Gchil9063.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9063.t1
Unique NameGchil9063.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1266802..1267701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9063Gchil9063Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1266802..1267701 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9063.t1.stop1Gchil9063.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1266802..1266804 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9063.t1.CDS1Gchil9063.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1266802..1267701 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9063.t1.exon1Gchil9063.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1266802..1267701 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9063.t1.start1Gchil9063.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1267699..1267701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9063.t1Gchil9063.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1266802..1267701 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9063.t1 ID=Gchil9063.t1|Name=Gchil9063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=300bp
MSVDVLRDNLADREAKLDVLRKKVKHAKERAARPKSKATISSIQQRYLSA
IADLEDKEKELPKAHVRSTANAVSSLASRWNQGIDERKVEKTKVHVRGDI
TAAKKNFAYSDAPSATKAGARASSGAADSGPSEIVVEDGSDIPSWAKNQR
KLVIKKENARSSVRVDVKELQGSVLMNAARDGSEAERTTKVEHAGNVKAA
LAMWGKTAEEDAKILAKKKQEEERERVLQEKLRKEREAEELARAYNAAVQ
EFAKMTLADMDDEPSKEIELIAFLERKITLVEQEIKKLEGELAELEAAE*
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spliced messenger RNA

>Gchil9063.t1 ID=Gchil9063.t1|Name=Gchil9063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004370_pilon:1266802..1267701- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTCGACGTCCTGCGCGACAACCTCGCCGACCGCGAGGCAAAGCT
CGACGTCCTTCGCAAAAAGGTCAAGCACGCAAAAGAACGTGCCGCGCGAC
CAAAATCAAAGGCCACCATCTCCAGCATCCAGCAACGTTACCTCTCCGCC
ATCGCCGACCTGGAGGACAAAGAAAAGGAACTTCCAAAGGCTCACGTTCG
TTCCACCGCAAACGCCGTGTCGTCTCTGGCGAGTCGCTGGAACCAAGGCA
TCGACGAGCGCAAGGTAGAAAAGACCAAAGTCCACGTCCGTGGCGACATC
ACCGCTGCCAAGAAGAATTTTGCATACAGTGATGCACCATCTGCAACCAA
AGCTGGTGCGCGCGCTTCCAGCGGCGCCGCTGACTCTGGCCCTTCTGAAA
TTGTCGTTGAAGATGGCTCTGACATTCCGAGCTGGGCAAAGAATCAACGC
AAGCTTGTCATCAAGAAGGAAAATGCCAGAAGTTCTGTGCGTGTCGATGT
CAAGGAGCTCCAAGGAAGTGTGCTTATGAACGCAGCCAGGGACGGTTCCG
AGGCTGAACGCACCACCAAGGTCGAGCATGCCGGAAACGTCAAGGCCGCA
TTGGCCATGTGGGGAAAAACAGCCGAGGAAGATGCAAAGATACTCGCCAA
AAAGAAACAAGAGGAGGAAAGAGAACGAGTATTGCAGGAGAAGCTTCGGA
AAGAGCGTGAGGCCGAGGAGCTTGCAAGAGCTTACAACGCAGCCGTTCAA
GAGTTTGCTAAGATGACGCTCGCCGATATGGACGATGAGCCCAGCAAGGA
AATTGAACTCATCGCTTTTTTGGAGAGGAAAATCACTCTTGTCGAGCAAG
AAATCAAAAAACTGGAGGGCGAGCTCGCCGAGTTGGAAGCCGCTGAGTGA
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protein sequence of Gchil9063.t1

