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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005706800.1 |
| Preferred name | LIG1 |
| PFAMs | DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00005 |
| KEGG ko | ko:K10747 |
| KEGG Reaction | R00381,R00382,R10822,R10823 |
| KEGG Pathway | ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 |
| GOs | GO:0000012,GO:0000228,GO:0000278,GO:0000302,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006297,GO:0006298,GO:0006302,GO:0006303,GO:0006304,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009636,GO:0009653,GO:0009987,GO:0010035,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032502,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035510,GO:0035753,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044728,GO:0044786,GO:0046483,GO:0046677,GO:0048856,GO:0050896,GO:0051103,GO:0051276,GO:0051716,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902969,GO:1903047,GO:1903461 |
| Evalue | 1.88e-215 |
| EggNOG OGs | COG1793@1|root,KOG0967@2759|Eukaryota |
| EC | 6.5.1.1,6.5.1.6,6.5.1.7 |
| Description | DNA ligase (ATP) activity |
| COG category | L |
| BRITE | ko00000,ko00001,ko01000,ko03032,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil8960.t1 ID=Gchil8960.t1|Name=Gchil8960.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=768bp MRKQRTLTAFFRPLSAQSSSSSSSAAPRKAPRKRPRAQPPSPPAPRKRPR TPTSAAHSPAPPHHPDPKPHPVESPQRDESPQRNESPMRDESPKPSKSPQ CHESPKRAESPTPAEKLKPERAAAGAHGKPVPYATLAHAFTNVEAITGRL HIQAVLCSLFRDIIATCPDDLVRTIYLCINRLAPAHHGIELGVGDGILLK SLSLVTGRSLSALKATYKKLGDLGDVAFHSRTTQKTMFPPPPLTVQKVFS ELQCIASVSGKNAQQQKQAIILKMLVAASKTEAKYLARALSGKLRIHLAD KTVIAALAAAVVLHHENVSDHFLLHTDGTKKTRLSEREQHVEQMVKDATA VLNAVYSRLPVWDIIIPNMLQFGAIDERLSDACQLLPGVPVSPMLAKPTK AISQVLERFAEVSFTCEYKYDGERAQIHRLTDGSMKIYSRNAENLTPKYP DLVRHLPTALRDKYKKSSFIIDAEAVAYDVQRKKILPFQELQSRKRKDVN AEDIKVKVCIFAFDLLYFDGNSLIEQPLNKRRSVLLDAFEQREGRFMFAK GQDSQDPEQIMELLNSSVKEGCEGLMVKALDGANSTYEPANRSQNWLKVK KDYLDGCGDSLDLVPIGGYRGRGKRSGAYGAFLLACYDGDNEEYQSVCKI GTGFSEVQLEEFGKFFNDEQQNRISEKEKSYYRTPSVSSLKPDVWFEPVQ VWEVKCADLSISPQHTAGIGRVAGDKGVALRFPRFVRVREDKAPEQATTA EQVVDMYLNQSAVADDG* back to topspliced messenger RNA >Gchil8960.t1 ID=Gchil8960.t1|Name=Gchil8960.