Gchil9110.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9110.t1
Unique NameGchil9110.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1917536..1919375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9110Gchil9110Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1917536..1919375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9110.t1Gchil9110.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1917536..1919375 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9110.t1.stop1Gchil9110.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1917536..1917538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9110.t1.CDS1Gchil9110.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1917536..1918978 -
Gchil9110.t1.CDS2Gchil9110.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1919205..1919375 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9110.t1.exon1Gchil9110.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1917536..1918978 -
Gchil9110.t1.exon2Gchil9110.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1919205..1919375 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9110.t1.intron1Gchil9110.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 1918979..1919204 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9110.t1.start1Gchil9110.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1919373..1919375 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9110.t1 ID=Gchil9110.t1|Name=Gchil9110.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=538bp
MTLSLVSIRLLLYLQQQCGSSLSALAQIGGPCCCISFGRLATLFDTPTHW
FSTSLSLLLERLYVHTSSLQFRLTGKTFSLDSGEVSVFRGLKSVLNTLSC
HRINRTKTYISSTWVSFLILLSLISLPSEIWVETGIDELNNCRPVMTNST
GVCSSPWNGHSDVGIASAALLVQRSAWIDSDWDIVYEGSSVNMSLNDVHV
NEIGKFALSNAQPAALASNCNVQVQPCTNCGTLTVGKDCGTFDTIITNAS
IVDAPNYCQKKNDANYCRGDVTYDTATGLAFFFWSVRTENENGQRQVATK
GIEVLLNEQDKRKVLTGNEAVWKISPDSNRSRLYSISCASKGLHWTDLTR
AVSIYRTVQMERPGEKKENVNGNIKNIMPLTSSDVLRSLFALKAEDISST
CDGLVPQYTQCGTFDVSKASILLVVNSFAVLLYLALRIAGLKQRHVPFPT
NVSSWKKYATGARESNGDFAIAMESESPDNRLVVIDLSRLMSKSLSYQQP
KAPVIEVTSSTASHLVSNTSDERRELVQKRAACMPAG*
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spliced messenger RNA

>Gchil9110.t1 ID=Gchil9110.t1|Name=Gchil9110.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00004370_pilon:1917536..1919375- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCTATCACTTGTAAGTATTAGATTGCTACTGTACTTACAGCAGCA
GTGCGGCAGCTCTCTAAGCGCTCTTGCACAAATCGGAGGTCCATGCTGCT
GCATTTCATTTGGACGACTCGCAACACTTTTCGATACCCCCACACACTGG
TTTTCTACCTCTTTAAGCTTATTGTTGGAAAGGCTTTACGTTCACACGTC
CAGTCTCCAGTTTCGATTGACCGGAAAGACATTTTCACTTGATTCTGGAG
AAGTAAGTGTATTTCGCGGACTCAAGTCTGTGCTTAACACACTCTCCTGT
CACAGAATCAATCGTACCAAAACGTACATTTCATCAACATGGGTTTCCTT
CCTCATCCTTCTTTCTCTAATCTCTTTACCGTCTGAAATATGGGTCGAAA
CAGGCATTGACGAACTGAACAATTGTCGGCCGGTAATGACAAACAGTACC
GGAGTTTGCTCTTCACCCTGGAATGGTCATTCTGATGTTGGCATTGCTTC
AGCCGCATTACTCGTCCAAAGGTCTGCTTGGATTGATTCCGATTGGGACA
TAGTTTACGAAGGTTCTAGCGTCAATATGAGTTTAAACGACGTTCACGTA
AATGAAATTGGCAAATTTGCTCTTTCAAATGCTCAACCAGCAGCGTTGGC
