Gchil8921.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8921.t1
Unique Name	Gchil8921.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	246

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004370_pilon	contig	tig00004370_pilon:142222..142959 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ27666
PFAMs	PRAI
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC00945
KEGG ko	ko:K01817
KEGG Reaction	R03509
KEGG Pathway	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG Module	M00023
GOs	GO:0000162,GO:0003674,GO:0003824,GO:0004640,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006568,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009308,GO:0009309,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009987,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0018130,GO:0019438,GO:0019752,GO:0032501,GO:0032502,GO:0034641,GO:0040007,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0048856,GO:0050896,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue	1.77e-42
EggNOG OGs	COG0135@1\|root,KOG4202@2759\|Eukaryota,37KQ9@33090\|Viridiplantae,3GB5H@35493\|Streptophyta
EC	5.3.1.24
Description	N-(5'-phosphoribosyl)anthranilate isomerase
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8921	Gchil8921	Gracilaria chilensis NLEC103_M9 male	gene	tig00004370_pilon 142222..142959 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8921.t1.stop1	Gchil8921.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004370_pilon 142222..142224 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8921.t1.CDS1	Gchil8921.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004370_pilon 142222..142959 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8921.t1.exon1	Gchil8921.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004370_pilon 142222..142959 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8921.t1.start1	Gchil8921.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004370_pilon 142957..142959 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8921.t1	Gchil8921.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004370_pilon 142222..142959 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004370_pilon:142222..142959-
coding sequence from alignment at tig00004370_pilon:142222..142959-

mRNA sequence

>Gchil8921.t1 ID=Gchil8921.t1|Name=Gchil8921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=246bp
MSITWISNKNVTLPPPAFAALLSSPTPSLKAVKVCAVVCPKDAEMIVAAA
KEVLPANIELLIGMILWPNSRRSINKTTAYQISTVAARLGAQPVAVFVDE
TVKQMHDTCREIGVEVAQLHGPMCRSHWIHDAYDTKLKCIDVRDVTSDGT
VSTPTSSPRGPALWTIFDAEGGGTGYAFDWNIFKPPKHPWLLAGGLNSQN
VGNAIRKMRPSGVDVATGVTSSDKCRKDEARLYEFLTTVVRSYSQ*

spliced messenger RNA

>Gchil8921.t1 ID=Gchil8921.t1|Name=Gchil8921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00004370_pilon:142222..142959- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATTACCTGGATCTCTAATAAGAATGTGACGCTGCCTCCCCCAGC
CTTCGCGGCGCTCTTATCGTCTCCAACCCCCTCCTTAAAGGCTGTGAAAG
TCTGCGCTGTCGTATGCCCGAAAGACGCCGAAATGATCGTTGCGGCAGCT
AAGGAAGTCCTGCCGGCAAATATTGAACTTCTGATCGGTATGATTCTATG
GCCAAACTCTCGTCGTTCGATAAACAAGACTACAGCGTACCAAATATCCA
CCGTTGCAGCGAGACTCGGAGCGCAACCTGTAGCTGTTTTTGTGGATGAA
ACGGTAAAGCAAATGCACGACACATGTCGAGAAATTGGTGTGGAAGTTGC
TCAGCTTCACGGGCCTATGTGTCGATCTCACTGGATCCATGACGCATATG
ACACAAAATTGAAATGCATTGATGTGCGTGATGTGACGTCCGATGGTACC
GTCTCTACTCCAACATCTTCTCCTCGTGGTCCGGCCCTTTGGACAATCTT
CGACGCAGAAGGAGGGGGGACTGGATACGCATTTGACTGGAATATTTTCA
AGCCTCCAAAACACCCTTGGCTCTTAGCCGGTGGCCTCAATTCTCAAAAT
GTGGGAAACGCCATTCGAAAAATGAGACCAAGCGGTGTGGATGTGGCCAC
GGGCGTGACATCCTCTGATAAATGCCGGAAGGATGAAGCGCGGTTGTATG
AGTTTCTGACAACGGTAGTGAGGAGCTATTCACAATGA

