Gchil9054.t2 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9054.t2
Unique NameGchil9054.t2
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length431
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:1200731..1202023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9054Gchil9054Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 1200722..1202023 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9054.t2.start1Gchil9054.t2.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 1200731..1200733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9054.t2.CDS1Gchil9054.t2.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 1200731..1202023 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9054.t2.exon1Gchil9054.t2.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 1200731..1202023 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9054.t2.stop1Gchil9054.t2.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 1202021..1202023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9054.t2Gchil9054.t2Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 1200731..1202023 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9054.t2 ID=Gchil9054.t2|Name=Gchil9054.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=431bp
MVIRHALPRVAALSAVPTIRSITGVDVCPPRAELASTGCDEDGGGALRLG
KARISSVTDSDSRASSPRATPPHPDRLSNAPLRRRLPDLRAIPPGPSHSG
VGARHKDHKDDVVVDDDNDDNEDAGSTYSHASVLNLDDLEDDEHHVLATR
LQRYTQRLSRSRQWREWRGVRGGARNTRGAVVLARDEYQSHNCLEPLFER
AVHALVDAVDADALSASAAVASYRAFSPLYTNTERTVVSSLFRNASAQLR
REAPTPWRSPLVRETVRVQLPDGVDEALVRGVMYGAHVLPGAGAETILIR
LAAAYHREQLRKRYAKARRVMVPLSFAMTLTALLAALSRLECSMAFRRLR
SRAATRRVAEPHAVVAVRAKYDGARLAFDVSLHGDAPCTVLFRKPRLLPS
SKLADFNAIVAEVATVITDFGHVVSAAQLP*
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spliced messenger RNA

>Gchil9054.t2 ID=Gchil9054.t2|Name=Gchil9054.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00004370_pilon:1200731..1202023+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTATACGACATGCGTTGCCGCGTGTTGCCGCATTGTCTGCTGTGCC
TACCATTCGATCCATCACGGGCGTTGATGTGTGTCCGCCGCGCGCGGAGC
TTGCGTCGACAGGGTGCGACGAGGACGGCGGCGGTGCATTACGTTTGGGC
AAGGCGCGCATCTCGTCCGTGACGGACTCGGACTCGCGTGCGTCGTCGCC
GCGCGCCACGCCGCCGCACCCGGATCGTTTGTCAAACGCGCCGCTGCGTC
GTCGGCTGCCGGATTTGCGCGCAATACCGCCGGGTCCGTCGCACAGCGGC
GTTGGCGCACGCCACAAGgaccacaaggacgacgtcgtcgttgacgacga
caatgatgataacgaggacgCTGGCAGCACGTACAGCCACGCGTCCGTGC
TGAATCTGGACGATTTGGAAGACGATGAGCACCACGTGCTCGCCACTCGT