GAGCAACTGCAATGTCCAAGTCCAACCTTGTACGAATTGTGGAACACTGA
CTGTCGGAAAGGATTGCGGTACATTTGACACCATCATAACAAACGCTTCA
ATAGTCGACGCCCCGAATTATTGTCAAAAGAAGAATGACGCTAACTATTG
TCGGGGTGATGTTACGTACGATACGGCAACTGGTCTCGCGTTCTTTTTCT
GGTCAGTTCGAACCGAAAACGAAAATGGCCAACGCCAAGTAGCAACGAAA
GGCATCGAGGTACTTCTTAATGAACAAGATAAACGAAAAGTCCTCACCGG
AAATGAGGCTGTCTGGAAAATATCTCCCGATAGCAATAGGTCGAGGCTGT
ATTCAATATCTTGCGCTTCTAAGGGGCTACATTGGACAGATTTAACAAGA
GCTGTATCAATCTACAGAACAGTTCAAATGGAACGTCCGGGTGAGAAGAA
AGAGAATGTCAACGGAAACATTAAGAATATTATGCCCTTAACAAGCAGTG
ATGTTCTCAGATCCTTGTTTGCGCTCAAGGCTGAGGATATTAGCTCAACT
TGCGACGGCCTAGTTCCGCAGTATACACAGTGTGGTACCTTCGATGTATC
CAAAGCATCAATTCTTTTGGTGGTAAATTCTTTTGCAGTTTTACTATACC
TTGCTCTCCGGATTGCTGGGCTCAAGCAGAGGCATGTACCATTTCCTACG
AATGTCAGTTCTTGGAAGAAGTATGCGACTGGGGCGCGAGAAAGCAATGG
AGATTTCGCAATAGCAATGGAATCCGAGAGCCCTGATAATAGATTGGTGG
TGATTGATTTGAGCAGACTGATGTCAAAAAGCCTATCATATCAACAACCG
AAGGCCCCTGTGATAGAAGTTACATCGAGCACGGCATCGCATCTCGTCTC
CAATACATCCGACGAACGAAGAGAGTTAGTACAGAAGAGGGCAGCTTGCA
TGCCAGCGGGTTAA
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protein sequence of Gchil9110.t1

>Gchil9110.t1 ID=Gchil9110.t1|Name=Gchil9110.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=538bp
MTLSLVSIRLLLYLQQQCGSSLSALAQIGGPCCCISFGRLATLFDTPTHW
FSTSLSLLLERLYVHTSSLQFRLTGKTFSLDSGEVSVFRGLKSVLNTLSC
HRINRTKTYISSTWVSFLILLSLISLPSEIWVETGIDELNNCRPVMTNST
GVCSSPWNGHSDVGIASAALLVQRSAWIDSDWDIVYEGSSVNMSLNDVHV
NEIGKFALSNAQPAALASNCNVQVQPCTNCGTLTVGKDCGTFDTIITNAS
IVDAPNYCQKKNDANYCRGDVTYDTATGLAFFFWSVRTENENGQRQVATK
GIEVLLNEQDKRKVLTGNEAVWKISPDSNRSRLYSISCASKGLHWTDLTR
AVSIYRTVQMERPGEKKENVNGNIKNIMPLTSSDVLRSLFALKAEDISST
CDGLVPQYTQCGTFDVSKASILLVVNSFAVLLYLALRIAGLKQRHVPFPT
NVSSWKKYATGARESNGDFAIAMESESPDNRLVVIDLSRLMSKSLSYQQP
KAPVIEVTSSTASHLVSNTSDERRELVQKRAACMPAG*
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mRNA from alignment at tig00004370_pilon:1917536..1919375-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9110.t1 ID=Gchil9110.t1|Name=Gchil9110.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1840bp|location=Sequence derived from alignment at tig00004370_pilon:1917536..1919375- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCTATCACTTGTAAGTATTAGATTGCTACTGTACTTACAGCAGCA
GTGCGGCAGCTCTCTAAGCGCTCTTGCACAAATCGGAGGTCCATGCTGCT
GCATTTCATTTGGACGACTCGCAACACTTTTCGATACCCCCACACACTGG
TTTTCTACCTCTTTAAGCTTAGTACGTTACCTATTCTTATCCACTACATT
TTTCGCCCTTACCGCGCAAAAAGGCTCAAAACGTCCCTCGGCCGTAGACA
ACTTCTCAAGGCTCATCCACTTCATCCATGCTTCCCGACAGCTTTGCGTA
CCGGAGTAGTGCTCATCCCTGACACATGGTGTCTTTACAAATCGTAAATG
CCTTGCTTAATGTTTTCCTGTGGCTCACAAATGCTCTCTTCGCCAAGTTG
TTGGAAAGGCTTTACGTTCACACGTCCAGTCTCCAGTTTCGATTGACCGG
AAAGACATTTTCACTTGATTCTGGAGAAGTAAGTGTATTTCGCGGACTCA
AGTCTGTGCTTAACACACTCTCCTGTCACAGAATCAATCGTACCAAAACG
TACATTTCATCAACATGGGTTTCCTTCCTCATCCTTCTTTCTCTAATCTC
TTTACCGTCTGAAATATGGGTCGAAACAGGCATTGACGAACTGAACAATT
GTCGGCCGGTAATGACAAACAGTACCGGAGTTTGCTCTTCACCCTGGAAT
GGTCATTCTGATGTTGGCATTGCTTCAGCCGCATTACTCGTCCAAAGGTC
TGCTTGGATTGATTCCGATTGGGACATAGTTTACGAAGGTTCTAGCGTCA
ATATGAGTTTAAACGACGTTCACGTAAATGAAATTGGCAAATTTGCTCTT