protein sequence of Gchil8921.t1

>Gchil8921.t1 ID=Gchil8921.t1|Name=Gchil8921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=246bp
MSITWISNKNVTLPPPAFAALLSSPTPSLKAVKVCAVVCPKDAEMIVAAA
KEVLPANIELLIGMILWPNSRRSINKTTAYQISTVAARLGAQPVAVFVDE
TVKQMHDTCREIGVEVAQLHGPMCRSHWIHDAYDTKLKCIDVRDVTSDGT
VSTPTSSPRGPALWTIFDAEGGGTGYAFDWNIFKPPKHPWLLAGGLNSQN
VGNAIRKMRPSGVDVATGVTSSDKCRKDEARLYEFLTTVVRSYSQ*

mRNA from alignment at tig00004370_pilon:142222..142959-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8921.t1 ID=Gchil8921.t1|Name=Gchil8921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=738bp|location=Sequence derived from alignment at tig00004370_pilon:142222..142959- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCATTACCTGGATCTCTAATAAGAATGTGACGCTGCCTCCCCCAGC
CTTCGCGGCGCTCTTATCGTCTCCAACCCCCTCCTTAAAGGCTGTGAAAG
TCTGCGCTGTCGTATGCCCGAAAGACGCCGAAATGATCGTTGCGGCAGCT
AAGGAAGTCCTGCCGGCAAATATTGAACTTCTGATCGGTATGATTCTATG
GCCAAACTCTCGTCGTTCGATAAACAAGACTACAGCGTACCAAATATCCA
CCGTTGCAGCGAGACTCGGAGCGCAACCTGTAGCTGTTTTTGTGGATGAA
ACGGTAAAGCAAATGCACGACACATGTCGAGAAATTGGTGTGGAAGTTGC
TCAGCTTCACGGGCCTATGTGTCGATCTCACTGGATCCATGACGCATATG
ACACAAAATTGAAATGCATTGATGTGCGTGATGTGACGTCCGATGGTACC
GTCTCTACTCCAACATCTTCTCCTCGTGGTCCGGCCCTTTGGACAATCTT
CGACGCAGAAGGAGGGGGGACTGGATACGCATTTGACTGGAATATTTTCA
AGCCTCCAAAACACCCTTGGCTCTTAGCCGGTGGCCTCAATTCTCAAAAT
GTGGGAAACGCCATTCGAAAAATGAGACCAAGCGGTGTGGATGTGGCCAC
GGGCGTGACATCCTCTGATAAATGCCGGAAGGATGAAGCGCGGTTGTATG
AGTTTCTGACAACGGTAGTGAGGAGCTATTCACAATGA

Coding sequence (CDS) from alignment at tig00004370_pilon:142222..142959-

>Gchil8921.t1 ID=Gchil8921.t1|Name=Gchil8921.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=738bp|location=Sequence derived from alignment at tig00004370_pilon:142222..142959- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCATTACCTGGATCTCTAATAAGAATGTGACGCTGCCTCCCCCAGC
CTTCGCGGCGCTCTTATCGTCTCCAACCCCCTCCTTAAAGGCTGTGAAAG
TCTGCGCTGTCGTATGCCCGAAAGACGCCGAAATGATCGTTGCGGCAGCT
AAGGAAGTCCTGCCGGCAAATATTGAACTTCTGATCGGTATGATTCTATG
GCCAAACTCTCGTCGTTCGATAAACAAGACTACAGCGTACCAAATATCCA
CCGTTGCAGCGAGACTCGGAGCGCAACCTGTAGCTGTTTTTGTGGATGAA
ACGGTAAAGCAAATGCACGACACATGTCGAGAAATTGGTGTGGAAGTTGC
TCAGCTTCACGGGCCTATGTGTCGATCTCACTGGATCCATGACGCATATG
ACACAAAATTGAAATGCATTGATGTGCGTGATGTGACGTCCGATGGTACC
GTCTCTACTCCAACATCTTCTCCTCGTGGTCCGGCCCTTTGGACAATCTT
CGACGCAGAAGGAGGGGGGACTGGATACGCATTTGACTGGAATATTTTCA
AGCCTCCAAAACACCCTTGGCTCTTAGCCGGTGGCCTCAATTCTCAAAAT
GTGGGAAACGCCATTCGAAAAATGAGACCAAGCGGTGTGGATGTGGCCAC
GGGCGTGACATCCTCTGATAAATGCCGGAAGGATGAAGCGCGGTTGTATG
AGTTTCTGACAACGGTAGTGAGGAGCTATTCACAATGA