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2304bp|location=Sequence derived from alignment at tig00004370_pilon:439404..441707- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGTAAGCAGCGAACGCTCACAGCCTTCTTCCGTCCGCTTTCCGCGCA GTCGTCGTCGTCCTCCTCCTCCGCGGCACCGCGGAAGGCACCGCGGAAGC GACCGCGCGCTCAGCCGCCATCGCCGCCCGCCCCGCGCAAGCGCCCGCGC ACCCCTACCTCCGCCGCCCACTCGCCTGCTCCTCCGCACCACCCCGACCC CAAACCCCATCCCGTCGAAAGCCCCCAGCGCGATGAAAGCCCCCAGCGCA ATGAAAGCCCCATGCGCGATGAAAGCCCCAAGCCCTCCAAAAGCCCCCAG TGCCATGAAAGCCCCAAGCGCGCTGAAAGCCCTACGCCCGCTGAAAAGCT AAAGCCCGAACGCGCCGCCGCTGGCGCCCACGGAAAGCCCGTGCCGTACG CCACGCTGGCGCACGCCTTCACCAACGTGGAGGCCATCACCGGTCGCCTG CACATCCAGGCCGTGTTGTGCTCTCTTTTCCGCGACATCATCGCAACATG TCCGGACGATCTCGTGCGCACCATCTACCTCTGCATCAATCGTCTGGCCC CGGCGCACCACGGAATTGAGCTCGGCGTGGGCGACGGCATCCTGCTTAAG AGTCTGTCCCTTGTCACCGGTCGTTCACTGTCGGCCCTCAAGGCCACGTA CAAGAAGTTGGGCGACTTAGGAGATGTGGCGTTTCACTCGAGAACCACGC AGAAAACCATGTTCCCGCCGCCGCCGCTCACCGTGCAAAAAGTGTTTTCC GAGCTCCAATGTATTGCCTCCGTGTCGGGGAAGAACGCACAGCAACAAAA GCAAGCTATTATTCTCAAGATGTTGGTGGCCGCCTCTAAGACTGAGGCCA AGTATCTTGCGCGCGCGTTGTCGGGAAAGTTGCGCATTCACCTGGCAGAC AAGACCGTCATCGCCGCTCTGGCCGCTGCCGTCGTACTGCACCATGAAAA TGTCTCCGATCACTTTTTGCTGCACACGGACGGAACCAAGAAGACCCGCC TGTCGGAACGAGAGCAGCACGTCGAACAGATGGTCAAGGACGCCACTGCC GTGCTTAATGCTGTCTATTCGCGACTGCCGGTGTGGGATATCATCATCCC CAACATGTTGCAGTTCGGCGCTATTGATGAGCGTCTCAGTGACGCCTGTC AGCTACTGCCGGGTGTGCCGGTATCGCCCATGCTTGCAAAGCCCACAAAG GCCATTTCTCAGGTGTTGGAGCGCTTTGCAGAGGTCTCCTTCACGTGTGA GTACAAGTATGACGGCGAACGCGCCCAGATTCATCGCCTCACCGACGGCT CCATGAAGATTTATAGCAGGAATGCGGAGAATTTGACGCCCAAGTACCCG GACTTGGTGCGACATTTGCCCACCGCGTTGCGCGACAAGTACAAGAAGTC CTCGTTCATCATTGACGCTGAGGCGGTTGCGTACGATGTGCAGCGAAAGA AGATTCTACCGTTTCAGGAGCTGCAAAGTCGAAAGCGAAAGGATGTGAAT GCGGAGGACATTAAGGTGAAGGTGTGTATCTTTGCGTTTGATTTGCTTTA CTTTGATGGAAACAGCCTGATAGAACAGCCGTTGAACAAGAGACGCAGCG TTCTGCTGGACGCTTTTGAACAACGGGAGGGCCGATTCATGTTTGCCAAG GGGCAGGATTCGCAGGATCCCGAGCAGATCATGGAGCTGCTCAACTCGAG CGTGAAGGAGGGGTGCGAGGGGTTGATGGTCAAGGCGTTGGATGGCGCTA ATTCCACGTATGAGCCGGCGAATCGCAGCCAGAACTGGCTCAAAGTGAAG AAGGATTATCTGGACGGGTGCGGAGACTCGCTGGACCTTGTGCCCATTGG CGGTTATCGGGGCCGCGGCAAGAGAAGCGGTGCGTACGGGGCGTTTCTGC TGGCGTGTTACGACGGCGACAACGAGGAGTACCAATCAGTGTGTAAGATT GGCACGGGCTTTTCAGAGGTGCAGCTGGAGGAGTTTGGCAAGTTCTTCAA