Gchil8999.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8999.t1
Unique Name	Gchil8999.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	619

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:910305..912161 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8999	Gchil8999	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 910305..912161 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8999.t1.start1	Gchil8999.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 910305..910307 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8999.t1.CDS1	Gchil8999.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 910305..912161 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8999.t1.exon1	Gchil8999.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 910305..912161 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8999.t1.stop1	Gchil8999.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 912159..912161 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8999.t1	Gchil8999.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 910305..912161 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:910305..912161+
coding sequence from alignment at tig00004370_pilon:910305..912161+

mRNA sequence

>Gchil8999.t1 ID=Gchil8999.t1|Name=Gchil8999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=619bp
MSNGMSGTQPPKPALFSKRRRRVQKRRRVLPHFDTPDLIVSPDQPSITPN
SATVFSCDAAGHSPASSAHDPARVRPYSLRVKPRMQTRLKQAPLVPGYDP
HSHSDDATEHQISYTQDQLRQLKKKLRIAPQSHPLQPATARKPYTSTNEQ
SAIQPHIRQPTISGDVKSEQNASSAQRLRSSLAQSSRPTELKQKSAASTA
APFSLEWNAQVYDDDDIQIEPLSNFSSGEVHGNDSESADGEWEAQLIRRA
VQKTTLPNQFMFRRELNMIQDAEIKGMQSGAFIKLKLDIAKRIEELAGQQ
AYMEQTIGRLGQVARQDTKMDRNANVSVKNLRQKVAFYEHLVQQISNVSR
CVAASIEVFEQWESFVDGKMAERINQVIVRLKGGIDQFRRERNALVLDIE
EVRCNCREWGGRLVENVQKEVVELRDQLGFKQIIRSIMDWVERFPEDYKS
AFADSSSGRLLGRLALLENDIGFIQEFGKREEMTKAVITSFGVERFASWI
KARWEPRVSESCEFVGDLMRSMNAVPSAKGVVRSALQARLELEIEALEAF
SDEGIRYVVRGLVIIAKKALFDPGLVRGIHACERICGLKGFEEELAWMAD
CSFLHEAAEKFRQWLSAL*

