Gchil8945.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8945.t1
Unique NameGchil8945.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length504
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:253492..255003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr15815
PFAMsH_PPase
Max annot lvl2836|Bacillariophyta
KEGG koko:K01507
KEGG Pathwayko00190,map00190
Evalue2.36e-13
EggNOG OGsCOG3808@1|root,2QPJC@2759|Eukaryota,2XEH9@2836|Bacillariophyta
EC3.6.1.1
DescriptionInorganic H pyrophosphatase
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8945Gchil8945Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 253492..255003 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8945.t1.stop1Gchil8945.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 253492..253494 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8945.t1.CDS1Gchil8945.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 253492..255003 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8945.t1.exon1Gchil8945.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 253492..255003 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8945.t1.start1Gchil8945.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 255001..255003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8945.t1Gchil8945.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 253492..255003 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8945.t1 ID=Gchil8945.t1|Name=Gchil8945.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp
MKADKYRPVAASGRSLGSASTTSWRLFLCCLIGLFAGVVLSGFCGIYFVS
DSFRPAAGIQKAARSGTRALLVHCLGNGVICSLLGGSLVFAAIISSFVLY
DAFGVGVMVVSYMSLSGVACTAVALGSVGLDAQGITRIASKQRAERDGDA
VKGVGIEAASAGATFLQGASVLTGFILVLATLQQAGLQLSPRDLVGGPEQ
PPLRLISNFGIPPFDVLMVLGLIIGIFLPLVIASVLYIVARQRSVLKVRG
LDKTSVRVIGRISLLESLVPVGIAFVSPFAVGFGLGNRALITMTLASVFT
SFVLGSAVLSTGCCIQNGYAMGGIKRKRSRRNLETFAASLCEVVEPALRS
VSRMLAALSLVSVTLMRADASQGWIGGILLALAILGVCVYAYWRHRENKR
YASQGRIPLYASDRRSLSPFFVESPVFDPNKVTPGSQMSDALGAFGRPKR
PVSPRVMPGLSRRSRAEFTSIPLEPLSSPRVGKPGMITTTVLRDEAGRTP
RSN*
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spliced messenger RNA

>Gchil8945.t1 ID=Gchil8945.t1|Name=Gchil8945.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00004370_pilon:253492..255003- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCTGACAAGTACCGGCCGGTGGCTGCCTCAGGTCGGAGTCTAGG
TTCTGCGTCTACAACCTCATGGAGACTATTTCTATGCTGCCTAATAGGAC
TCTTTGCAGGCGTTGTCTTGAGTGGCTTCTGTGGGATCTACTTTGTATCC
GACTCATTCAGACCCGCAGCCGGCATCCAGAAAGCCGCTCGGTCTGGGAC
AAGAGCTCTTCTTGTGCACTGTCTTGGGAACGGTGTCATATGCAGTTTAC
TCGGAGGCTCGCTTGTCTTCGCGGCTATCATATCCTCGTTTGTTCTCTAC
GACGCCTTCGGCGTCGGCGTTATGGTTGTCTCATACATGAGCTTGAGTGG
GGTCGCTTGCACGGCCGTTGCGCTGGGTTCCGTTGGGTTAGACGCGCAAG
GTATTACGCGCATTGCATCCAAACAACGTGCGGAGAGAGACGGCGATGCT
GTCAAAGGAGTGGGAATTGAGGCCGCTTCCGCTGGGGCTACATTTCTGCA
