Gchil9152.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9152.t1
Unique NameGchil9152.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length352
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:2084040..2085095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7029.ACYPI010215-PA
Preferred nameMGAT4B
PFAMsGlyco_transf_54
Max annot lvl33208|Metazoa
KEGG koko:K00738
KEGG ReactionR05987
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00075
GOsGO:0000139,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005794,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0008454,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0031090,GO:0031974,GO:0031984,GO:0034645,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043413,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue5.76e-05
EggNOG OGs28HC5@1|root,2QPQJ@2759|Eukaryota,38B8P@33154|Opisthokonta,3B9C9@33208|Metazoa,3CRMG@33213|Bilateria,41XYQ@6656|Arthropoda,3SIW5@50557|Insecta,3E7BW@33342|Paraneoptera
EC2.4.1.145
DescriptionN-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region
COG categoryG
CAZyGT54
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9152Gchil9152Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 2084040..2085095 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9152.t1.stop1Gchil9152.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 2084040..2084042 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9152.t1.CDS1Gchil9152.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 2084040..2085095 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9152.t1.exon1Gchil9152.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 2084040..2085095 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9152.t1.start1Gchil9152.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 2085093..2085095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9152.t1Gchil9152.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 2084040..2085095 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9152.t1 ID=Gchil9152.t1|Name=Gchil9152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=352bp
MVSTVRRRALATSSNSDFCPSIASPSHKSFPISSRAICILSILLTASLFS
IHQIIRYNRSDPITIKLLAPNATSDDEESLSFSRIQADDYVHPNFRARGA
ACMPSVTRIKGGIPVEYVSNAVKSWRLATNQSLDVRQLTVFDMDLQPAAR
PSWLDNVFDTALTDLPSWLKLSKRERPPIPHRKVTLGDDERRVEWRSKEA
LDYADVLLRCMEENDVEYIIVVQDDVLFREQMKNVIQWCDKHLKESFVTN
AQGRPKQIRMCSASLFDLSGGEADAHELRSSNMVARVWRRDFVQSMARYL
TTNFDEAPVDWLADRRCRTQKRKTIVMEPNPVRHRGRISSFPSNLREKTI
T*
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spliced messenger RNA

>Gchil9152.t1 ID=Gchil9152.t1|Name=Gchil9152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004370_pilon:2084040..2085095- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCCACTGTTCGTCGCAGAGCTCTCGCAACATCGTCGAACTCAGA
CTTTTGTCCATCTATTGCCTCCCCTTCCCACAAATCGTTTCCCATCTCAT
CTCGAGCAATATGCATCCTCTCCATCCTACTCACGGCGTCCCTGTTCTCT
ATACATCAGATCATTCGATACAACCGATCTGATCCAATTACTATTAAATT
ACTTGCACCCAACGCAACATCCGACGATGAGGAATCCTTATCATTCTCCA
GAATCCAGGCAGATGATTATGTTCATCCAAACTTCCGCGCTCGCGGAGCG
GCATGTATGCCGAGCGTTACTCGAATAAAAGGTGGAATACCCGTTGAATA
TGTCAGCAACGCTGTCAAGTCCTGGCGACTGGCAACGAACCAAAGCTTAG
ATGTGAGACAGCTCACGGTCTTTGACATGGATCTTCAACCAGCTGCACGC
CCCTCTTGGCTGGATAACGTGTTTGACACTGCTCTTACTGACCTTCCCAG
CTGGCTCAAGCTTAGTAAGAGAGAACGTCCACCTATTCCCCATAGAAAGG
TCACCCTAGGTGATGATGAGCGGCGTGTTGAATGGAGAAGTAAAGAAGCT
CTGGATTACGCAGACGTTCTTCTGCGTTGCATGGAGGAAAACGATGTTGA
GTACATAATTGTTGTTCAGGATGATGTTCTATTTCGCGAGCAGATGAAAA
ATGTCATTCAGTGGTGCGACAAACACTTGAAAGAATCGTTTGTTACCAAT
GCACAAGGGAGACCAAAGCAAATTCGAATGTGCAGTGCATCACTGTTTGA
TCTCTCTGGTGGTGAAGCGGATGCCCATGAGCTTCGTTCGTCTAACATGG
TTGCTCGGGTGTGGAGAAGGGACTTCGTGCAAAGCATGGCGCGTTATTTG
ACAACTAATTTTGATGAGGCACCAGTTGACTGGCTTGCAGATCGTAGATG
CAGAACTCAGAAGAGAAAAACTATTGTAATGGAACCTAATCCTGTGAGAC
ATCGCGGCCGTATCTCATCTTTCCCTTCCAATTTAAGAGAAAAAACCATA
ACATGA
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protein sequence of Gchil9152.t1