>Gchil9063.t1 ID=Gchil9063.t1|Name=Gchil9063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=300bp
MSVDVLRDNLADREAKLDVLRKKVKHAKERAARPKSKATISSIQQRYLSA
IADLEDKEKELPKAHVRSTANAVSSLASRWNQGIDERKVEKTKVHVRGDI
TAAKKNFAYSDAPSATKAGARASSGAADSGPSEIVVEDGSDIPSWAKNQR
KLVIKKENARSSVRVDVKELQGSVLMNAARDGSEAERTTKVEHAGNVKAA
LAMWGKTAEEDAKILAKKKQEEERERVLQEKLRKEREAEELARAYNAAVQ
EFAKMTLADMDDEPSKEIELIAFLERKITLVEQEIKKLEGELAELEAAE*
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mRNA from alignment at tig00004370_pilon:1266802..1267701-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9063.t1 ID=Gchil9063.t1|Name=Gchil9063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00004370_pilon:1266802..1267701- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGTCGACGTCCTGCGCGACAACCTCGCCGACCGCGAGGCAAAGCT
CGACGTCCTTCGCAAAAAGGTCAAGCACGCAAAAGAACGTGCCGCGCGAC
CAAAATCAAAGGCCACCATCTCCAGCATCCAGCAACGTTACCTCTCCGCC
ATCGCCGACCTGGAGGACAAAGAAAAGGAACTTCCAAAGGCTCACGTTCG
TTCCACCGCAAACGCCGTGTCGTCTCTGGCGAGTCGCTGGAACCAAGGCA
TCGACGAGCGCAAGGTAGAAAAGACCAAAGTCCACGTCCGTGGCGACATC
ACCGCTGCCAAGAAGAATTTTGCATACAGTGATGCACCATCTGCAACCAA
AGCTGGTGCGCGCGCTTCCAGCGGCGCCGCTGACTCTGGCCCTTCTGAAA
TTGTCGTTGAAGATGGCTCTGACATTCCGAGCTGGGCAAAGAATCAACGC
AAGCTTGTCATCAAGAAGGAAAATGCCAGAAGTTCTGTGCGTGTCGATGT
CAAGGAGCTCCAAGGAAGTGTGCTTATGAACGCAGCCAGGGACGGTTCCG
AGGCTGAACGCACCACCAAGGTCGAGCATGCCGGAAACGTCAAGGCCGCA
TTGGCCATGTGGGGAAAAACAGCCGAGGAAGATGCAAAGATACTCGCCAA
AAAGAAACAAGAGGAGGAAAGAGAACGAGTATTGCAGGAGAAGCTTCGGA
AAGAGCGTGAGGCCGAGGAGCTTGCAAGAGCTTACAACGCAGCCGTTCAA
GAGTTTGCTAAGATGACGCTCGCCGATATGGACGATGAGCCCAGCAAGGA
AATTGAACTCATCGCTTTTTTGGAGAGGAAAATCACTCTTGTCGAGCAAG
AAATCAAAAAACTGGAGGGCGAGCTCGCCGAGTTGGAAGCCGCTGAGTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1266802..1267701-

>Gchil9063.t1 ID=Gchil9063.t1|Name=Gchil9063.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00004370_pilon:1266802..1267701- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGTCGACGTCCTGCGCGACAACCTCGCCGACCGCGAGGCAAAGCT
CGACGTCCTTCGCAAAAAGGTCAAGCACGCAAAAGAACGTGCCGCGCGAC
CAAAATCAAAGGCCACCATCTCCAGCATCCAGCAACGTTACCTCTCCGCC
ATCGCCGACCTGGAGGACAAAGAAAAGGAACTTCCAAAGGCTCACGTTCG
TTCCACCGCAAACGCCGTGTCGTCTCTGGCGAGTCGCTGGAACCAAGGCA
TCGACGAGCGCAAGGTAGAAAAGACCAAAGTCCACGTCCGTGGCGACATC
ACCGCTGCCAAGAAGAATTTTGCATACAGTGATGCACCATCTGCAACCAA
AGCTGGTGCGCGCGCTTCCAGCGGCGCCGCTGACTCTGGCCCTTCTGAAA
TTGTCGTTGAAGATGGCTCTGACATTCCGAGCTGGGCAAAGAATCAACGC
AAGCTTGTCATCAAGAAGGAAAATGCCAGAAGTTCTGTGCGTGTCGATGT
CAAGGAGCTCCAAGGAAGTGTGCTTATGAACGCAGCCAGGGACGGTTCCG
AGGCTGAACGCACCACCAAGGTCGAGCATGCCGGAAACGTCAAGGCCGCA
TTGGCCATGTGGGGAAAAACAGCCGAGGAAGATGCAAAGATACTCGCCAA
AAAGAAACAAGAGGAGGAAAGAGAACGAGTATTGCAGGAGAAGCTTCGGA
AAGAGCGTGAGGCCGAGGAGCTTGCAAGAGCTTACAACGCAGCCGTTCAA
GAGTTTGCTAAGATGACGCTCGCCGATATGGACGATGAGCCCAGCAAGGA
AATTGAACTCATCGCTTTTTTGGAGAGGAAAATCACTCTTGTCGAGCAAG
AAATCAAAAAACTGGAGGGCGAGCTCGCCGAGTTGGAAGCCGCTGAGTGA
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