCGGTGCAGGATTCTCGTTGTATCTACGGTATCACAATGGAATC
TATATTGAACAATGCCATTCGAGAAACATACTGTGGTACCTTTGTGAGTC
TTGGCGAAGCACTTTCGACAGGGGGACTCTCAATGCTCCTTCCAAAGCAT
TCGAATTTGACTGAGCCAATGAGTCTTGGGGTGCTCGACCTGCTTCAGAA
TCAAACGAAAACATATCTGAACAAGTATTTCAACACATTGCCGCACTGCA
GGGCCGATGTGAACACGAATCTAAGCTTCAACAAACTTCGGCTATTCTTT
TTCTTAGCTTTTGGTTTCGGGCTCGTTATCTTCTTGGAAATGCTCTTTGG
TCCCCAGCAACTCTCTTCAAAACAGGATAGCAAAGTGAGCTGTCTGAAAG
AAAATCAAGTGACTCAGACCAAGAACGATTCAATAGATCGAAATCGCAGC
CCTTCTTTATCCACAGCATCACAGGACACAAATTAG
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protein sequence of Gchil916.t1

>Gchil916.t1 ID=Gchil916.t1|Name=Gchil916.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=462bp
MQEKPISFKNEQVFANNGIDGVIADHVLQMKSYLNWSCSTTVLFKETGSS
DFNAFVDNLYKCTNKSTGQIIDSPECFCDIGLGGWFQTPGRFPKVDFLPP
IVFDSYIVFAHISSATVSGKMWFFLLTFDAMAWVCIVALVFMFAFLKTLD
SRFSVAPLYSPLPNTCSKFQRYSHFFMKSPLLYRCRKAFQSALTRMLLLS
DDRVVENGNATRQWLLNLFISVCALFLILSYEASMTASLVQESFSSQYQS
VSDFQSCRVKPSDICIIKGGALETFWNNSIAINACHENEKPQFKNSYPEL
FQAVQDSRCIYGITMESILNNAIRETYCGTFVSLGEALSTGGLSMLLPKH
SNLTEPMSLGVLDLLQNQTKTYLNKYFNTLPHCRADVNTNLSFNKLRLFF
FLAFGFGLVIFLEMLFGPQQLSSKQDSKVSCLKENQVTQTKNDSIDRNRS
PSLSTASQDTN*
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mRNA from alignment at tig00000017_pilon:1385217..1386984-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil916.t1 ID=Gchil916.t1|Name=Gchil916.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1768bp|location=Sequence derived from alignment at tig00000017_pilon:1385217..1386984- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGAAAAGCCTATTAGTTTCAAAAACGAACAAGTTTTCGCCAATGT
ATGACTTGTTAACCAACCTAAGGCAATGCCCAATACCCCCGCGCACATTT
CTAACTCCTCAAATTGGCTTTCATTTTTCTTTCTCTTCAGAATGGTATAG
ATGGTGTCATAGCGGACCATGTGCTCCAGATGAAGTCCTACCTGAACTGG
AGCTGCTCAACGACGGTTCTCTTCAAGGAGACCGGTTCTTCTGACTTCAA
TGCTTTTGTTGACAATTTATACAAATGTACAAACAAAAGCACTGGTCAAA
TCATTGACTCCCCTGAGTGCTTTTGCGACATAGGACTTGGAGGCTGGTTT
CAAACCCCAGGTCGCTTCCCGAAAGTGGACTTTTTACCCCCAATTGTGTT
CGATAGCTACATTGTCTTTGCCCATATTTCTTCAGCCACAGTGTCTGGCA
AAATGTGGTTTTTTCTCCTCACATTTGACGCAATGGCTTGGGTCTGTATA
GTTGCTTTGGTTTTTATGTTTGCCTTCTTGAAGACCCTTGATTCTCGTTT
CTCTGTAGCCCCATTGTACTCGCCGCTTCCAAACACCTGCAGCAAATTTC
AAAGATATTCGCACTTTTTCATGAAGAGTCCTCTACTCTACCGCTGTAGG
AAGGCTTTTCAAAGCGCATGTACGGTGCAAATTGTTTCATTTCCATTCTC
GCATGCGCTATACTTCTTCTAACATTTTCAAAAATCTTTAAAATGACATA
TGCAGTGACAAGGATGCTGTTGCTCTCCGACGATCGGGTGGTGGAAAATG
GAAACGCAACGCGACAATGGCTCCTTAATCTCTTCATTTCTGTGTGTGCT
CTGTTTCTTATACTTTCTTACGAGGCCAGTATGACGTATGTACTTTTCTT
CCTTTCTCTGTCCTTCTATCATCATGACGATTTGTCGTATTATTTTTCTG
ACATGGTGGTCGTCGTCATTTCTTAGAGCTTCGTTAGTGCAAGAATCCTT
CTCATCTCAATATCAATCTGTCTCAGATTTTCAGTCTTGTCGCGTTAAAC