spliced messenger RNA

>Gchil8999.t1 ID=Gchil8999.t1|Name=Gchil8999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at tig00004370_pilon:910305..912161+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAATGGAATGTCGGGAACTCAGCCACCCAAGCCCGCGCTCTTTTC
GAAACGCAGACGCAGAGTCCAAAAGAGACGTCGCGTGCTTCCACACTTTG
ATACCCCCGACCTGATTGTATCACCAGATCAACCTTCAATAACTCCTAAC
TCAGCCACCGTCTTTTCTTGCGATGCGGCAGGGCATTCTCCTGCTTCATC
CGCCCATGACCCCGCCCGTGTTCGTCCATATTCGCTTCGAGTGAAACCGC
GTATGCAGACGAGACTCAAGCAAGCGCCGCTTGTACCCGGCTATGACCCA
CACTCGCACTCGGATGATGCCACCGAGCATCAAATTTCTTACACACAAGA
TCAACTCAGGCAGCTCAAGAAAAAGCTCCGTATTGCTCCTCAGTCACACC
CACTACAACCTGCCACTGCGCGAAAACCATATACTTCCACAAACGAGCAG
TCTGCCATTCAACCCCACATCCGCCAACCTACAATCTCTGGTGACGTCAA
GAGTGAACAAAACGCTTCCTCAGCCCAGCGACTCCGCTCCTCTTTGGCTC
AATCTTCACGACCGACAGAATTGAAGCAAAAGTCCGCCGCTTCCACAGCT
GCTCCATTCTCCTTGGAATGGAACGCTCAAGTATACGACGACGACGATAT
CCAAATCGAACCTCTTTCTAACTTTTCCAGCGGAGAGGTTCATGGGAACG
ACAGTGAAAGCGCAGACGGCGAATGGGAGGCACAGCTCATACGCCGTGCT
GTGCAGAAGACAACCCTGCCAAATCAGTTTATGTTCAGGCGCGAATTGAA
TATGATTCAAGATGCCGAGATCAAAGGCATGCAATCAGGAGCGTTCATAA
AGCTCAAACTCGACATTGCAAAACGCATTGAAGAACTAGCGGGGCAGCAA
GCTTACATGGAACAGACCATCGGGCGATTGGGACAAGTAGCAAGGCAAGA
CACAAAAATGGATAGAAATGCGAACGTTTCCGTTAAAAACTTGCGGCAGA
AAGTCGCATTCTATGAGCACCTTGTCCAGCAAATTTCGAACGTGTCGAGA
TGTGTCGCAGCTTCTATCGAGGTTTTTGAACAATGGGAGAGTTTTGTAGA
TGGTAAAATGGCAGAGAGGATAAATCAAGTTATCGTGCGTCTGAAGGGTG
GAATTGATCAATTTAGGCGTGAGAGAAATGCACTGGTGTTAGATATCGAA
GAGGTGCGTTGCAATTGCCGAGAATGGGGTGGTCGCCTTGTTGAAAACGT
ACAGAAAGAAGTGGTCGAGCTTCGTGACCAGCTAGGCTTCAAGCAGATCA
TTAGATCGATTATGGATTGGGTTGAGCGCTTTCCTGAAGATTACAAGTCA
GCTTTCGCCGACTCTTCATCGGGTAGGTTATTGGGAAGATTAGCATTATT
GGAAAATGACATTGGCTTCATCCAAGAGTTCGGGAAAAGAGAAGAGATGA
CGAAGGCTGTAATCACCTCGTTCGGGGTTGAACGCTTTGCAAGCTGGATC
AAAGCACGTTGGGAACCTAGAGTGTCTGAAAGCTGTGAGTTCGTCGGTGA
TTTGATGCGATCTATGAACGCAGTCCCATCTGCAAAGGGAGTTGTTCGTA
GCGCGCTGCAAGCACGGCTTGAGTTGGAAATTGAAGCTCTTGAAGCTTTT
AGCGATGAAGGAATTAGATACGTCGTACGAGGTTTAGTGATAATTGCAAA
GAAAGCCCTGTTTGATCCAGGTCTTGTTCGGGGTATTCATGCTTGTGAGC
GAATTTGCGGATTGAAAGGATTTGAGGAAGAACTTGCATGGATGGCAGAT
TGTTCGTTCTTACATGAAGCTGCTGAAAAGTTTCGCCAATGGCTTAGTGC
ATTGTGA

protein sequence of Gchil8999.t1

>Gchil8999.t1 ID=Gchil8999.t1|Name=Gchil8999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=619bp
MSNGMSGTQPPKPALFSKRRRRVQKRRRVLPHFDTPDLIVSPDQPSITPN
SATVFSCDAAGHSPASSAHDPARVRPYSLRVKPRMQTRLKQAPLVPGYDP
HSHSDDATEHQISYTQDQLRQLKKKLRIAPQSHPLQPATARKPYTSTNEQ
SAIQPHIRQPTISGDVKSEQNASSAQRLRSSLAQSSRPTELKQKSAASTA
APFSLEWNAQVYDDDDIQIEPLSNFSSGEVHGNDSESADGEWEAQLIRRA
VQKTTLPNQFMFRRELNMIQDAEIKGMQSGAFIKLKLDIAKRIEELAGQQ
AYMEQTIGRLGQVARQDTKMDRNANVSVKNLRQKVAFYEHLVQQISNVSR
CVAASIEVFEQWESFVDGKMAERINQVIVRLKGGIDQFRRERNALVLDIE
EVRCNCREWGGRLVENVQKEVVELRDQLGFKQIIRSIMDWVERFPEDYKS
AFADSSSGRLLGRLALLENDIGFIQEFGKREEMTKAVITSFGVERFASWI
KARWEPRVSESCEFVGDLMRSMNAVPSAKGVVRSALQARLELEIEALEAF
SDEGIRYVVRGLVIIAKKALFDPGLVRGIHACERICGLKGFEEELAWMAD
CSFLHEAAEKFRQWLSAL*

