Gchil8923.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8923.t1
Unique NameGchil8923.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length123
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:145655..146123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29730.Gorai.001G080200.1
PFAMsCmc1
Max annot lvl35493|Streptophyta
KEGG koko:K18171
Evalue2.59e-09
EggNOG OGsKOG4624@1|root,KOG4624@2759|Eukaryota,37WJJ@33090|Viridiplantae,3GK2J@35493|Streptophyta
DescriptionCOX assembly mitochondrial protein
COG categoryS
BRITEko00000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8923Gchil8923Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 145655..146123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8923.t1Gchil8923.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 145655..146123 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8923.t1.stop1Gchil8923.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 145655..145657 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8923.t1.CDS1Gchil8923.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 145655..145727 -
Gchil8923.t1.CDS2Gchil8923.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 145828..146123 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8923.t1.exon1Gchil8923.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 145655..145727 -
Gchil8923.t1.exon2Gchil8923.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 145828..146123 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8923.t1.intron1Gchil8923.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004370_pilon 145728..145827 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8923.t1.start1Gchil8923.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 146121..146123 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8923.t1 ID=Gchil8923.t1|Name=Gchil8923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=123bp
MPSQSSSRISDGEFKDIMQNRSSTDPVPVLIHSAENRVTRELRDLAVKGC
DEHVRRLAECAEGKLLSVIWHCRKYSKAVDVCMREFGGDEALKDELRRRH
GKKFPRAVKEYRLPDHVTASQR*
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spliced messenger RNA

>Gchil8923.t1 ID=Gchil8923.t1|Name=Gchil8923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=369bp|location=Sequence derived from alignment at tig00004370_pilon:145655..146123- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCTCAATCTTCATCACGCATCTCAGATGGGGAGTTTAAAGATAT
TATGCAAAACCGTTCCAGTACGGATCCGGTACCAGTCTTGATTCATAGTG
CAGAAAACAGGGTCACAAGGGAACTCCGGGATCTCGCTGTCAAAGGTTGT
GACGAGCACGTACGTAGGCTTGCCGAATGTGCTGAGGGAAAGCTGCTCAG
TGTCATTTGGCATTGTCGAAAATACAGTAAGGCTGTTGATGTCTGCATGA
GAGAGTTTGGAGGCGATGAAGCTCTGAAAGATGAACTCAGAAGAAGGCAC
GGGAAAAAGTTCCCGAGGGCGGTCAAGGAGTACAGGCTACCAGACCACGT
CACTGCTTCCCAAAGATGA
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protein sequence of Gchil8923.t1

>Gchil8923.t1 ID=Gchil8923.t1|Name=Gchil8923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=123bp
MPSQSSSRISDGEFKDIMQNRSSTDPVPVLIHSAENRVTRELRDLAVKGC
DEHVRRLAECAEGKLLSVIWHCRKYSKAVDVCMREFGGDEALKDELRRRH
GKKFPRAVKEYRLPDHVTASQR*
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mRNA from alignment at tig00004370_pilon:145655..146123-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8923.t1 ID=Gchil8923.t1|Name=Gchil8923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=469bp|location=Sequence derived from alignment at tig00004370_pilon:145655..146123- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTCTCAATCTTCATCACGCATCTCAGATGGGGAGTTTAAAGATAT
TATGCAAAACCGTTCCAGTACGGATCCGGTACCAGTCTTGATTCATAGTG
CAGAAAACAGGGTCACAAGGGAACTCCGGGATCTCGCTGTCAAAGGTTGT
GACGAGCACGTACGTAGGCTTGCCGAATGTGCTGAGGGAAAGCTGCTCAG
TGTCATTTGGCATTGTCGAAAATACAGTAAGGCTGTTGATGTCTGCATGA
GAGAGTTTGGAGGCGATGAAGCTCTGAAAGATGAACTCAGAAGAAGGTAA
TTTCTTTCGAAACCCCTCTCTACTAAACATGTCTGAGACCTTCGATCTAA
ACTTCAAAATCAGAACTAACATTTGCACTTCCCTTCCTCCACGTAGGCAC
GGGAAAAAGTTCCCGAGGGCGGTCAAGGAGTACAGGCTACCAGACCACGT
CACTGCTTCCCAAAGATGA
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Coding sequence (CDS) from alignment at tig00004370_pilon:145655..146123-

>Gchil8923.t1 ID=Gchil8923.t1|Name=Gchil8923.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=369bp|location=Sequence derived from alignment at tig00004370_pilon:145655..146123- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTTCTCAATCTTCATCACGCATCTCAGATGGGGAGTTTAAAGATAT
TATGCAAAACCGTTCCAGTACGGATCCGGTACCAGTCTTGATTCATAGTG
CAGAAAACAGGGTCACAAGGGAACTCCGGGATCTCGCTGTCAAAGGTTGT
GACGAGCACGTACGTAGGCTTGCCGAATGTGCTGAGGGAAAGCTGCTCAG
TGTCATTTGGCATTGTCGAAAATACAGTAAGGCTGTTGATGTCTGCATGA
GAGAGTTTGGAGGCGATGAAGCTCTGAAAGATGAACTCAGAAGAAGGCAC
GGGAAAAAGTTCCCGAGGGCGGTCAAGGAGTACAGGCTACCAGACCACGT
CACTGCTTCCCAAAGATGA
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