TCAAATGCTCAACCAGCAGCGTTGGCGAGCAACTGCAATGTCCAAGTCCA
ACCTTGTACGAATTGTGGAACACTGACTGTCGGAAAGGATTGCGGTACAT
TTGACACCATCATAACAAACGCTTCAATAGTCGACGCCCCGAATTATTGT
CAAAAGAAGAATGACGCTAACTATTGTCGGGGTGATGTTACGTACGATAC
GGCAACTGGTCTCGCGTTCTTTTTCTGGTCAGTTCGAACCGAAAACGAAA
ATGGCCAACGCCAAGTAGCAACGAAAGGCATCGAGGTACTTCTTAATGAA
CAAGATAAACGAAAAGTCCTCACCGGAAATGAGGCTGTCTGGAAAATATC
TCCCGATAGCAATAGGTCGAGGCTGTATTCAATATCTTGCGCTTCTAAGG
GGCTACATTGGACAGATTTAACAAGAGCTGTATCAATCTACAGAACAGTT
CAAATGGAACGTCCGGGTGAGAAGAAAGAGAATGTCAACGGAAACATTAA
GAATATTATGCCCTTAACAAGCAGTGATGTTCTCAGATCCTTGTTTGCGC
TCAAGGCTGAGGATATTAGCTCAACTTGCGACGGCCTAGTTCCGCAGTAT
ACACAGTGTGGTACCTTCGATGTATCCAAAGCATCAATTCTTTTGGTGGT
AAATTCTTTTGCAGTTTTACTATACCTTGCTCTCCGGATTGCTGGGCTCA
AGCAGAGGCATGTACCATTTCCTACGAATGTCAGTTCTTGGAAGAAGTAT
GCGACTGGGGCGCGAGAAAGCAATGGAGATTTCGCAATAGCAATGGAATC
CGAGAGCCCTGATAATAGATTGGTGGTGATTGATTTGAGCAGACTGATGT
CAAAAAGCCTATCATATCAACAACCGAAGGCCCCTGTGATAGAAGTTACA
TCGAGCACGGCATCGCATCTCGTCTCCAATACATCCGACGAACGAAGAGA
GTTAGTACAGAAGAGGGCAGCTTGCATGCCAGCGGGTTAA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1917536..1919375-

>Gchil9110.t1 ID=Gchil9110.t1|Name=Gchil9110.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1614bp|location=Sequence derived from alignment at tig00004370_pilon:1917536..1919375- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCTATCACTTGTAAGTATTAGATTGCTACTGTACTTACAGCAGCA
GTGCGGCAGCTCTCTAAGCGCTCTTGCACAAATCGGAGGTCCATGCTGCT
GCATTTCATTTGGACGACTCGCAACACTTTTCGATACCCCCACACACTGG
TTTTCTACCTCTTTAAGCTTATTGTTGGAAAGGCTTTACGTTCACACGTC
CAGTCTCCAGTTTCGATTGACCGGAAAGACATTTTCACTTGATTCTGGAG
AAGTAAGTGTATTTCGCGGACTCAAGTCTGTGCTTAACACACTCTCCTGT
CACAGAATCAATCGTACCAAAACGTACATTTCATCAACATGGGTTTCCTT
CCTCATCCTTCTTTCTCTAATCTCTTTACCGTCTGAAATATGGGTCGAAA
CAGGCATTGACGAACTGAACAATTGTCGGCCGGTAATGACAAACAGTACC
GGAGTTTGCTCTTCACCCTGGAATGGTCATTCTGATGTTGGCATTGCTTC
AGCCGCATTACTCGTCCAAAGGTCTGCTTGGATTGATTCCGATTGGGACA
TAGTTTACGAAGGTTCTAGCGTCAATATGAGTTTAAACGACGTTCACGTA
AATGAAATTGGCAAATTTGCTCTTTCAAATGCTCAACCAGCAGCGTTGGC
GAGCAACTGCAATGTCCAAGTCCAACCTTGTACGAATTGTGGAACACTGA
CTGTCGGAAAGGATTGCGGTACATTTGACACCATCATAACAAACGCTTCA
ATAGTCGACGCCCCGAATTATTGTCAAAAGAAGAATGACGCTAACTATTG
TCGGGGTGATGTTACGTACGATACGGCAACTGGTCTCGCGTTCTTTTTCT
GGTCAGTTCGAACCGAAAACGAAAATGGCCAACGCCAAGTAGCAACGAAA
GGCATCGAGGTACTTCTTAATGAACAAGATAAACGAAAAGTCCTCACCGG
AAATGAGGCTGTCTGGAAAATATCTCCCGATAGCAATAGGTCGAGGCTGT
ATTCAATATCTTGCGCTTCTAAGGGGCTACATTGGACAGATTTAACAAGA
GCTGTATCAATCTACAGAACAGTTCAAATGGAACGTCCGGGTGAGAAGAA
AGAGAATGTCAACGGAAACATTAAGAATATTATGCCCTTAACAAGCAGTG
ATGTTCTCAGATCCTTGTTTGCGCTCAAGGCTGAGGATATTAGCTCAACT
TGCGACGGCCTAGTTCCGCAGTATACACAGTGTGGTACCTTCGATGTATC
CAAAGCATCAATTCTTTTGGTGGTAAATTCTTTTGCAGTTTTACTATACC
TTGCTCTCCGGATTGCTGGGCTCAAGCAGAGGCATGTACCATTTCCTACG
AATGTCAGTTCTTGGAAGAAGTATGCGACTGGGGCGCGAGAAAGCAATGG
AGATTTCGCAATAGCAATGGAATCCGAGAGCCCTGATAATAGATTGGTGG
TGATTGATTTGAGCAGACTGATGTCAAAAAGCCTATCATATCAACAACCG
AAGGCCCCTGTGATAGAAGTTACATCGAGCACGGCATCGCATCTCGTCTC
CAATACATCCGACGAACGAAGAGAGTTAGTACAGAAGAGGGCAGCTTGCA
TGCCAGCGGGTTAA
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