Gchil914.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil914.t1
Unique Name	Gchil914.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	620

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000017_pilon	contig	tig00000017_pilon:1343409..1345268 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil914	Gchil914	Gracilaria chilensis NLEC103_M9 male	gene	tig00000017_pilon 1343409..1345268 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil914.t1.start1	Gchil914.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000017_pilon 1343409..1343411 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil914.t1.CDS1	Gchil914.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000017_pilon 1343409..1345268 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil914.t1.exon1	Gchil914.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000017_pilon 1343409..1345268 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil914.t1.stop1	Gchil914.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000017_pilon 1345266..1345268 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil914.t1	Gchil914.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000017_pilon 1343409..1345268 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000017_pilon:1343409..1345268+
coding sequence from alignment at tig00000017_pilon:1343409..1345268+

mRNA sequence

>Gchil914.t1 ID=Gchil914.t1|Name=Gchil914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=620bp
MPSAGPSSNDTPEAQMRFYEKAIKRHNDPLAMVNLADLLFSAKQKELHIP
RAVQLLQRAIKQHKDPTAMNNLALHYLRDGDNQQRRLVIPLLERSLRIEE
DSIVLRNLSDAVKDSRCGKPDPEIAIQLCERALRFGDDPKCIEVLAYNLL
TLKGIKTQRRRAVKLFEKAIHLSNDASVMNCLGVCYVDGTYHLPASSTRA
AKWFEKAIKAGNLPDAKCNLAYLLAGNNLPPSKRDPVRAVRLLEEAIQQV
QSEVCLRTLAKIYRDVEQVSNLPRAIHLMETSLREHGTSFSRNFLLDIFL
GFKSAPADYARALRFCRDDYDRTDHIASFRVLVCIMWSGAVDVKANPPFA
VELMKARSCEQLPEEASALRYESETEDDVLKLVEQLSGSFFFGTKLLIWA
ILLSELESESSLRHAEVLFRTFMNDEEAKVMFAWLPLSLRVCRFTLPFHG
DRKCMTYAMKRATHCYEASLLNLSSFLLEKGCDSSDEKPETVKLLEEAMD
TGLRVPAMLNLGYMLLTGVGGVPMNRGRAIDLFEICIEETDNACARALLA
NALVDGEKCAEEVIRKSLGLWQSVEEEYKDDEEEVSRMRWMISDRAKDVW
ATLNGGDCSQFMASGRLSV*