CGATGAACAGCAGAATCGGATCAGTGAAAAGGAAAAATCGTACTATCGAA CGCCGAGTGTGAGTAGTTTGAAACCGGATGTGTGGTTTGAGCCTGTGCAG GTTTGGGAAGTGAAATGTGCGGACTTGTCCATTTCGCCGCAACATACGGC GGGTATTGGACGCGTTGCGGGCGATAAAGGGGTGGCGTTGCGGTTTCCAA GGTTTGTTCGTGTTAGGGAGGACAAGGCGCCGGAGCAGGCCACGACGGCG GAACAGGTGGTTGACATGTACTTGAATCAATCGGCGGTTGCGGATGATGG TTAA back to topprotein sequence of Gchil8960.t1 >Gchil8960.t1 ID=Gchil8960.t1|Name=Gchil8960.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=768bp
MRKQRTLTAFFRPLSAQSSSSSSSAAPRKAPRKRPRAQPPSPPAPRKRPR TPTSAAHSPAPPHHPDPKPHPVESPQRDESPQRNESPMRDESPKPSKSPQ CHESPKRAESPTPAEKLKPERAAAGAHGKPVPYATLAHAFTNVEAITGRL HIQAVLCSLFRDIIATCPDDLVRTIYLCINRLAPAHHGIELGVGDGILLK SLSLVTGRSLSALKATYKKLGDLGDVAFHSRTTQKTMFPPPPLTVQKVFS ELQCIASVSGKNAQQQKQAIILKMLVAASKTEAKYLARALSGKLRIHLAD KTVIAALAAAVVLHHENVSDHFLLHTDGTKKTRLSEREQHVEQMVKDATA VLNAVYSRLPVWDIIIPNMLQFGAIDERLSDACQLLPGVPVSPMLAKPTK AISQVLERFAEVSFTCEYKYDGERAQIHRLTDGSMKIYSRNAENLTPKYP DLVRHLPTALRDKYKKSSFIIDAEAVAYDVQRKKILPFQELQSRKRKDVN AEDIKVKVCIFAFDLLYFDGNSLIEQPLNKRRSVLLDAFEQREGRFMFAK GQDSQDPEQIMELLNSSVKEGCEGLMVKALDGANSTYEPANRSQNWLKVK KDYLDGCGDSLDLVPIGGYRGRGKRSGAYGAFLLACYDGDNEEYQSVCKI GTGFSEVQLEEFGKFFNDEQQNRISEKEKSYYRTPSVSSLKPDVWFEPVQ VWEVKCADLSISPQHTAGIGRVAGDKGVALRFPRFVRVREDKAPEQATTA EQVVDMYLNQSAVADDG* back to topmRNA from alignment at tig00004370_pilon:439404..441707- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil8960.t1 ID=Gchil8960.t1|Name=Gchil8960.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2304bp|location=Sequence derived from alignment at tig00004370_pilon:439404..441707- (Gracilaria chilensis NLEC103_M9 male) ATGCGTAAGCAGCGAACGCTCACAGCCTTCTTCCGTCCGCTTTCCGCGCA
GTCGTCGTCGTCCTCCTCCTCCGCGGCACCGCGGAAGGCACCGCGGAAGC
GACCGCGCGCTCAGCCGCCATCGCCGCCCGCCCCGCGCAAGCGCCCGCGC
ACCCCTACCTCCGCCGCCCACTCGCCTGCTCCTCCGCACCACCCCGACCC
CAAACCCCATCCCGTCGAAAGCCCCCAGCGCGATGAAAGCCCCCAGCGCA
ATGAAAGCCCCATGCGCGATGAAAGCCCCAAGCCCTCCAAAAGCCCCCAG
TGCCATGAAAGCCCCAAGCGCGCTGAAAGCCCTACGCCCGCTGAAAAGCT
AAAGCCCGAACGCGCCGCCGCTGGCGCCCACGGAAAGCCCGTGCCGTACG
CCACGCTGGCGCACGCCTTCACCAACGTGGAGGCCATCACCGGTCGCCTG
CACATCCAGGCCGTGTTGTGCTCTCTTTTCCGCGACATCATCGCAACATG
TCCGGACGATCTCGTGCGCACCATCTACCTCTGCATCAATCGTCTGGCCC
CGGCGCACCACGGAATTGAGCTCGGCGTGGGCGACGGCATCCTGCTTAAG
AGTCTGTCCCTTGTCACCGGTCGTTCACTGTCGGCCCTCAAGGCCACGTA
