Gchil9120.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9120.t1
Unique NameGchil9120.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1942466..1943857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog224911.27354425
Preferred nameMA20_34775
PFAMsM20_dimer,Peptidase_M20,Peptidase_M28
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00064
KEGG koko:K02083
KEGG ReactionR02423
KEGG Pathwayko00230,ko01120,map00230,map01120
Evalue9.83e-81
EggNOG OGsCOG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2TR5X@28211|Alphaproteobacteria,3JRW7@41294|Bradyrhizobiaceae
EC3.5.3.9
DescriptionPeptidase family M28
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9120Gchil9120Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1942466..1943857 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9120.t1.stop1Gchil9120.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1942466..1942468 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9120.t1.CDS1Gchil9120.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1942466..1943857 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9120.t1.exon1Gchil9120.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1942466..1943857 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9120.t1.start1Gchil9120.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1943855..1943857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9120.t1Gchil9120.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1942466..1943857 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9120.t1 ID=Gchil9120.t1|Name=Gchil9120.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=464bp
MTAASLPSSAASTLLPPLLFCAFLFASHRPVPRAHSPSRAPIVVANRTED
AVQRVASQVVGQLHVLSKLSDSQVFLNRPFLSEASARSQRELLGLMSDAG
LDAFIDGAGNVRGTLSCVGSLAPRRTLLMGSHHDTVTNGGKFDGVLGVLS
AIALTRLYQSSICYLPFDLAVIAFDDEEGNNAFSITNFGARAFIGQDLSH
LTATSSFQTAYKSMFPTADVDASVRAAALTAAEMDDLLGYIELHIEQGPV
LERLNRPLAAVSAIAGQTRMAIRLDGHAAHAGTVPMTQRRDALTAAAQLV
LEIESLGLAHTHDHLVATVGRLQVAPGATNVVPGEVSFTVDVRSRTDAVR
KDVVQRIVDAVEIVGKKRRIAVQVDVVHNVDAVHMSEWLVNILNGVAGGH
TLTSGAGHDAQFMAKVTDVGMLFVRCKHGISHSPEEHVSDEDVYHGIVAL
EAAVLRVAEKEAH*
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spliced messenger RNA

>Gchil9120.t1 ID=Gchil9120.t1|Name=Gchil9120.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00004370_pilon:1942466..1943857- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCGCTTCCCTTCCGTCTTCAGCAGCCTCTACTTTGCTGCCGCC
TCTACTTTTTTGCGCCTTCCTTTTCGCTTCTCACCGCCCTGTGCCTCGTG
CTCACTCCCCATCGCGCGCGCCCATTGTCGTCGCTAATCGTACGGAGGAT
GCTGTGCAGCGCGTTGCTTCTCAGGTCGTTGGCCAATTGCATGTGCTTTC
TAAACTGAGTGACTCGCAAGTTTTTCTCAATCGCCCTTTTCTTTCAGAGG