mRNA from alignment at tig00004370_pilon:910305..912161+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8999.t1 ID=Gchil8999.t1|Name=Gchil8999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1857bp|location=Sequence derived from alignment at tig00004370_pilon:910305..912161+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGAATGGAATGTCGGGAACTCAGCCACCCAAGCCCGCGCTCTTTTC
GAAACGCAGACGCAGAGTCCAAAAGAGACGTCGCGTGCTTCCACACTTTG
ATACCCCCGACCTGATTGTATCACCAGATCAACCTTCAATAACTCCTAAC
TCAGCCACCGTCTTTTCTTGCGATGCGGCAGGGCATTCTCCTGCTTCATC
CGCCCATGACCCCGCCCGTGTTCGTCCATATTCGCTTCGAGTGAAACCGC
GTATGCAGACGAGACTCAAGCAAGCGCCGCTTGTACCCGGCTATGACCCA
CACTCGCACTCGGATGATGCCACCGAGCATCAAATTTCTTACACACAAGA
TCAACTCAGGCAGCTCAAGAAAAAGCTCCGTATTGCTCCTCAGTCACACC
CACTACAACCTGCCACTGCGCGAAAACCATATACTTCCACAAACGAGCAG
TCTGCCATTCAACCCCACATCCGCCAACCTACAATCTCTGGTGACGTCAA
GAGTGAACAAAACGCTTCCTCAGCCCAGCGACTCCGCTCCTCTTTGGCTC
AATCTTCACGACCGACAGAATTGAAGCAAAAGTCCGCCGCTTCCACAGCT
GCTCCATTCTCCTTGGAATGGAACGCTCAAGTATACGACGACGACGATAT
CCAAATCGAACCTCTTTCTAACTTTTCCAGCGGAGAGGTTCATGGGAACG
ACAGTGAAAGCGCAGACGGCGAATGGGAGGCACAGCTCATACGCCGTGCT
GTGCAGAAGACAACCCTGCCAAATCAGTTTATGTTCAGGCGCGAATTGAA
TATGATTCAAGATGCCGAGATCAAAGGCATGCAATCAGGAGCGTTCATAA
AGCTCAAACTCGACATTGCAAAACGCATTGAAGAACTAGCGGGGCAGCAA
GCTTACATGGAACAGACCATCGGGCGATTGGGACAAGTAGCAAGGCAAGA
CACAAAAATGGATAGAAATGCGAACGTTTCCGTTAAAAACTTGCGGCAGA
AAGTCGCATTCTATGAGCACCTTGTCCAGCAAATTTCGAACGTGTCGAGA
TGTGTCGCAGCTTCTATCGAGGTTTTTGAACAATGGGAGAGTTTTGTAGA
TGGTAAAATGGCAGAGAGGATAAATCAAGTTATCGTGCGTCTGAAGGGTG
GAATTGATCAATTTAGGCGTGAGAGAAATGCACTGGTGTTAGATATCGAA
GAGGTGCGTTGCAATTGCCGAGAATGGGGTGGTCGCCTTGTTGAAAACGT
ACAGAAAGAAGTGGTCGAGCTTCGTGACCAGCTAGGCTTCAAGCAGATCA
TTAGATCGATTATGGATTGGGTTGAGCGCTTTCCTGAAGATTACAAGTCA
GCTTTCGCCGACTCTTCATCGGGTAGGTTATTGGGAAGATTAGCATTATT
GGAAAATGACATTGGCTTCATCCAAGAGTTCGGGAAAAGAGAAGAGATGA
CGAAGGCTGTAATCACCTCGTTCGGGGTTGAACGCTTTGCAAGCTGGATC
AAAGCACGTTGGGAACCTAGAGTGTCTGAAAGCTGTGAGTTCGTCGGTGA
TTTGATGCGATCTATGAACGCAGTCCCATCTGCAAAGGGAGTTGTTCGTA
GCGCGCTGCAAGCACGGCTTGAGTTGGAAATTGAAGCTCTTGAAGCTTTT
AGCGATGAAGGAATTAGATACGTCGTACGAGGTTTAGTGATAATTGCAAA
GAAAGCCCTGTTTGATCCAGGTCTTGTTCGGGGTATTCATGCTTGTGAGC
GAATTTGCGGATTGAAAGGATTTGAGGAAGAACTTGCATGGATGGCAGAT
TGTTCGTTCTTACATGAAGCTGCTGAAAAGTTTCGCCAATGGCTTAGTGC
ATTGTGA

