Gchil9001.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil9001.t1
Unique NameGchil9001.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length460
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:916625..918004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2340.JV46_28950
PFAMsRVT_1
Max annot lvl1224|Proteobacteria
Evalue1.42e-08
EggNOG OGs2DY5I@1|root,3488J@2|Bacteria,1P3B4@1224|Proteobacteria
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9001Gchil9001Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 916625..918004 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9001.t1.stop1Gchil9001.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 916625..916627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9001.t1.CDS1Gchil9001.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 916625..918004 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9001.t1.exon1Gchil9001.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 916625..918004 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9001.t1.start1Gchil9001.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 918002..918004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil9001.t1Gchil9001.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 916625..918004 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil9001.t1 ID=Gchil9001.t1|Name=Gchil9001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=460bp
MFKDSLSPIALAVKKESLTRIRKSRSTFKKAAEHQLATCGLLMLPREPWP
VPIVIHNSESICFHYTSCTKKDNIDFQRQQALSMLRSLRKADCEIWSDGS
VGRPNWLEIKKPLRAAVEWNEGWYTGYIEYLRKSGNYSKTVQNFYKKHGR
LPDISIHYDDGFVMAYSISENHRNLVDADGHELSCKTLEITEVGGSAFAI
WWNDDKEPQKGMFPAGVETCSFFTEIKALKKALQVVLIRVREGWIGNIRI
VTDSHSILDNLRGVARHQSYSLQQVSISLSEIGKYCTVDMVWIPSHCGIP
RNDMVDNLAKEALNISMQDQVAVPVDFADVKRRVITKEKKSPLIENIPEG
LENIVSLREANVALSQLVVGHTPCLHRLGSYLQKKRLYCTCRPGVLNDVD
HYVLRCPSRTMSRRICLPPVQERQGLAVDEIIKKWPEKMLVFLVRERFFD
KERSALRRN*
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spliced messenger RNA

>Gchil9001.t1 ID=Gchil9001.t1|Name=Gchil9001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00004370_pilon:916625..918004- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTAAGGATAGTTTATCACCGATCGCTCTGGCTGTGAAGAAAGAGTC
GTTAACTCGCATTCGAAAATCAAGAAGTACTTTCAAAAAGGCAGCCGAAC
ATCAACTGGCTACTTGCGGGCTACTTATGCTACCAAGAGAACCATGGCCT
GTACCGATCGTGATTCACAATTCCGAAAGTATTTGCTTTCACTACACCAG
CTGCACAAAGAAAGATAATATCGATTTTCAACGTCAGCAAGCTTTAAGTA
TGCTACGAAGCTTGCGGAAAGCAGACTGTGAAATATGGAGCGATGGTTCT
GTTGGGCGCCCAAATTGGCTTGAAATCAAGAAACCATTACGAGCAGCTGT
CGAATGGAATGAGGGATGGTACACAGGGTATATAGAATACTTACGGAAAA
GTGGTAACTACTCAAAAACAGTACAGAACTTTTACAAGAAACACGGAAGG