spliced messenger RNA

>Gchil914.t1 ID=Gchil914.t1|Name=Gchil914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000017_pilon:1343409..1345268+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCCGCCGGGCCGTCGTCCAACGACACCCCCGAGGCCCAAATGCG
CTTTTACGAGAAGGCTATCAAGCGCCACAATGACCCGCTGGCAATGGTCA
ATCTAGCCGACCTTCTTTTCTCCGCCAAGCAAAAAGAGCTCCACATCCCG
CGCGCCGTGCAGCTGCTACAACGCGCCATCAAGCAACATAAAGACCCTAC
CGCCATGAACAATCTTGCGCTGCACTACCTGCGCGACGGAGATAACCAGC
AGCGTCGCCTCGTCATTCCGTTACTCGAGCGTTCCTTGAGAATTGAAGAG
GATTCCATCGTGCTTCGAAACCTTTCTGACGCTGTCAAGGACTCGCGATG
CGGCAAGCCCGACCCCGAGATCGCCATCCAACTCTGCGAACGCGCGCTTA
GATTCGGCGACGATCCCAAATGCATCGAGGTGTTGGCATACAACTTGCTC
ACGCTTAAAGGAATCAAGACGCAGAGAAGACGTGCTGTCAAGCTCTTTGA
AAAAGCCATACACTTATCCAACGACGCATCGGTCATGAACTGCCTGGGAG
TGTGCTACGTAGACGGCACATATCATCTCCCTGCCTCTAGCACACGCGCC
GCCAAATGGTTCGAAAAAGCCATCAAAGCCGGCAATCTCCCCGACGCCAA
GTGCAACTTGGCATATCTATTGGCCGGAAATAACCTACCCCCTTCAAAAC
GAGATCCGGTGCGAGCCGTGCGCCTCCTGGAGGAGGCCATTCAACAAGTC
CAATCCGAAGTCTGCCTCCGAACTCTGGCCAAGATCTACCGAGATGTCGA
ACAAGTATCGAATCTACCCCGCGCCATACATCTCATGGAAACCTCTCTTC
GCGAACACGGGACGTCTTTTTCAAGAAATTTTCTGCTTGATATCTTCCTC
GGTTTTAAGAGCGCACCTGCCGATTACGCAAGAGCACTGCGCTTCTGTCG
AGACGACTATGACCGCACAGACCACATTGCCTCCTTTCGCGTCCTTGTGT
GCATCATGTGGAGTGGTGCCGTAGACGTGAAAGCGAATCCGCCGTTTGCT
GTGGAGTTAATGAAAGCCCGGTCATGTGAACAGCTTCCTGAAGAGGCTTC
GGCACTGCGATATGAAAGCGAAACCGAAGATGATGTCCTAAAGCTGGTCG
AACAATTAAGTGGTTCTTTTTTCTTTGGTACCAAGCTACTAATCTGGGCC
ATTCTTCTCAGCGAATTAGAGTCCGAATCAAGCCTGAGGCACGCCGAAGT
TCTTTTCCGCACGTTCATGAACGATGAGGAAGCGAAGGTTATGTTCGCGT
GGTTACCCCTGTCTTTGAGGGTGTGTCGCTTCACGCTGCCTTTTCATGGC
GATCGGAAGTGCATGACCTATGCGATGAAGCGAGCGACGCACTGCTACGA
GGCAAGCTTGTTGAACCTGTCCAGCTTTCTCCTCGAAAAGGGGTGTGACT
CAAGCGATGAAAAACCAGAGACTGTCAAGCTTCTCGAGGAAGCAATGGAT
ACTGGCTTAAGAGTGCCGGCAATGTTAAACCTAGGTTACATGCTGCTAAC
CGGAGTGGGGGGTGTTCCGATGAATAGAGGGCGTGCCATAGACTTGTTCG
AAATCTGTATTGAAGAAACGGACAATGCGTGTGCTAGGGCTTTGCTTGCG
AATGCCTTGGTTGATGGTGAAAAGTGTGCAGAAGAGGTGATTAGAAAAAG
TCTCGGCTTGTGGCAATCGGTGGAAGAGGAGTACAAAGATGACGAAGAAG
AGGTTTCGAGGATGAGGTGGATGATTTCGGATAGAGCAAAGGATGTATGG
GCAACGCTGAACGGGGGCGATTGCTCTCAATTCATGGCATCGGGGAGACT
GTCTGTATAG

protein sequence of Gchil914.t1

>Gchil914.t1 ID=Gchil914.t1|Name=Gchil914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=620bp
MPSAGPSSNDTPEAQMRFYEKAIKRHNDPLAMVNLADLLFSAKQKELHIP
RAVQLLQRAIKQHKDPTAMNNLALHYLRDGDNQQRRLVIPLLERSLRIEE
DSIVLRNLSDAVKDSRCGKPDPEIAIQLCERALRFGDDPKCIEVLAYNLL
TLKGIKTQRRRAVKLFEKAIHLSNDASVMNCLGVCYVDGTYHLPASSTRA
AKWFEKAIKAGNLPDAKCNLAYLLAGNNLPPSKRDPVRAVRLLEEAIQQV
QSEVCLRTLAKIYRDVEQVSNLPRAIHLMETSLREHGTSFSRNFLLDIFL
GFKSAPADYARALRFCRDDYDRTDHIASFRVLVCIMWSGAVDVKANPPFA
VELMKARSCEQLPEEASALRYESETEDDVLKLVEQLSGSFFFGTKLLIWA
ILLSELESESSLRHAEVLFRTFMNDEEAKVMFAWLPLSLRVCRFTLPFHG
DRKCMTYAMKRATHCYEASLLNLSSFLLEKGCDSSDEKPETVKLLEEAMD
TGLRVPAMLNLGYMLLTGVGGVPMNRGRAIDLFEICIEETDNACARALLA
NALVDGEKCAEEVIRKSLGLWQSVEEEYKDDEEEVSRMRWMISDRAKDVW
ATLNGGDCSQFMASGRLSV*