CATCGGCTCGCTCTCAGCGTGAGCTGCTTGGCCTTATGAGTGATGCAGGT
CTTGACGCTTTCATAGATGGCGCGGGCAATGTTCGGGGCACCCTTTCGTG
TGTGGGTTCCCTAGCTCCGCGCCGCACCTTGTTAATGGGCAGTCACCACG
ACACTGTCACCAACGGCGGCAAGTTCGATGGCGTTTTGGGTGTGCTCTCG
GCTATCGCTCTCACTCGTTTGTACCAGTCTTCCATATGTTATCTTCCCTT
TGATCTCGCAGTGATTGCCTTTGACGATGAGGAAGGTAACAATGCGTTCT
CCATCACAAATTTTGGAGCACGCGCTTTTATTGGCCAGGATTTGTCACAT
CTCACAGCCACGTCATCATTTCAAACCGCGTACAAATCCATGTTCCCGAC
GGCTGATGTGGATGCGTCGGTGCGTGCTGCAGCACTCACTGCAGCTGAGA
TGGACGATTTGCTGGGCTACATAGAGCTGCATATTGAGCAAGGGCCCGTG
CTCGAGCGACTGAATCGTCCGCTTGCTGCCGTCAGTGCCATTGCAGGGCA
GACGCGCATGGCGATTCGTCTGGACGGTCATGCTGCGCATGCTGGAACAG
TCCCCATGACGCAGAGGCGGGATGCGCTTACCGCCGCTGCGCAGCTCGTT
TTGGAGATTGAGTCGCTCGGGCTTGCCCACACACATGACCATCTTGTCGC
GACTGTCGGTCGGTTGCAAGTTGCGCCTGGTGCTACCAATGTGGTGCCGG
GTGAGGTTTCTTTTACCGTGGATGTGAGATCTAGGACGGACGCTGTTAGA
AAGGATGTTGTTCAACGTATTGTGGATGCTGTTGAGATTGTTGGCAAGAA
ACGTCGCATTGCAGTTCAGGTGGATGTTGTACATAATGTCGATGCTGTGC
ACATGAGCGAATGGCTGGTAAATATTTTGAATGGCGTTGCTGGAGGTCAC
ACACTCACCAGCGGTGCTGGCCACGACGCTCAGTTTATGGCAAAGGTTAC
CGATGTTGGCATGCTTTTCGTTCGATGTAAACATGGTATCAGTCACAGTC
CCGAAGAACATGTGAGTGACGAGGACGTTTATCACGGCATAGTAGCCTTG
GAGGCGGCTGTGCTGCGGGTTGCGGAGAAAGAAGCTCACTGA
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protein sequence of Gchil9120.t1

>Gchil9120.t1 ID=Gchil9120.t1|Name=Gchil9120.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=464bp
MTAASLPSSAASTLLPPLLFCAFLFASHRPVPRAHSPSRAPIVVANRTED
AVQRVASQVVGQLHVLSKLSDSQVFLNRPFLSEASARSQRELLGLMSDAG
LDAFIDGAGNVRGTLSCVGSLAPRRTLLMGSHHDTVTNGGKFDGVLGVLS
AIALTRLYQSSICYLPFDLAVIAFDDEEGNNAFSITNFGARAFIGQDLSH
LTATSSFQTAYKSMFPTADVDASVRAAALTAAEMDDLLGYIELHIEQGPV
LERLNRPLAAVSAIAGQTRMAIRLDGHAAHAGTVPMTQRRDALTAAAQLV
LEIESLGLAHTHDHLVATVGRLQVAPGATNVVPGEVSFTVDVRSRTDAVR
KDVVQRIVDAVEIVGKKRRIAVQVDVVHNVDAVHMSEWLVNILNGVAGGH
TLTSGAGHDAQFMAKVTDVGMLFVRCKHGISHSPEEHVSDEDVYHGIVAL
EAAVLRVAEKEAH*
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mRNA from alignment at tig00004370_pilon:1942466..1943857-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9120.t1 ID=Gchil9120.t1|Name=Gchil9120.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00004370_pilon:1942466..1943857- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCCGCTTCCCTTCCGTCTTCAGCAGCCTCTACTTTGCTGCCGCC
TCTACTTTTTTGCGCCTTCCTTTTCGCTTCTCACCGCCCTGTGCCTCGTG
CTCACTCCCCATCGCGCGCGCCCATTGTCGTCGCTAATCGTACGGAGGAT
GCTGTGCAGCGCGTTGCTTCTCAGGTCGTTGGCCAATTGCATGTGCTTTC
TAAACTGAGTGACTCGCAAGTTTTTCTCAATCGCCCTTTTCTTTCAGAGG
CATCGGCTCGCTCTCAGCGTGAGCTGCTTGGCCTTATGAGTGATGCAGGT
CTTGACGCTTTCATAGATGGCGCGGGCAATGTTCGGGGCACCCTTTCGTG
TGTGGGTTCCCTAGCTCCGCGCCGCACCTTGTTAATGGGCAGTCACCACG
ACACTGTCACCAACGGCGGCAAGTTCGATGGCGTTTTGGGTGTGCTCTCG
GCTATCGCTCTCACTCGTTTGTACCAGTCTTCCATATGTTATCTTCCCTT