TTACCGGATATTTCGATTCATTACGACGACGGGTTCGTTATGGCCTATTC
TATATCTGAAAACCACCGAAATCTTGTTGATGCAGATGGACACGAACTAA
GCTGTAAAACTCTAGAAATTACTGAAGTAGGAGGGAGTGCGTTTGCAATT
TGGTGGAACGATGATAAAGAACCGCAAAAAGGAATGTTCCCGGCAGGAGT
TGAAACGTGCTCCTTTTTTACTGAGATAAAGGCTTTGAAAAAAGCGTTGC
AAGTTGTTCTGATACGCGTTAGGGAGGGATGGATTGGAAATATAAGAATT
GTTACCGACTCTCACAGCATATTGGATAATCTCAGAGGAGTTGCCCGACA
TCAATCGTATTCTCTACAGCAAGTATCTATCAGCCTTTCTGAAATTGGAA
AGTACTGTACCGTTGATATGGTTTGGATTCCAAGCCATTGTGGTATCCCT
CGAAATGATATGGTGGATAACCTAGCAAAAGAAGCTCTGAATATTTCTAT
GCAAGATCAAGTCGCCGTTCCAGTTGATTTTGCGGATGTGAAGAGAAGAG
TCATAACGAAGGAAAAGAAGTCCCCATTAATAGAAAACATTCCAGAAGGA
CTGGAAAACATTGTTTCTCTACGAGAGGCAAACGTCGCTTTATCGCAACT
TGTAGTTGGTCACACACCGTGCTTGCATCGATTGGGGTCGTACTTACAGA
AGAAAAGGCTCTATTGTACCTGTAGGCCGGGGGTGCTCAATGATGTAGAT
CATTATGTCTTAAGATGCCCGTCGAGAACTATGTCAAGAAGAATATGTTT
GCCCCCTGTGCAAGAACGTCAAGGCCTAGCGGTAGACGAAATCATCAAGA
AGTGGCCAGAAAAAATGCTGGTCTTCCTAGTGAGGGAACGTTTTTTTGAC
AAAGAACGCTCTGCACTACGTAGGAATTAG
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protein sequence of Gchil9001.t1

>Gchil9001.t1 ID=Gchil9001.t1|Name=Gchil9001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=460bp
MFKDSLSPIALAVKKESLTRIRKSRSTFKKAAEHQLATCGLLMLPREPWP
VPIVIHNSESICFHYTSCTKKDNIDFQRQQALSMLRSLRKADCEIWSDGS
VGRPNWLEIKKPLRAAVEWNEGWYTGYIEYLRKSGNYSKTVQNFYKKHGR
LPDISIHYDDGFVMAYSISENHRNLVDADGHELSCKTLEITEVGGSAFAI
WWNDDKEPQKGMFPAGVETCSFFTEIKALKKALQVVLIRVREGWIGNIRI
VTDSHSILDNLRGVARHQSYSLQQVSISLSEIGKYCTVDMVWIPSHCGIP
RNDMVDNLAKEALNISMQDQVAVPVDFADVKRRVITKEKKSPLIENIPEG
LENIVSLREANVALSQLVVGHTPCLHRLGSYLQKKRLYCTCRPGVLNDVD
HYVLRCPSRTMSRRICLPPVQERQGLAVDEIIKKWPEKMLVFLVRERFFD
KERSALRRN*
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mRNA from alignment at tig00004370_pilon:916625..918004-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil9001.t1 ID=Gchil9001.t1|Name=Gchil9001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1380bp|location=Sequence derived from alignment at tig00004370_pilon:916625..918004- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTAAGGATAGTTTATCACCGATCGCTCTGGCTGTGAAGAAAGAGTC
GTTAACTCGCATTCGAAAATCAAGAAGTACTTTCAAAAAGGCAGCCGAAC
ATCAACTGGCTACTTGCGGGCTACTTATGCTACCAAGAGAACCATGGCCT
GTACCGATCGTGATTCACAATTCCGAAAGTATTTGCTTTCACTACACCAG
CTGCACAAAGAAAGATAATATCGATTTTCAACGTCAGCAAGCTTTAAGTA
TGCTACGAAGCTTGCGGAAAGCAGACTGTGAAATATGGAGCGATGGTTCT
GTTGGGCGCCCAAATTGGCTTGAAATCAAGAAACCATTACGAGCAGCTGT
CGAATGGAATGAGGGATGGTACACAGGGTATATAGAATACTTACGGAAAA
GTGGTAACTACTCAAAAACAGTACAGAACTTTTACAAGAAACACGGAAGG
TTACCGGATATTTCGATTCATTACGACGACGGGTTCGTTATGGCCTATTC
TATATCTGAAAACCACCGAAATCTTGTTGATGCAGATGGACACGAACTAA