Coding sequence (CDS) from alignment at tig00004370_pilon:910305..912161+

>Gchil8999.t1 ID=Gchil8999.t1|Name=Gchil8999.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1857bp|location=Sequence derived from alignment at tig00004370_pilon:910305..912161+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCGAATGGAATGTCGGGAACTCAGCCACCCAAGCCCGCGCTCTTTTC
GAAACGCAGACGCAGAGTCCAAAAGAGACGTCGCGTGCTTCCACACTTTG
ATACCCCCGACCTGATTGTATCACCAGATCAACCTTCAATAACTCCTAAC
TCAGCCACCGTCTTTTCTTGCGATGCGGCAGGGCATTCTCCTGCTTCATC
CGCCCATGACCCCGCCCGTGTTCGTCCATATTCGCTTCGAGTGAAACCGC
GTATGCAGACGAGACTCAAGCAAGCGCCGCTTGTACCCGGCTATGACCCA
CACTCGCACTCGGATGATGCCACCGAGCATCAAATTTCTTACACACAAGA
TCAACTCAGGCAGCTCAAGAAAAAGCTCCGTATTGCTCCTCAGTCACACC
CACTACAACCTGCCACTGCGCGAAAACCATATACTTCCACAAACGAGCAG
TCTGCCATTCAACCCCACATCCGCCAACCTACAATCTCTGGTGACGTCAA
GAGTGAACAAAACGCTTCCTCAGCCCAGCGACTCCGCTCCTCTTTGGCTC
AATCTTCACGACCGACAGAATTGAAGCAAAAGTCCGCCGCTTCCACAGCT
GCTCCATTCTCCTTGGAATGGAACGCTCAAGTATACGACGACGACGATAT
CCAAATCGAACCTCTTTCTAACTTTTCCAGCGGAGAGGTTCATGGGAACG
ACAGTGAAAGCGCAGACGGCGAATGGGAGGCACAGCTCATACGCCGTGCT
GTGCAGAAGACAACCCTGCCAAATCAGTTTATGTTCAGGCGCGAATTGAA
TATGATTCAAGATGCCGAGATCAAAGGCATGCAATCAGGAGCGTTCATAA
AGCTCAAACTCGACATTGCAAAACGCATTGAAGAACTAGCGGGGCAGCAA
GCTTACATGGAACAGACCATCGGGCGATTGGGACAAGTAGCAAGGCAAGA
CACAAAAATGGATAGAAATGCGAACGTTTCCGTTAAAAACTTGCGGCAGA
AAGTCGCATTCTATGAGCACCTTGTCCAGCAAATTTCGAACGTGTCGAGA
TGTGTCGCAGCTTCTATCGAGGTTTTTGAACAATGGGAGAGTTTTGTAGA
TGGTAAAATGGCAGAGAGGATAAATCAAGTTATCGTGCGTCTGAAGGGTG
GAATTGATCAATTTAGGCGTGAGAGAAATGCACTGGTGTTAGATATCGAA
GAGGTGCGTTGCAATTGCCGAGAATGGGGTGGTCGCCTTGTTGAAAACGT
ACAGAAAGAAGTGGTCGAGCTTCGTGACCAGCTAGGCTTCAAGCAGATCA
TTAGATCGATTATGGATTGGGTTGAGCGCTTTCCTGAAGATTACAAGTCA
GCTTTCGCCGACTCTTCATCGGGTAGGTTATTGGGAAGATTAGCATTATT
GGAAAATGACATTGGCTTCATCCAAGAGTTCGGGAAAAGAGAAGAGATGA
CGAAGGCTGTAATCACCTCGTTCGGGGTTGAACGCTTTGCAAGCTGGATC
AAAGCACGTTGGGAACCTAGAGTGTCTGAAAGCTGTGAGTTCGTCGGTGA
TTTGATGCGATCTATGAACGCAGTCCCATCTGCAAAGGGAGTTGTTCGTA
GCGCGCTGCAAGCACGGCTTGAGTTGGAAATTGAAGCTCTTGAAGCTTTT
AGCGATGAAGGAATTAGATACGTCGTACGAGGTTTAGTGATAATTGCAAA
GAAAGCCCTGTTTGATCCAGGTCTTGTTCGGGGTATTCATGCTTGTGAGC
GAATTTGCGGATTGAAAGGATTTGAGGAAGAACTTGCATGGATGGCAGAT
TGTTCGTTCTTACATGAAGCTGCTGAAAAGTTTCGCCAATGGCTTAGTGC
ATTGTGA