Gchil8938.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8938.t1
Unique NameGchil8938.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length348
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:233853..234896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI40423
PFAMsDUF1295
Max annot lvl4776|Peronosporales
Evalue1.04e-42
EggNOG OGsCOG3752@1|root,KOG4650@2759|Eukaryota,3Q72U@4776|Peronosporales
DescriptionProtein of unknown function (DUF1295)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8938Gchil8938Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 233853..234896 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8938.t1.stop1Gchil8938.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 233853..233855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8938.t1.CDS1Gchil8938.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 233853..234896 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8938.t1.exon1Gchil8938.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 233853..234896 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8938.t1.start1Gchil8938.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 234894..234896 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8938.t1Gchil8938.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 233853..234896 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8938.t1 ID=Gchil8938.t1|Name=Gchil8938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp
MGASHHLSLALVTINVASNRILPELVNSFSLTNLYDTIVALNPVVTAFWL
TFFLIFVQLVLCVLTRSYAWNDRFWTFIPMSFALLYALHPVISEDRRTSS
SFDLRLTVMAVLVFVWGLRLTYGSFTRGYYNPGHLDYRYPWLRANIVKND
FLFAIAYSVLVVGNMTLLLALVTSPFYIAWVSRGLSPQFTNTDVIATTGM
ALSIVVEFIADLQQQRFQNRKARWMKSTQRADTIERELTREQVAEVKRGF
VQSGLFAWCRHPNYLGEIMIWFFFYLFSISPSSEWVNWTSIGSGLYVVLF
QTTMLLSERILMEKYPAYEDYRKRVPKLIPSPFSKKLAPEAKDSKDE*
back to top

spliced messenger RNA

>Gchil8938.t1 ID=Gchil8938.t1|Name=Gchil8938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00004370_pilon:233853..234896- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCATCGCACCACCTTTCCTTGGCTCTTGTCACCATCAACGTTGC
TTCTAATCGCATACTCCCAGAGCTTGTGAATAGCTTTAGTTTGACTAATT
TATACGATACGATCGTTGCACTGAATCCGGTCGTGACTGCCTTCTGGCTC
ACTTTTTTCTTGATATTCGTGCAGTTGGTTTTGTGCGTCTTGACTCGGTC
GTACGCATGGAACGACCGCTTCTGGACTTTCATTCCGATGAGTTTTGCTC
TGCTATACGCTTTGCATCCGGTGATTAGCGAAGATCGTCGAACGAGTTCG
TCTTTCGACTTGAGGCTCACGGTTATGGCTGTTCTGGTTTTTGTATGGGG
CCTTCGCCTTACCTATGGATCGTTTACTCGGGGTTACTACAATCCTGGGC
ATCTGGACTATCGCTATCCCTGGCTTCGGGCCAATATTGTGAAGAATGAT
TTCCTGTTTGCAATCGCATACTCTGTTTTGGTCGTCGGAAATATGACACT
GCTCCTGGCATTAGTCACGTCTCCATTCTACATTGCCTGGGTGAGTCGAG
GTCTCAGCCCACAATTCACGAATACAGATGTCATTGCCACCACCGGAATG
GCTCTTTCAATCGTTGTAGAGTTCATCGCCGACTTACAACAACAGCGTTT
CCAAAACCGCAAGGCGAGGTGGATGAAAAGTACTCAAAGGGCTGATACAA
TTGAGCGAGAATTAACTCGGGAACAAGTCGCCGAAGTGAAACGCGGTTTT
GTGCAATCCGGTCTTTTCGCATGGTGTCGCCATCCAAACTATTTGGGAGA
AATAATGATTTGGTTTTTCTTCTACTTGTTTTCGATTTCACCAAGCTCCG
AATGGGTGAATTGGACTTCAATCGGTTCAGGACTATACGTTGTTCTGTTT
CAAACCACGATGCTTCTGTCAGAGAGAATCCTTATGGAGAAATATCCAGC
TTACGAGGATTACAGAAAGCGAGTTCCTAAGCTAATTCCTTCCCCATTCT
CCAAGAAGCTCGCGCCCGAGGCAAAGGACTCGAAAGATGAATGA
back to top

protein sequence of Gchil8938.t1

>Gchil8938.t1 ID=Gchil8938.t1|Name=Gchil8938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=348bp
MGASHHLSLALVTINVASNRILPELVNSFSLTNLYDTIVALNPVVTAFWL
TFFLIFVQLVLCVLTRSYAWNDRFWTFIPMSFALLYALHPVISEDRRTSS
SFDLRLTVMAVLVFVWGLRLTYGSFTRGYYNPGHLDYRYPWLRANIVKND
FLFAIAYSVLVVGNMTLLLALVTSPFYIAWVSRGLSPQFTNTDVIATTGM
ALSIVVEFIADLQQQRFQNRKARWMKSTQRADTIERELTREQVAEVKRGF
VQSGLFAWCRHPNYLGEIMIWFFFYLFSISPSSEWVNWTSIGSGLYVVLF
QTTMLLSERILMEKYPAYEDYRKRVPKLIPSPFSKKLAPEAKDSKDE*
back to top