CGTCGGATATTTGCATTATCAAAGGTGGGGCATTAGAAACGTTTTGGAAT
AACTCGATTGCCATTAAGTAAGTTTGTTTTTGAAATTTTACCTTTCCTCG
GTAGCTCTTCCTTCGCTCCGAAAGATTTTATTTTTATACGAGTGATATCT
AACGTATTTGTATGGCTTTATTTCTCAAAGTGCCTGCCACGAAAACGAAA
AACCCCAGTTCAAGAATTCATACCCAGAACTGTTTCAAGCGGTGCAGGAT
TCTCGTTGTATCTACGGTATCACAATGGAATCTATATTGAACAATGCCAT
TCGAGAAACATACTGTGGTACCTTTGTGAGTCTTGGCGAAGCACTTTCGA
CAGGGGGACTCTCAATGCTCCTTCCAAAGCATTCGAATTTGACTGAGCCA
ATGAGTCTTGGGGTGCTCGACCTGCTTCAGAATCAAACGAAAACATATCT
GAACAAGTATTTCAACACATTGCCGCACTGCAGGGCCGATGTGAACACGA
ATCTAAGCTTCAACAAACTTCGGCTATTCTTTTTCTTAGCTTTTGGTTTC
GGGCTCGTTATCTTCTTGGAAATGCTCTTTGGTCCCCAGCAACTCTCTTC
AAAACAGGATAGCAAAGTGAGCTGTCTGAAAGAAAATCAAGTGACTCAGA
CCAAGAACGATTCAATAGATCGAAATCGCAGCCCTTCTTTATCCACAGCA
TCACAGGACACAAATTAG
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Coding sequence (CDS) from alignment at tig00000017_pilon:1385217..1386984-

>Gchil916.t1 ID=Gchil916.t1|Name=Gchil916.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1386bp|location=Sequence derived from alignment at tig00000017_pilon:1385217..1386984- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAGAAAAGCCTATTAGTTTCAAAAACGAACAAGTTTTCGCCAATAA
TGGTATAGATGGTGTCATAGCGGACCATGTGCTCCAGATGAAGTCCTACC
TGAACTGGAGCTGCTCAACGACGGTTCTCTTCAAGGAGACCGGTTCTTCT
GACTTCAATGCTTTTGTTGACAATTTATACAAATGTACAAACAAAAGCAC
TGGTCAAATCATTGACTCCCCTGAGTGCTTTTGCGACATAGGACTTGGAG
GCTGGTTTCAAACCCCAGGTCGCTTCCCGAAAGTGGACTTTTTACCCCCA
ATTGTGTTCGATAGCTACATTGTCTTTGCCCATATTTCTTCAGCCACAGT
GTCTGGCAAAATGTGGTTTTTTCTCCTCACATTTGACGCAATGGCTTGGG
TCTGTATAGTTGCTTTGGTTTTTATGTTTGCCTTCTTGAAGACCCTTGAT
TCTCGTTTCTCTGTAGCCCCATTGTACTCGCCGCTTCCAAACACCTGCAG
CAAATTTCAAAGATATTCGCACTTTTTCATGAAGAGTCCTCTACTCTACC
GCTGTAGGAAGGCTTTTCAAAGCGCATTGACAAGGATGCTGTTGCTCTCC
GACGATCGGGTGGTGGAAAATGGAAACGCAACGCGACAATGGCTCCTTAA
TCTCTTCATTTCTGTGTGTGCTCTGTTTCTTATACTTTCTTACGAGGCCA
GTATGACAGCTTCGTTAGTGCAAGAATCCTTCTCATCTCAATATCAATCT
GTCTCAGATTTTCAGTCTTGTCGCGTTAAACCGTCGGATATTTGCATTAT
CAAAGGTGGGGCATTAGAAACGTTTTGGAATAACTCGATTGCCATTAATG
CCTGCCACGAAAACGAAAAACCCCAGTTCAAGAATTCATACCCAGAACTG
TTTCAAGCGGTGCAGGATTCTCGTTGTATCTACGGTATCACAATGGAATC
TATATTGAACAATGCCATTCGAGAAACATACTGTGGTACCTTTGTGAGTC
TTGGCGAAGCACTTTCGACAGGGGGACTCTCAATGCTCCTTCCAAAGCAT
TCGAATTTGACTGAGCCAATGAGTCTTGGGGTGCTCGACCTGCTTCAGAA
TCAAACGAAAACATATCTGAACAAGTATTTCAACACATTGCCGCACTGCA
GGGCCGATGTGAACACGAATCTAAGCTTCAACAAACTTCGGCTATTCTTT
TTCTTAGCTTTTGGTTTCGGGCTCGTTATCTTCTTGGAAATGCTCTTTGG
TCCCCAGCAACTCTCTTCAAAACAGGATAGCAAAGTGAGCTGTCTGAAAG
AAAATCAAGTGACTCAGACCAAGAACGATTCAATAGATCGAAATCGCAGC
CCTTCTTTATCCACAGCATCACAGGACACAAATTAG
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