CTGCAACGCTACACGCAGCGGCTGTCGCGGTCGCGGCAGTGGCGTGAGTG
GCGTGGTGTGCGCGGCGGCGCACGTAACACGCGCGGCGCAGTGGTGCTGG
CACGCGACGAGTACCAGTCGCACAACTGTTTGGAACCGCTGTTTGAACGG
GCGGTACACGCTTTGGTGGATGCTGTGGACGCGGACGCGTTGTCGGCATC
AGCAGCTGTGGCGTCGTATCGAGCGTTTTCTCCGTTGTACACCAACACGG
AACGCACAGTGGTGAGCAGTCTGTTTCGCAACGCGTCGGCACAGTTACGA
CGTGAGGCGCCCACGCCGTGGCGCTCTCCGCTGGTGCGCGAGACGGTGCG
CGTACAACTTCCGGACGGTGTAGACGAAGCGTTGGTACGCGGGGTCATGT
ACGGGGCGCACGTACTGCCGGGGGCGGGCGCGGAAACGATCCTGATTCGA
CTGGCGGCCGCATATCATCGGGAACAACTGCGAAAGCGGTATGCAAAGGC
GCGACGCGTGATGGTTCCGCTTTCTTTCGCCATGACGCTGACGGCGTTGT
TGGCGGCTCTGTCGCGGCTCGAGTGCTCCATGGCGTTTCGTCGTCTGCGC
AGTCGCGCCGCCACTCGACGCGTGGCAGAGCCGCACGCTGTGGTGGCCGT
GAGGGCCAAATACGACGGCGCGCGTCTGGCGTTCGACGTCTCGCTGCACG
GCGACGCGCCGTGCACCGTACTGTTCCGAAAGCCGCGGCTGCTACCGTCT
AGCAAACTGGCCGACTTCAACGCCATCGTCGCCGAGGTTGCCACCGTCAT
CACCGACTTTGGGCATGTCGTCAGCGCCGCGCAGCTGCCGTGA
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protein sequence of Gchil9054.t2

>Gchil9054.t2 ID=Gchil9054.t2|Name=Gchil9054.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=431bp
MVIRHALPRVAALSAVPTIRSITGVDVCPPRAELASTGCDEDGGGALRLG
KARISSVTDSDSRASSPRATPPHPDRLSNAPLRRRLPDLRAIPPGPSHSG
VGARHKDHKDDVVVDDDNDDNEDAGSTYSHASVLNLDDLEDDEHHVLATR
LQRYTQRLSRSRQWREWRGVRGGARNTRGAVVLARDEYQSHNCLEPLFER
AVHALVDAVDADALSASAAVASYRAFSPLYTNTERTVVSSLFRNASAQLR
REAPTPWRSPLVRETVRVQLPDGVDEALVRGVMYGAHVLPGAGAETILIR
LAAAYHREQLRKRYAKARRVMVPLSFAMTLTALLAALSRLECSMAFRRLR
SRAATRRVAEPHAVVAVRAKYDGARLAFDVSLHGDAPCTVLFRKPRLLPS
SKLADFNAIVAEVATVITDFGHVVSAAQLP*
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mRNA from alignment at tig00004370_pilon:1200731..1202023+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9054.t2 ID=Gchil9054.t2|Name=Gchil9054.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00004370_pilon:1200731..1202023+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATACGACATGCGTTGCCGCGTGTTGCCGCATTGTCTGCTGTGCC
TACCATTCGATCCATCACGGGCGTTGATGTGTGTCCGCCGCGCGCGGAGC
TTGCGTCGACAGGGTGCGACGAGGACGGCGGCGGTGCATTACGTTTGGGC
AAGGCGCGCATCTCGTCCGTGACGGACTCGGACTCGCGTGCGTCGTCGCC
GCGCGCCACGCCGCCGCACCCGGATCGTTTGTCAAACGCGCCGCTGCGTC
GTCGGCTGCCGGATTTGCGCGCAATACCGCCGGGTCCGTCGCACAGCGGC
GTTGGCGCACGCCACAAGgaccacaaggacgacgtcgtcgttgacgacga
caatgatgataacgaggacgCTGGCAGCACGTACAGCCACGCGTCCGTGC
TGAATCTGGACGATTTGGAAGACGATGAGCACCACGTGCTCGCCACTCGT
CTGCAACGCTACACGCAGCGGCTGTCGCGGTCGCGGCAGTGGCGTGAGTG
GCGTGGTGTGCGCGGCGGCGCACGTAACACGCGCGGCGCAGTGGTGCTGG