AGGCGCATCGGTGCTCACCGGTTTTATTCTGGTTCTGGCCACGCTGCAAC
AAGCGGGGCTTCAGCTGTCACCGAGAGATCTTGTGGGTGGACCAGAGCAG
CCGCCACTGAGACTTATTTCTAACTTCGGCATTCCACCATTCGATGTTCT
CATGGTACTCGGATTGATTATCGGAATCTTTCTTCCCCTGGTGATTGCAA
GCGTTCTGTACATTGTCGCTAGGCAACGGTCGGTGCTGAAGGTTAGGGGG
TTGGACAAGACTTCAGTGCGAGTGATCGGACGTATTTCACTGCTGGAAAG
CCTGGTGCCAGTTGGAATTGCGTTTGTGTCTCCCTTTGCGGTCGGTTTCG
GACTCGGGAATCGGGCGCTCATCACGATGACGTTAGCGTCTGTTTTTACG
AGCTTCGTGCTCGGGAGCGCGGTGCTAAGCACCGGTTGTTGTATCCAGAA
TGGATACGCAATGGGCGGCATCAAGCGAAAACGCTCCAGGAGAAACTTGG
AGACTTTTGCAGCGTCGTTGTGCGAAGTTGTGGAGCCGGCATTGCGGTCT
GTGAGCAGGATGTTGGCAGCTCTGTCACTCGTATCCGTAACGCTGATGCG
TGCCGACGCGAGTCAGGGTTGGATTGGGGGTATTCTGTTGGCGCTTGCAA
TTCTCGGGGTGTGTGTCTATGCGTATTGGAGACACAGGGAGAACAAACGG
TACGCAAGCCAAGGGCGCATCCCCCTCTACGCGTCTGACCGCAGGTCGTT
GAGTCCATTCTTTGTGGAATCGCCAGTTTTCGACCCAAACAAAGTGACGC
CCGGCAGTCAAATGTCGGACGCACTTGGTGCATTCGGACGTCCCAAGCGG
CCTGTGAGTCCTCGGGTGATGCCGGGGCTTTCTCGTCGGTCGAGAGCTGA
GTTTACAAGCATCCCGTTGGAACCACTGAGCTCTCCGCGGGTTGGAAAGC
CTGGCATGATTACCACGACCGTGCTTCGGGATGAGGCTGGAAGGACGCCG
AGGTCGAATTGA
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protein sequence of Gchil8945.t1

>Gchil8945.t1 ID=Gchil8945.t1|Name=Gchil8945.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=504bp
MKADKYRPVAASGRSLGSASTTSWRLFLCCLIGLFAGVVLSGFCGIYFVS
DSFRPAAGIQKAARSGTRALLVHCLGNGVICSLLGGSLVFAAIISSFVLY
DAFGVGVMVVSYMSLSGVACTAVALGSVGLDAQGITRIASKQRAERDGDA
VKGVGIEAASAGATFLQGASVLTGFILVLATLQQAGLQLSPRDLVGGPEQ
PPLRLISNFGIPPFDVLMVLGLIIGIFLPLVIASVLYIVARQRSVLKVRG
LDKTSVRVIGRISLLESLVPVGIAFVSPFAVGFGLGNRALITMTLASVFT
SFVLGSAVLSTGCCIQNGYAMGGIKRKRSRRNLETFAASLCEVVEPALRS
VSRMLAALSLVSVTLMRADASQGWIGGILLALAILGVCVYAYWRHRENKR
YASQGRIPLYASDRRSLSPFFVESPVFDPNKVTPGSQMSDALGAFGRPKR
PVSPRVMPGLSRRSRAEFTSIPLEPLSSPRVGKPGMITTTVLRDEAGRTP
RSN*
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mRNA from alignment at tig00004370_pilon:253492..255003-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8945.t1 ID=Gchil8945.t1|Name=Gchil8945.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at tig00004370_pilon:253492..255003- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGCTGACAAGTACCGGCCGGTGGCTGCCTCAGGTCGGAGTCTAGG
TTCTGCGTCTACAACCTCATGGAGACTATTTCTATGCTGCCTAATAGGAC
TCTTTGCAGGCGTTGTCTTGAGTGGCTTCTGTGGGATCTACTTTGTATCC
GACTCATTCAGACCCGCAGCCGGCATCCAGAAAGCCGCTCGGTCTGGGAC
AAGAGCTCTTCTTGTGCACTGTCTTGGGAACGGTGTCATATGCAGTTTAC
TCGGAGGCTCGCTTGTCTTCGCGGCTATCATATCCTCGTTTGTTCTCTAC
GACGCCTTCGGCGTCGGCGTTATGGTTGTCTCATACATGAGCTTGAGTGG
GGTCGCTTGCACGGCCGTTGCGCTGGGTTCCGTTGGGTTAGACGCGCAAG
GTATTACGCGCATTGCATCCAAACAACGTGCGGAGAGAGACGGCGATGCT
GTCAAAGGAGTGGGAATTGAGGCCGCTTCCGCTGGGGCTACATTTCTGCA
AGGCGCATCGGTGCTCACCGGTTTTATTCTGGTTCTGGCCACGCTGCAAC
AAGCGGGGCTTCAGCTGTCACCGAGAGATCTTGTGGGTGGACCAGAGCAG
CCGCCACTGAGACTTATTTCTAACTTCGGCATTCCACCATTCGATGTTCT