mRNA from alignment at tig00004370_pilon:233853..234896-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8938.t1 ID=Gchil8938.t1|Name=Gchil8938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at tig00004370_pilon:233853..234896- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCATCGCACCACCTTTCCTTGGCTCTTGTCACCATCAACGTTGC
TTCTAATCGCATACTCCCAGAGCTTGTGAATAGCTTTAGTTTGACTAATT
TATACGATACGATCGTTGCACTGAATCCGGTCGTGACTGCCTTCTGGCTC
ACTTTTTTCTTGATATTCGTGCAGTTGGTTTTGTGCGTCTTGACTCGGTC
GTACGCATGGAACGACCGCTTCTGGACTTTCATTCCGATGAGTTTTGCTC
TGCTATACGCTTTGCATCCGGTGATTAGCGAAGATCGTCGAACGAGTTCG
TCTTTCGACTTGAGGCTCACGGTTATGGCTGTTCTGGTTTTTGTATGGGG
CCTTCGCCTTACCTATGGATCGTTTACTCGGGGTTACTACAATCCTGGGC
ATCTGGACTATCGCTATCCCTGGCTTCGGGCCAATATTGTGAAGAATGAT
TTCCTGTTTGCAATCGCATACTCTGTTTTGGTCGTCGGAAATATGACACT
GCTCCTGGCATTAGTCACGTCTCCATTCTACATTGCCTGGGTGAGTCGAG
GTCTCAGCCCACAATTCACGAATACAGATGTCATTGCCACCACCGGAATG
GCTCTTTCAATCGTTGTAGAGTTCATCGCCGACTTACAACAACAGCGTTT
CCAAAACCGCAAGGCGAGGTGGATGAAAAGTACTCAAAGGGCTGATACAA
TTGAGCGAGAATTAACTCGGGAACAAGTCGCCGAAGTGAAACGCGGTTTT
GTGCAATCCGGTCTTTTCGCATGGTGTCGCCATCCAAACTATTTGGGAGA
AATAATGATTTGGTTTTTCTTCTACTTGTTTTCGATTTCACCAAGCTCCG
AATGGGTGAATTGGACTTCAATCGGTTCAGGACTATACGTTGTTCTGTTT
CAAACCACGATGCTTCTGTCAGAGAGAATCCTTATGGAGAAATATCCAGC
TTACGAGGATTACAGAAAGCGAGTTCCTAAGCTAATTCCTTCCCCATTCT
CCAAGAAGCTCGCGCCCGAGGCAAAGGACTCGAAAGATGAATGA
back to top

Coding sequence (CDS) from alignment at tig00004370_pilon:233853..234896-

>Gchil8938.t1 ID=Gchil8938.t1|Name=Gchil8938.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1044bp|location=Sequence derived from alignment at tig00004370_pilon:233853..234896- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCATCGCACCACCTTTCCTTGGCTCTTGTCACCATCAACGTTGC
TTCTAATCGCATACTCCCAGAGCTTGTGAATAGCTTTAGTTTGACTAATT
TATACGATACGATCGTTGCACTGAATCCGGTCGTGACTGCCTTCTGGCTC
ACTTTTTTCTTGATATTCGTGCAGTTGGTTTTGTGCGTCTTGACTCGGTC
GTACGCATGGAACGACCGCTTCTGGACTTTCATTCCGATGAGTTTTGCTC
TGCTATACGCTTTGCATCCGGTGATTAGCGAAGATCGTCGAACGAGTTCG
TCTTTCGACTTGAGGCTCACGGTTATGGCTGTTCTGGTTTTTGTATGGGG
CCTTCGCCTTACCTATGGATCGTTTACTCGGGGTTACTACAATCCTGGGC
ATCTGGACTATCGCTATCCCTGGCTTCGGGCCAATATTGTGAAGAATGAT
TTCCTGTTTGCAATCGCATACTCTGTTTTGGTCGTCGGAAATATGACACT
GCTCCTGGCATTAGTCACGTCTCCATTCTACATTGCCTGGGTGAGTCGAG
GTCTCAGCCCACAATTCACGAATACAGATGTCATTGCCACCACCGGAATG
GCTCTTTCAATCGTTGTAGAGTTCATCGCCGACTTACAACAACAGCGTTT
CCAAAACCGCAAGGCGAGGTGGATGAAAAGTACTCAAAGGGCTGATACAA
TTGAGCGAGAATTAACTCGGGAACAAGTCGCCGAAGTGAAACGCGGTTTT
GTGCAATCCGGTCTTTTCGCATGGTGTCGCCATCCAAACTATTTGGGAGA
AATAATGATTTGGTTTTTCTTCTACTTGTTTTCGATTTCACCAAGCTCCG
AATGGGTGAATTGGACTTCAATCGGTTCAGGACTATACGTTGTTCTGTTT
CAAACCACGATGCTTCTGTCAGAGAGAATCCTTATGGAGAAATATCCAGC
TTACGAGGATTACAGAAAGCGAGTTCCTAAGCTAATTCCTTCCCCATTCT
CCAAGAAGCTCGCGCCCGAGGCAAAGGACTCGAAAGATGAATGA
back to top