CACGCGACGAGTACCAGTCGCACAACTGTTTGGAACCGCTGTTTGAACGG
GCGGTACACGCTTTGGTGGATGCTGTGGACGCGGACGCGTTGTCGGCATC
AGCAGCTGTGGCGTCGTATCGAGCGTTTTCTCCGTTGTACACCAACACGG
AACGCACAGTGGTGAGCAGTCTGTTTCGCAACGCGTCGGCACAGTTACGA
CGTGAGGCGCCCACGCCGTGGCGCTCTCCGCTGGTGCGCGAGACGGTGCG
CGTACAACTTCCGGACGGTGTAGACGAAGCGTTGGTACGCGGGGTCATGT
ACGGGGCGCACGTACTGCCGGGGGCGGGCGCGGAAACGATCCTGATTCGA
CTGGCGGCCGCATATCATCGGGAACAACTGCGAAAGCGGTATGCAAAGGC
GCGACGCGTGATGGTTCCGCTTTCTTTCGCCATGACGCTGACGGCGTTGT
TGGCGGCTCTGTCGCGGCTCGAGTGCTCCATGGCGTTTCGTCGTCTGCGC
AGTCGCGCCGCCACTCGACGCGTGGCAGAGCCGCACGCTGTGGTGGCCGT
GAGGGCCAAATACGACGGCGCGCGTCTGGCGTTCGACGTCTCGCTGCACG
GCGACGCGCCGTGCACCGTACTGTTCCGAAAGCCGCGGCTGCTACCGTCT
AGCAAACTGGCCGACTTCAACGCCATCGTCGCCGAGGTTGCCACCGTCAT
CACCGACTTTGGGCATGTCGTCAGCGCCGCGCAGCTGCCGTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:1200731..1202023+

>Gchil9054.t2 ID=Gchil9054.t2|Name=Gchil9054.t2|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1293bp|location=Sequence derived from alignment at tig00004370_pilon:1200731..1202023+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTATACGACATGCGTTGCCGCGTGTTGCCGCATTGTCTGCTGTGCC
TACCATTCGATCCATCACGGGCGTTGATGTGTGTCCGCCGCGCGCGGAGC
TTGCGTCGACAGGGTGCGACGAGGACGGCGGCGGTGCATTACGTTTGGGC
AAGGCGCGCATCTCGTCCGTGACGGACTCGGACTCGCGTGCGTCGTCGCC
GCGCGCCACGCCGCCGCACCCGGATCGTTTGTCAAACGCGCCGCTGCGTC
GTCGGCTGCCGGATTTGCGCGCAATACCGCCGGGTCCGTCGCACAGCGGC
GTTGGCGCACGCCACAAGgaccacaaggacgacgtcgtcgttgacgacga
caatgatgataacgaggacgCTGGCAGCACGTACAGCCACGCGTCCGTGC
TGAATCTGGACGATTTGGAAGACGATGAGCACCACGTGCTCGCCACTCGT
CTGCAACGCTACACGCAGCGGCTGTCGCGGTCGCGGCAGTGGCGTGAGTG
GCGTGGTGTGCGCGGCGGCGCACGTAACACGCGCGGCGCAGTGGTGCTGG
CACGCGACGAGTACCAGTCGCACAACTGTTTGGAACCGCTGTTTGAACGG
GCGGTACACGCTTTGGTGGATGCTGTGGACGCGGACGCGTTGTCGGCATC
AGCAGCTGTGGCGTCGTATCGAGCGTTTTCTCCGTTGTACACCAACACGG
AACGCACAGTGGTGAGCAGTCTGTTTCGCAACGCGTCGGCACAGTTACGA
CGTGAGGCGCCCACGCCGTGGCGCTCTCCGCTGGTGCGCGAGACGGTGCG
CGTACAACTTCCGGACGGTGTAGACGAAGCGTTGGTACGCGGGGTCATGT
ACGGGGCGCACGTACTGCCGGGGGCGGGCGCGGAAACGATCCTGATTCGA
CTGGCGGCCGCATATCATCGGGAACAACTGCGAAAGCGGTATGCAAAGGC
GCGACGCGTGATGGTTCCGCTTTCTTTCGCCATGACGCTGACGGCGTTGT
TGGCGGCTCTGTCGCGGCTCGAGTGCTCCATGGCGTTTCGTCGTCTGCGC
AGTCGCGCCGCCACTCGACGCGTGGCAGAGCCGCACGCTGTGGTGGCCGT
GAGGGCCAAATACGACGGCGCGCGTCTGGCGTTCGACGTCTCGCTGCACG
GCGACGCGCCGTGCACCGTACTGTTCCGAAAGCCGCGGCTGCTACCGTCT
AGCAAACTGGCCGACTTCAACGCCATCGTCGCCGAGGTTGCCACCGTCAT
CACCGACTTTGGGCATGTCGTCAGCGCCGCGCAGCTGCCGTGA
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