mRNA from alignment at tig00000017_pilon:1343409..1345268+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil914.t1 ID=Gchil914.t1|Name=Gchil914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1860bp|location=Sequence derived from alignment at tig00000017_pilon:1343409..1345268+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCCGCCGGGCCGTCGTCCAACGACACCCCCGAGGCCCAAATGCG
CTTTTACGAGAAGGCTATCAAGCGCCACAATGACCCGCTGGCAATGGTCA
ATCTAGCCGACCTTCTTTTCTCCGCCAAGCAAAAAGAGCTCCACATCCCG
CGCGCCGTGCAGCTGCTACAACGCGCCATCAAGCAACATAAAGACCCTAC
CGCCATGAACAATCTTGCGCTGCACTACCTGCGCGACGGAGATAACCAGC
AGCGTCGCCTCGTCATTCCGTTACTCGAGCGTTCCTTGAGAATTGAAGAG
GATTCCATCGTGCTTCGAAACCTTTCTGACGCTGTCAAGGACTCGCGATG
CGGCAAGCCCGACCCCGAGATCGCCATCCAACTCTGCGAACGCGCGCTTA
GATTCGGCGACGATCCCAAATGCATCGAGGTGTTGGCATACAACTTGCTC
ACGCTTAAAGGAATCAAGACGCAGAGAAGACGTGCTGTCAAGCTCTTTGA
AAAAGCCATACACTTATCCAACGACGCATCGGTCATGAACTGCCTGGGAG
TGTGCTACGTAGACGGCACATATCATCTCCCTGCCTCTAGCACACGCGCC
GCCAAATGGTTCGAAAAAGCCATCAAAGCCGGCAATCTCCCCGACGCCAA
GTGCAACTTGGCATATCTATTGGCCGGAAATAACCTACCCCCTTCAAAAC
GAGATCCGGTGCGAGCCGTGCGCCTCCTGGAGGAGGCCATTCAACAAGTC
CAATCCGAAGTCTGCCTCCGAACTCTGGCCAAGATCTACCGAGATGTCGA
ACAAGTATCGAATCTACCCCGCGCCATACATCTCATGGAAACCTCTCTTC
GCGAACACGGGACGTCTTTTTCAAGAAATTTTCTGCTTGATATCTTCCTC
GGTTTTAAGAGCGCACCTGCCGATTACGCAAGAGCACTGCGCTTCTGTCG
AGACGACTATGACCGCACAGACCACATTGCCTCCTTTCGCGTCCTTGTGT
GCATCATGTGGAGTGGTGCCGTAGACGTGAAAGCGAATCCGCCGTTTGCT
GTGGAGTTAATGAAAGCCCGGTCATGTGAACAGCTTCCTGAAGAGGCTTC
GGCACTGCGATATGAAAGCGAAACCGAAGATGATGTCCTAAAGCTGGTCG
AACAATTAAGTGGTTCTTTTTTCTTTGGTACCAAGCTACTAATCTGGGCC
ATTCTTCTCAGCGAATTAGAGTCCGAATCAAGCCTGAGGCACGCCGAAGT
TCTTTTCCGCACGTTCATGAACGATGAGGAAGCGAAGGTTATGTTCGCGT
GGTTACCCCTGTCTTTGAGGGTGTGTCGCTTCACGCTGCCTTTTCATGGC
GATCGGAAGTGCATGACCTATGCGATGAAGCGAGCGACGCACTGCTACGA
GGCAAGCTTGTTGAACCTGTCCAGCTTTCTCCTCGAAAAGGGGTGTGACT
CAAGCGATGAAAAACCAGAGACTGTCAAGCTTCTCGAGGAAGCAATGGAT
ACTGGCTTAAGAGTGCCGGCAATGTTAAACCTAGGTTACATGCTGCTAAC
CGGAGTGGGGGGTGTTCCGATGAATAGAGGGCGTGCCATAGACTTGTTCG
AAATCTGTATTGAAGAAACGGACAATGCGTGTGCTAGGGCTTTGCTTGCG
AATGCCTTGGTTGATGGTGAAAAGTGTGCAGAAGAGGTGATTAGAAAAAG
TCTCGGCTTGTGGCAATCGGTGGAAGAGGAGTACAAAGATGACGAAGAAG
AGGTTTCGAGGATGAGGTGGATGATTTCGGATAGAGCAAAGGATGTATGG
GCAACGCTGAACGGGGGCGATTGCTCTCAATTCATGGCATCGGGGAGACT
GTCTGTATAG