TGATCTCGCAGTGATTGCCTTTGACGATGAGGAAGGTAACAATGCGTTCT
CCATCACAAATTTTGGAGCACGCGCTTTTATTGGCCAGGATTTGTCACAT
CTCACAGCCACGTCATCATTTCAAACCGCGTACAAATCCATGTTCCCGAC
GGCTGATGTGGATGCGTCGGTGCGTGCTGCAGCACTCACTGCAGCTGAGA
TGGACGATTTGCTGGGCTACATAGAGCTGCATATTGAGCAAGGGCCCGTG
CTCGAGCGACTGAATCGTCCGCTTGCTGCCGTCAGTGCCATTGCAGGGCA
GACGCGCATGGCGATTCGTCTGGACGGTCATGCTGCGCATGCTGGAACAG
TCCCCATGACGCAGAGGCGGGATGCGCTTACCGCCGCTGCGCAGCTCGTT
TTGGAGATTGAGTCGCTCGGGCTTGCCCACACACATGACCATCTTGTCGC
GACTGTCGGTCGGTTGCAAGTTGCGCCTGGTGCTACCAATGTGGTGCCGG
GTGAGGTTTCTTTTACCGTGGATGTGAGATCTAGGACGGACGCTGTTAGA
AAGGATGTTGTTCAACGTATTGTGGATGCTGTTGAGATTGTTGGCAAGAA
ACGTCGCATTGCAGTTCAGGTGGATGTTGTACATAATGTCGATGCTGTGC
ACATGAGCGAATGGCTGGTAAATATTTTGAATGGCGTTGCTGGAGGTCAC
ACACTCACCAGCGGTGCTGGCCACGACGCTCAGTTTATGGCAAAGGTTAC
CGATGTTGGCATGCTTTTCGTTCGATGTAAACATGGTATCAGTCACAGTC
CCGAAGAACATGTGAGTGACGAGGACGTTTATCACGGCATAGTAGCCTTG
GAGGCGGCTGTGCTGCGGGTTGCGGAGAAAGAAGCTCACTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1942466..1943857-

>Gchil9120.t1 ID=Gchil9120.t1|Name=Gchil9120.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00004370_pilon:1942466..1943857- (Gracilaria chilensis NLEC103_M9 male)
ATGACCGCCGCTTCCCTTCCGTCTTCAGCAGCCTCTACTTTGCTGCCGCC
TCTACTTTTTTGCGCCTTCCTTTTCGCTTCTCACCGCCCTGTGCCTCGTG
CTCACTCCCCATCGCGCGCGCCCATTGTCGTCGCTAATCGTACGGAGGAT
GCTGTGCAGCGCGTTGCTTCTCAGGTCGTTGGCCAATTGCATGTGCTTTC
TAAACTGAGTGACTCGCAAGTTTTTCTCAATCGCCCTTTTCTTTCAGAGG
CATCGGCTCGCTCTCAGCGTGAGCTGCTTGGCCTTATGAGTGATGCAGGT
CTTGACGCTTTCATAGATGGCGCGGGCAATGTTCGGGGCACCCTTTCGTG
TGTGGGTTCCCTAGCTCCGCGCCGCACCTTGTTAATGGGCAGTCACCACG
ACACTGTCACCAACGGCGGCAAGTTCGATGGCGTTTTGGGTGTGCTCTCG
GCTATCGCTCTCACTCGTTTGTACCAGTCTTCCATATGTTATCTTCCCTT
TGATCTCGCAGTGATTGCCTTTGACGATGAGGAAGGTAACAATGCGTTCT
CCATCACAAATTTTGGAGCACGCGCTTTTATTGGCCAGGATTTGTCACAT
CTCACAGCCACGTCATCATTTCAAACCGCGTACAAATCCATGTTCCCGAC
GGCTGATGTGGATGCGTCGGTGCGTGCTGCAGCACTCACTGCAGCTGAGA
TGGACGATTTGCTGGGCTACATAGAGCTGCATATTGAGCAAGGGCCCGTG
CTCGAGCGACTGAATCGTCCGCTTGCTGCCGTCAGTGCCATTGCAGGGCA
GACGCGCATGGCGATTCGTCTGGACGGTCATGCTGCGCATGCTGGAACAG
TCCCCATGACGCAGAGGCGGGATGCGCTTACCGCCGCTGCGCAGCTCGTT
TTGGAGATTGAGTCGCTCGGGCTTGCCCACACACATGACCATCTTGTCGC
GACTGTCGGTCGGTTGCAAGTTGCGCCTGGTGCTACCAATGTGGTGCCGG
GTGAGGTTTCTTTTACCGTGGATGTGAGATCTAGGACGGACGCTGTTAGA
AAGGATGTTGTTCAACGTATTGTGGATGCTGTTGAGATTGTTGGCAAGAA
ACGTCGCATTGCAGTTCAGGTGGATGTTGTACATAATGTCGATGCTGTGC
ACATGAGCGAATGGCTGGTAAATATTTTGAATGGCGTTGCTGGAGGTCAC
ACACTCACCAGCGGTGCTGGCCACGACGCTCAGTTTATGGCAAAGGTTAC
CGATGTTGGCATGCTTTTCGTTCGATGTAAACATGGTATCAGTCACAGTC
CCGAAGAACATGTGAGTGACGAGGACGTTTATCACGGCATAGTAGCCTTG
GAGGCGGCTGTGCTGCGGGTTGCGGAGAAAGAAGCTCACTGA
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