CAAGAAGTTGGGCGACTTAGGAGATGTGGCGTTTCACTCGAGAACCACGC
AGAAAACCATGTTCCCGCCGCCGCCGCTCACCGTGCAAAAAGTGTTTTCC
GAGCTCCAATGTATTGCCTCCGTGTCGGGGAAGAACGCACAGCAACAAAA
GCAAGCTATTATTCTCAAGATGTTGGTGGCCGCCTCTAAGACTGAGGCCA
AGTATCTTGCGCGCGCGTTGTCGGGAAAGTTGCGCATTCACCTGGCAGAC
AAGACCGTCATCGCCGCTCTGGCCGCTGCCGTCGTACTGCACCATGAAAA
TGTCTCCGATCACTTTTTGCTGCACACGGACGGAACCAAGAAGACCCGCC
TGTCGGAACGAGAGCAGCACGTCGAACAGATGGTCAAGGACGCCACTGCC
GTGCTTAATGCTGTCTATTCGCGACTGCCGGTGTGGGATATCATCATCCC
CAACATGTTGCAGTTCGGCGCTATTGATGAGCGTCTCAGTGACGCCTGTC
AGCTACTGCCGGGTGTGCCGGTATCGCCCATGCTTGCAAAGCCCACAAAG
GCCATTTCTCAGGTGTTGGAGCGCTTTGCAGAGGTCTCCTTCACGTGTGA
GTACAAGTATGACGGCGAACGCGCCCAGATTCATCGCCTCACCGACGGCT
CCATGAAGATTTATAGCAGGAATGCGGAGAATTTGACGCCCAAGTACCCG
GACTTGGTGCGACATTTGCCCACCGCGTTGCGCGACAAGTACAAGAAGTC
CTCGTTCATCATTGACGCTGAGGCGGTTGCGTACGATGTGCAGCGAAAGA
AGATTCTACCGTTTCAGGAGCTGCAAAGTCGAAAGCGAAAGGATGTGAAT
GCGGAGGACATTAAGGTGAAGGTGTGTATCTTTGCGTTTGATTTGCTTTA
CTTTGATGGAAACAGCCTGATAGAACAGCCGTTGAACAAGAGACGCAGCG
TTCTGCTGGACGCTTTTGAACAACGGGAGGGCCGATTCATGTTTGCCAAG
GGGCAGGATTCGCAGGATCCCGAGCAGATCATGGAGCTGCTCAACTCGAG
CGTGAAGGAGGGGTGCGAGGGGTTGATGGTCAAGGCGTTGGATGGCGCTA
ATTCCACGTATGAGCCGGCGAATCGCAGCCAGAACTGGCTCAAAGTGAAG
AAGGATTATCTGGACGGGTGCGGAGACTCGCTGGACCTTGTGCCCATTGG
CGGTTATCGGGGCCGCGGCAAGAGAAGCGGTGCGTACGGGGCGTTTCTGC
TGGCGTGTTACGACGGCGACAACGAGGAGTACCAATCAGTGTGTAAGATT
GGCACGGGCTTTTCAGAGGTGCAGCTGGAGGAGTTTGGCAAGTTCTTCAA
CGATGAACAGCAGAATCGGATCAGTGAAAAGGAAAAATCGTACTATCGAA
CGCCGAGTGTGAGTAGTTTGAAACCGGATGTGTGGTTTGAGCCTGTGCAG
GTTTGGGAAGTGAAATGTGCGGACTTGTCCATTTCGCCGCAACATACGGC
GGGTATTGGACGCGTTGCGGGCGATAAAGGGGTGGCGTTGCGGTTTCCAA
GGTTTGTTCGTGTTAGGGAGGACAAGGCGCCGGAGCAGGCCACGACGGCG
GAACAGGTGGTTGACATGTACTTGAATCAATCGGCGGTTGCGGATGATGG
TTAA back to topCoding sequence (CDS) from alignment at tig00004370_pilon:439404..441707- >Gchil8960.t1 ID=Gchil8960.t1|Name=Gchil8960.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2304bp|location=Sequence derived from alignment at tig00004370_pilon:439404..441707- (Gracilaria chilensis NLEC103_M9 male) ATGCGTAAGCAGCGAACGCTCACAGCCTTCTTCCGTCCGCTTTCCGCGCA GTCGTCGTCGTCCTCCTCCTCCGCGGCACCGCGGAAGGCACCGCGGAAGC GACCGCGCGCTCAGCCGCCATCGCCGCCCGCCCCGCGCAAGCGCCCGCGC ACCCCTACCTCCGCCGCCCACTCGCCTGCTCCTCCGCACCACCCCGACCC