Coding sequence (CDS) from alignment at tig00000017_pilon:1343409..1345268+

>Gchil914.t1 ID=Gchil914.t1|Name=Gchil914.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1860bp|location=Sequence derived from alignment at tig00000017_pilon:1343409..1345268+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCGTCCGCCGGGCCGTCGTCCAACGACACCCCCGAGGCCCAAATGCG
CTTTTACGAGAAGGCTATCAAGCGCCACAATGACCCGCTGGCAATGGTCA
ATCTAGCCGACCTTCTTTTCTCCGCCAAGCAAAAAGAGCTCCACATCCCG
CGCGCCGTGCAGCTGCTACAACGCGCCATCAAGCAACATAAAGACCCTAC
CGCCATGAACAATCTTGCGCTGCACTACCTGCGCGACGGAGATAACCAGC
AGCGTCGCCTCGTCATTCCGTTACTCGAGCGTTCCTTGAGAATTGAAGAG
GATTCCATCGTGCTTCGAAACCTTTCTGACGCTGTCAAGGACTCGCGATG
CGGCAAGCCCGACCCCGAGATCGCCATCCAACTCTGCGAACGCGCGCTTA
GATTCGGCGACGATCCCAAATGCATCGAGGTGTTGGCATACAACTTGCTC
ACGCTTAAAGGAATCAAGACGCAGAGAAGACGTGCTGTCAAGCTCTTTGA
AAAAGCCATACACTTATCCAACGACGCATCGGTCATGAACTGCCTGGGAG
TGTGCTACGTAGACGGCACATATCATCTCCCTGCCTCTAGCACACGCGCC
GCCAAATGGTTCGAAAAAGCCATCAAAGCCGGCAATCTCCCCGACGCCAA
GTGCAACTTGGCATATCTATTGGCCGGAAATAACCTACCCCCTTCAAAAC
GAGATCCGGTGCGAGCCGTGCGCCTCCTGGAGGAGGCCATTCAACAAGTC
CAATCCGAAGTCTGCCTCCGAACTCTGGCCAAGATCTACCGAGATGTCGA
ACAAGTATCGAATCTACCCCGCGCCATACATCTCATGGAAACCTCTCTTC
GCGAACACGGGACGTCTTTTTCAAGAAATTTTCTGCTTGATATCTTCCTC
GGTTTTAAGAGCGCACCTGCCGATTACGCAAGAGCACTGCGCTTCTGTCG
AGACGACTATGACCGCACAGACCACATTGCCTCCTTTCGCGTCCTTGTGT
GCATCATGTGGAGTGGTGCCGTAGACGTGAAAGCGAATCCGCCGTTTGCT
GTGGAGTTAATGAAAGCCCGGTCATGTGAACAGCTTCCTGAAGAGGCTTC
GGCACTGCGATATGAAAGCGAAACCGAAGATGATGTCCTAAAGCTGGTCG
AACAATTAAGTGGTTCTTTTTTCTTTGGTACCAAGCTACTAATCTGGGCC
ATTCTTCTCAGCGAATTAGAGTCCGAATCAAGCCTGAGGCACGCCGAAGT
TCTTTTCCGCACGTTCATGAACGATGAGGAAGCGAAGGTTATGTTCGCGT
GGTTACCCCTGTCTTTGAGGGTGTGTCGCTTCACGCTGCCTTTTCATGGC
GATCGGAAGTGCATGACCTATGCGATGAAGCGAGCGACGCACTGCTACGA
GGCAAGCTTGTTGAACCTGTCCAGCTTTCTCCTCGAAAAGGGGTGTGACT
CAAGCGATGAAAAACCAGAGACTGTCAAGCTTCTCGAGGAAGCAATGGAT
ACTGGCTTAAGAGTGCCGGCAATGTTAAACCTAGGTTACATGCTGCTAAC
CGGAGTGGGGGGTGTTCCGATGAATAGAGGGCGTGCCATAGACTTGTTCG
AAATCTGTATTGAAGAAACGGACAATGCGTGTGCTAGGGCTTTGCTTGCG
AATGCCTTGGTTGATGGTGAAAAGTGTGCAGAAGAGGTGATTAGAAAAAG
TCTCGGCTTGTGGCAATCGGTGGAAGAGGAGTACAAAGATGACGAAGAAG
AGGTTTCGAGGATGAGGTGGATGATTTCGGATAGAGCAAAGGATGTATGG
GCAACGCTGAACGGGGGCGATTGCTCTCAATTCATGGCATCGGGGAGACT
GTCTGTATAG