>Gchil9152.t1 ID=Gchil9152.t1|Name=Gchil9152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=352bp
MVSTVRRRALATSSNSDFCPSIASPSHKSFPISSRAICILSILLTASLFS
IHQIIRYNRSDPITIKLLAPNATSDDEESLSFSRIQADDYVHPNFRARGA
ACMPSVTRIKGGIPVEYVSNAVKSWRLATNQSLDVRQLTVFDMDLQPAAR
PSWLDNVFDTALTDLPSWLKLSKRERPPIPHRKVTLGDDERRVEWRSKEA
LDYADVLLRCMEENDVEYIIVVQDDVLFREQMKNVIQWCDKHLKESFVTN
AQGRPKQIRMCSASLFDLSGGEADAHELRSSNMVARVWRRDFVQSMARYL
TTNFDEAPVDWLADRRCRTQKRKTIVMEPNPVRHRGRISSFPSNLREKTI
T*
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mRNA from alignment at tig00004370_pilon:2084040..2085095-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9152.t1 ID=Gchil9152.t1|Name=Gchil9152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00004370_pilon:2084040..2085095- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCCACTGTTCGTCGCAGAGCTCTCGCAACATCGTCGAACTCAGA
CTTTTGTCCATCTATTGCCTCCCCTTCCCACAAATCGTTTCCCATCTCAT
CTCGAGCAATATGCATCCTCTCCATCCTACTCACGGCGTCCCTGTTCTCT
ATACATCAGATCATTCGATACAACCGATCTGATCCAATTACTATTAAATT
ACTTGCACCCAACGCAACATCCGACGATGAGGAATCCTTATCATTCTCCA
GAATCCAGGCAGATGATTATGTTCATCCAAACTTCCGCGCTCGCGGAGCG
GCATGTATGCCGAGCGTTACTCGAATAAAAGGTGGAATACCCGTTGAATA
TGTCAGCAACGCTGTCAAGTCCTGGCGACTGGCAACGAACCAAAGCTTAG
ATGTGAGACAGCTCACGGTCTTTGACATGGATCTTCAACCAGCTGCACGC
CCCTCTTGGCTGGATAACGTGTTTGACACTGCTCTTACTGACCTTCCCAG
CTGGCTCAAGCTTAGTAAGAGAGAACGTCCACCTATTCCCCATAGAAAGG
TCACCCTAGGTGATGATGAGCGGCGTGTTGAATGGAGAAGTAAAGAAGCT
CTGGATTACGCAGACGTTCTTCTGCGTTGCATGGAGGAAAACGATGTTGA
GTACATAATTGTTGTTCAGGATGATGTTCTATTTCGCGAGCAGATGAAAA
ATGTCATTCAGTGGTGCGACAAACACTTGAAAGAATCGTTTGTTACCAAT
GCACAAGGGAGACCAAAGCAAATTCGAATGTGCAGTGCATCACTGTTTGA
TCTCTCTGGTGGTGAAGCGGATGCCCATGAGCTTCGTTCGTCTAACATGG
TTGCTCGGGTGTGGAGAAGGGACTTCGTGCAAAGCATGGCGCGTTATTTG
ACAACTAATTTTGATGAGGCACCAGTTGACTGGCTTGCAGATCGTAGATG
CAGAACTCAGAAGAGAAAAACTATTGTAATGGAACCTAATCCTGTGAGAC
ATCGCGGCCGTATCTCATCTTTCCCTTCCAATTTAAGAGAAAAAACCATA
ACATGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:2084040..2085095-

>Gchil9152.t1 ID=Gchil9152.t1|Name=Gchil9152.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00004370_pilon:2084040..2085095- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTTCCACTGTTCGTCGCAGAGCTCTCGCAACATCGTCGAACTCAGA
CTTTTGTCCATCTATTGCCTCCCCTTCCCACAAATCGTTTCCCATCTCAT
CTCGAGCAATATGCATCCTCTCCATCCTACTCACGGCGTCCCTGTTCTCT
ATACATCAGATCATTCGATACAACCGATCTGATCCAATTACTATTAAATT
ACTTGCACCCAACGCAACATCCGACGATGAGGAATCCTTATCATTCTCCA
GAATCCAGGCAGATGATTATGTTCATCCAAACTTCCGCGCTCGCGGAGCG
GCATGTATGCCGAGCGTTACTCGAATAAAAGGTGGAATACCCGTTGAATA
TGTCAGCAACGCTGTCAAGTCCTGGCGACTGGCAACGAACCAAAGCTTAG
ATGTGAGACAGCTCACGGTCTTTGACATGGATCTTCAACCAGCTGCACGC
CCCTCTTGGCTGGATAACGTGTTTGACACTGCTCTTACTGACCTTCCCAG
CTGGCTCAAGCTTAGTAAGAGAGAACGTCCACCTATTCCCCATAGAAAGG
TCACCCTAGGTGATGATGAGCGGCGTGTTGAATGGAGAAGTAAAGAAGCT
CTGGATTACGCAGACGTTCTTCTGCGTTGCATGGAGGAAAACGATGTTGA
GTACATAATTGTTGTTCAGGATGATGTTCTATTTCGCGAGCAGATGAAAA
ATGTCATTCAGTGGTGCGACAAACACTTGAAAGAATCGTTTGTTACCAAT
GCACAAGGGAGACCAAAGCAAATTCGAATGTGCAGTGCATCACTGTTTGA
TCTCTCTGGTGGTGAAGCGGATGCCCATGAGCTTCGTTCGTCTAACATGG
TTGCTCGGGTGTGGAGAAGGGACTTCGTGCAAAGCATGGCGCGTTATTTG
ACAACTAATTTTGATGAGGCACCAGTTGACTGGCTTGCAGATCGTAGATG
CAGAACTCAGAAGAGAAAAACTATTGTAATGGAACCTAATCCTGTGAGAC
ATCGCGGCCGTATCTCATCTTTCCCTTCCAATTTAAGAGAAAAAACCATA
ACATGA
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