CAAACCCCATCCCGTCGAAAGCCCCCAGCGCGATGAAAGCCCCCAGCGCA ATGAAAGCCCCATGCGCGATGAAAGCCCCAAGCCCTCCAAAAGCCCCCAG TGCCATGAAAGCCCCAAGCGCGCTGAAAGCCCTACGCCCGCTGAAAAGCT AAAGCCCGAACGCGCCGCCGCTGGCGCCCACGGAAAGCCCGTGCCGTACG CCACGCTGGCGCACGCCTTCACCAACGTGGAGGCCATCACCGGTCGCCTG CACATCCAGGCCGTGTTGTGCTCTCTTTTCCGCGACATCATCGCAACATG TCCGGACGATCTCGTGCGCACCATCTACCTCTGCATCAATCGTCTGGCCC CGGCGCACCACGGAATTGAGCTCGGCGTGGGCGACGGCATCCTGCTTAAG AGTCTGTCCCTTGTCACCGGTCGTTCACTGTCGGCCCTCAAGGCCACGTA CAAGAAGTTGGGCGACTTAGGAGATGTGGCGTTTCACTCGAGAACCACGC AGAAAACCATGTTCCCGCCGCCGCCGCTCACCGTGCAAAAAGTGTTTTCC GAGCTCCAATGTATTGCCTCCGTGTCGGGGAAGAACGCACAGCAACAAAA GCAAGCTATTATTCTCAAGATGTTGGTGGCCGCCTCTAAGACTGAGGCCA AGTATCTTGCGCGCGCGTTGTCGGGAAAGTTGCGCATTCACCTGGCAGAC AAGACCGTCATCGCCGCTCTGGCCGCTGCCGTCGTACTGCACCATGAAAA TGTCTCCGATCACTTTTTGCTGCACACGGACGGAACCAAGAAGACCCGCC TGTCGGAACGAGAGCAGCACGTCGAACAGATGGTCAAGGACGCCACTGCC GTGCTTAATGCTGTCTATTCGCGACTGCCGGTGTGGGATATCATCATCCC CAACATGTTGCAGTTCGGCGCTATTGATGAGCGTCTCAGTGACGCCTGTC AGCTACTGCCGGGTGTGCCGGTATCGCCCATGCTTGCAAAGCCCACAAAG GCCATTTCTCAGGTGTTGGAGCGCTTTGCAGAGGTCTCCTTCACGTGTGA GTACAAGTATGACGGCGAACGCGCCCAGATTCATCGCCTCACCGACGGCT CCATGAAGATTTATAGCAGGAATGCGGAGAATTTGACGCCCAAGTACCCG GACTTGGTGCGACATTTGCCCACCGCGTTGCGCGACAAGTACAAGAAGTC CTCGTTCATCATTGACGCTGAGGCGGTTGCGTACGATGTGCAGCGAAAGA AGATTCTACCGTTTCAGGAGCTGCAAAGTCGAAAGCGAAAGGATGTGAAT GCGGAGGACATTAAGGTGAAGGTGTGTATCTTTGCGTTTGATTTGCTTTA CTTTGATGGAAACAGCCTGATAGAACAGCCGTTGAACAAGAGACGCAGCG TTCTGCTGGACGCTTTTGAACAACGGGAGGGCCGATTCATGTTTGCCAAG GGGCAGGATTCGCAGGATCCCGAGCAGATCATGGAGCTGCTCAACTCGAG CGTGAAGGAGGGGTGCGAGGGGTTGATGGTCAAGGCGTTGGATGGCGCTA ATTCCACGTATGAGCCGGCGAATCGCAGCCAGAACTGGCTCAAAGTGAAG AAGGATTATCTGGACGGGTGCGGAGACTCGCTGGACCTTGTGCCCATTGG CGGTTATCGGGGCCGCGGCAAGAGAAGCGGTGCGTACGGGGCGTTTCTGC TGGCGTGTTACGACGGCGACAACGAGGAGTACCAATCAGTGTGTAAGATT GGCACGGGCTTTTCAGAGGTGCAGCTGGAGGAGTTTGGCAAGTTCTTCAA CGATGAACAGCAGAATCGGATCAGTGAAAAGGAAAAATCGTACTATCGAA CGCCGAGTGTGAGTAGTTTGAAACCGGATGTGTGGTTTGAGCCTGTGCAG GTTTGGGAAGTGAAATGTGCGGACTTGTCCATTTCGCCGCAACATACGGC GGGTATTGGACGCGTTGCGGGCGATAAAGGGGTGGCGTTGCGGTTTCCAA GGTTTGTTCGTGTTAGGGAGGACAAGGCGCCGGAGCAGGCCACGACGGCG GAACAGGTGGTTGACATGTACTTGAATCAATCGGCGGTTGCGGATGATGG TTAA back to top
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