CATGGTACTCGGATTGATTATCGGAATCTTTCTTCCCCTGGTGATTGCAA
GCGTTCTGTACATTGTCGCTAGGCAACGGTCGGTGCTGAAGGTTAGGGGG
TTGGACAAGACTTCAGTGCGAGTGATCGGACGTATTTCACTGCTGGAAAG
CCTGGTGCCAGTTGGAATTGCGTTTGTGTCTCCCTTTGCGGTCGGTTTCG
GACTCGGGAATCGGGCGCTCATCACGATGACGTTAGCGTCTGTTTTTACG
AGCTTCGTGCTCGGGAGCGCGGTGCTAAGCACCGGTTGTTGTATCCAGAA
TGGATACGCAATGGGCGGCATCAAGCGAAAACGCTCCAGGAGAAACTTGG
AGACTTTTGCAGCGTCGTTGTGCGAAGTTGTGGAGCCGGCATTGCGGTCT
GTGAGCAGGATGTTGGCAGCTCTGTCACTCGTATCCGTAACGCTGATGCG
TGCCGACGCGAGTCAGGGTTGGATTGGGGGTATTCTGTTGGCGCTTGCAA
TTCTCGGGGTGTGTGTCTATGCGTATTGGAGACACAGGGAGAACAAACGG
TACGCAAGCCAAGGGCGCATCCCCCTCTACGCGTCTGACCGCAGGTCGTT
GAGTCCATTCTTTGTGGAATCGCCAGTTTTCGACCCAAACAAAGTGACGC
CCGGCAGTCAAATGTCGGACGCACTTGGTGCATTCGGACGTCCCAAGCGG
CCTGTGAGTCCTCGGGTGATGCCGGGGCTTTCTCGTCGGTCGAGAGCTGA
GTTTACAAGCATCCCGTTGGAACCACTGAGCTCTCCGCGGGTTGGAAAGC
CTGGCATGATTACCACGACCGTGCTTCGGGATGAGGCTGGAAGGACGCCG
AGGTCGAATTGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:253492..255003-

>Gchil8945.t1 ID=Gchil8945.t1|Name=Gchil8945.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1512bp|location=Sequence derived from alignment at tig00004370_pilon:253492..255003- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAGCTGACAAGTACCGGCCGGTGGCTGCCTCAGGTCGGAGTCTAGG
TTCTGCGTCTACAACCTCATGGAGACTATTTCTATGCTGCCTAATAGGAC
TCTTTGCAGGCGTTGTCTTGAGTGGCTTCTGTGGGATCTACTTTGTATCC
GACTCATTCAGACCCGCAGCCGGCATCCAGAAAGCCGCTCGGTCTGGGAC
AAGAGCTCTTCTTGTGCACTGTCTTGGGAACGGTGTCATATGCAGTTTAC
TCGGAGGCTCGCTTGTCTTCGCGGCTATCATATCCTCGTTTGTTCTCTAC
GACGCCTTCGGCGTCGGCGTTATGGTTGTCTCATACATGAGCTTGAGTGG
GGTCGCTTGCACGGCCGTTGCGCTGGGTTCCGTTGGGTTAGACGCGCAAG
GTATTACGCGCATTGCATCCAAACAACGTGCGGAGAGAGACGGCGATGCT
GTCAAAGGAGTGGGAATTGAGGCCGCTTCCGCTGGGGCTACATTTCTGCA
AGGCGCATCGGTGCTCACCGGTTTTATTCTGGTTCTGGCCACGCTGCAAC
AAGCGGGGCTTCAGCTGTCACCGAGAGATCTTGTGGGTGGACCAGAGCAG
CCGCCACTGAGACTTATTTCTAACTTCGGCATTCCACCATTCGATGTTCT
CATGGTACTCGGATTGATTATCGGAATCTTTCTTCCCCTGGTGATTGCAA
GCGTTCTGTACATTGTCGCTAGGCAACGGTCGGTGCTGAAGGTTAGGGGG
TTGGACAAGACTTCAGTGCGAGTGATCGGACGTATTTCACTGCTGGAAAG
CCTGGTGCCAGTTGGAATTGCGTTTGTGTCTCCCTTTGCGGTCGGTTTCG
GACTCGGGAATCGGGCGCTCATCACGATGACGTTAGCGTCTGTTTTTACG
AGCTTCGTGCTCGGGAGCGCGGTGCTAAGCACCGGTTGTTGTATCCAGAA
TGGATACGCAATGGGCGGCATCAAGCGAAAACGCTCCAGGAGAAACTTGG
AGACTTTTGCAGCGTCGTTGTGCGAAGTTGTGGAGCCGGCATTGCGGTCT
GTGAGCAGGATGTTGGCAGCTCTGTCACTCGTATCCGTAACGCTGATGCG
TGCCGACGCGAGTCAGGGTTGGATTGGGGGTATTCTGTTGGCGCTTGCAA
TTCTCGGGGTGTGTGTCTATGCGTATTGGAGACACAGGGAGAACAAACGG
TACGCAAGCCAAGGGCGCATCCCCCTCTACGCGTCTGACCGCAGGTCGTT
GAGTCCATTCTTTGTGGAATCGCCAGTTTTCGACCCAAACAAAGTGACGC
CCGGCAGTCAAATGTCGGACGCACTTGGTGCATTCGGACGTCCCAAGCGG
CCTGTGAGTCCTCGGGTGATGCCGGGGCTTTCTCGTCGGTCGAGAGCTGA
GTTTACAAGCATCCCGTTGGAACCACTGAGCTCTCCGCGGGTTGGAAAGC
CTGGCATGATTACCACGACCGTGCTTCGGGATGAGGCTGGAAGGACGCCG
AGGTCGAATTGA
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