GCTGTAAAACTCTAGAAATTACTGAAGTAGGAGGGAGTGCGTTTGCAATT
TGGTGGAACGATGATAAAGAACCGCAAAAAGGAATGTTCCCGGCAGGAGT
TGAAACGTGCTCCTTTTTTACTGAGATAAAGGCTTTGAAAAAAGCGTTGC
AAGTTGTTCTGATACGCGTTAGGGAGGGATGGATTGGAAATATAAGAATT
GTTACCGACTCTCACAGCATATTGGATAATCTCAGAGGAGTTGCCCGACA
TCAATCGTATTCTCTACAGCAAGTATCTATCAGCCTTTCTGAAATTGGAA
AGTACTGTACCGTTGATATGGTTTGGATTCCAAGCCATTGTGGTATCCCT
CGAAATGATATGGTGGATAACCTAGCAAAAGAAGCTCTGAATATTTCTAT
GCAAGATCAAGTCGCCGTTCCAGTTGATTTTGCGGATGTGAAGAGAAGAG
TCATAACGAAGGAAAAGAAGTCCCCATTAATAGAAAACATTCCAGAAGGA
CTGGAAAACATTGTTTCTCTACGAGAGGCAAACGTCGCTTTATCGCAACT
TGTAGTTGGTCACACACCGTGCTTGCATCGATTGGGGTCGTACTTACAGA
AGAAAAGGCTCTATTGTACCTGTAGGCCGGGGGTGCTCAATGATGTAGAT
CATTATGTCTTAAGATGCCCGTCGAGAACTATGTCAAGAAGAATATGTTT
GCCCCCTGTGCAAGAACGTCAAGGCCTAGCGGTAGACGAAATCATCAAGA
AGTGGCCAGAAAAAATGCTGGTCTTCCTAGTGAGGGAACGTTTTTTTGAC
AAAGAACGCTCTGCACTACGTAGGAATTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:916625..918004-

>Gchil9001.t1 ID=Gchil9001.t1|Name=Gchil9001.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1380bp|location=Sequence derived from alignment at tig00004370_pilon:916625..918004- (Gracilaria chilensis NLEC103_M9 male)
ATGTTTAAGGATAGTTTATCACCGATCGCTCTGGCTGTGAAGAAAGAGTC
GTTAACTCGCATTCGAAAATCAAGAAGTACTTTCAAAAAGGCAGCCGAAC
ATCAACTGGCTACTTGCGGGCTACTTATGCTACCAAGAGAACCATGGCCT
GTACCGATCGTGATTCACAATTCCGAAAGTATTTGCTTTCACTACACCAG
CTGCACAAAGAAAGATAATATCGATTTTCAACGTCAGCAAGCTTTAAGTA
TGCTACGAAGCTTGCGGAAAGCAGACTGTGAAATATGGAGCGATGGTTCT
GTTGGGCGCCCAAATTGGCTTGAAATCAAGAAACCATTACGAGCAGCTGT
CGAATGGAATGAGGGATGGTACACAGGGTATATAGAATACTTACGGAAAA
GTGGTAACTACTCAAAAACAGTACAGAACTTTTACAAGAAACACGGAAGG
TTACCGGATATTTCGATTCATTACGACGACGGGTTCGTTATGGCCTATTC
TATATCTGAAAACCACCGAAATCTTGTTGATGCAGATGGACACGAACTAA
GCTGTAAAACTCTAGAAATTACTGAAGTAGGAGGGAGTGCGTTTGCAATT
TGGTGGAACGATGATAAAGAACCGCAAAAAGGAATGTTCCCGGCAGGAGT
TGAAACGTGCTCCTTTTTTACTGAGATAAAGGCTTTGAAAAAAGCGTTGC
AAGTTGTTCTGATACGCGTTAGGGAGGGATGGATTGGAAATATAAGAATT
GTTACCGACTCTCACAGCATATTGGATAATCTCAGAGGAGTTGCCCGACA
TCAATCGTATTCTCTACAGCAAGTATCTATCAGCCTTTCTGAAATTGGAA
AGTACTGTACCGTTGATATGGTTTGGATTCCAAGCCATTGTGGTATCCCT
CGAAATGATATGGTGGATAACCTAGCAAAAGAAGCTCTGAATATTTCTAT
GCAAGATCAAGTCGCCGTTCCAGTTGATTTTGCGGATGTGAAGAGAAGAG
TCATAACGAAGGAAAAGAAGTCCCCATTAATAGAAAACATTCCAGAAGGA
CTGGAAAACATTGTTTCTCTACGAGAGGCAAACGTCGCTTTATCGCAACT
TGTAGTTGGTCACACACCGTGCTTGCATCGATTGGGGTCGTACTTACAGA
AGAAAAGGCTCTATTGTACCTGTAGGCCGGGGGTGCTCAATGATGTAGAT
CATTATGTCTTAAGATGCCCGTCGAGAACTATGTCAAGAAGAATATGTTT
GCCCCCTGTGCAAGAACGTCAAGGCCTAGCGGTAGACGAAATCATCAAGA
AGTGGCCAGAAAAAATGCTGGTCTTCCTAGTGAGGGAACGTTTTTTTGAC
AAAGAACGCTCTGCACTACGTAGGAATTAG
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