Gchil8909.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8909.t1
Unique NameGchil8909.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length479
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:22164..23600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8909Gchil8909Gracilaria chilensis NLEC103_M9 malegenetig00004370_pilon 22164..23600 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8909.t1.stop1Gchil8909.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004370_pilon 22164..22166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8909.t1.CDS1Gchil8909.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004370_pilon 22164..23600 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8909.t1.exon1Gchil8909.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004370_pilon 22164..23600 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8909.t1.start1Gchil8909.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004370_pilon 23598..23600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8909.t1Gchil8909.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004370_pilon 22164..23600 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8909.t1 ID=Gchil8909.t1|Name=Gchil8909.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=479bp
MSLFEGIDVTPQSTLSTIQFSNEAINTVITSLLTTLVIANLGSLINRLVF
LSNRDSFSYTSFCRSFIFINSDDPLRLLSWFRGRYEYKHSQQQSSTQQKI
QGRRLITPLLARIALLIVGIGSIALALPSEKRLDACSRRDQALIQIPLPS
DEQLVVDPQQLLKVCSQIPLRTQLGTVRSSASYCSVTGLPVSLSFINNFE
QVATQVQTPGFIGTAYSNDTGALVSLIFSGDSVQALNSFVEWKTEDDKLF
RSIMPIYNGERHLDVLAQSLSQATGQQCRRDFTITNNTDAGVFFVSTLDC
QFEANDAITYVAAGVRESLRFQEQSNVALRIPVDGVVKQIDRICAIDVSV
TRPLINIVPLAVGLLFAFCLNMAVAITVSHRGNAMDAAFHIVREILGHDT
SANPLQTNRELDDVQMVALQKFLCADGISAHVGFVQGVGDIAVREIGAER
VVGRCMQVACRGLRFVKEGTDKGVGSSV*
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spliced messenger RNA

>Gchil8909.t1 ID=Gchil8909.t1|Name=Gchil8909.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00004370_pilon:22164..23600- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTTTTTGAAGGAATTGATGTAACACCGCAATCCACCCTATCCAC
CATTCAATTCAGCAACGAGGCCATCAACACAGTTATCACCTCTCTTCTCA
CCACGTTAGTCATAGCCAATCTTGGCAGTCTCATCAATCGTCTTGTCTTT
CTTTCCAACCGTGATTCATTTTCGTACACTTCCTTCTGTCGATCATTTAT
TTTCATCAATTCAGATGATCCTTTACGATTACTTTCGTGGTTTCGTGGTC
GTTATGAATATAAACATTCACAGCAACAATCATCAACACAACAAAAGATT
CAGGGACGTCGTCTCATCACGCCGCTTTTGGCGCGTATTGCCTTGTTGAT
TGTTGGTATTGGTTCTATTGCTCTGGCCTTACCCTCGGAGAAACGGCTTG
ATGCGTGTAGTCGTCGTGATCAAGCACTCATTCAAATACCTCTACCTTCG
GATGAGCAACTTGTCGTCGATCCCCAACAACTTTTGAAGGTTTGCTCTCA
AATTCCGTTGCGAACGCAGCTTGGTACCGTCAGATCATCCGCATCGTACT
GCTCGGTTACTGGCTTACCAGTCTCTCTTTCCTTTATCAACAACTTCGAG
CAGGTTGCTACACAGGTACAAACGCCGGGGTTTATCGGAACCGCTTATTC
AAATGACACTGGTGCCTTAGTATCGTTGATATTCTCGGGAGATTCTGTTC
AGGCATTGAATTCTTTTGTGGAATGGAAGACTGAAGATGACAAATTATTT
CGGTCTATCATGCCGATATATAATGGAGAAAGGCACCTTGACGTTCTTGC
TCAATCTTTAAGTCAAGCTACTGGTCAACAATGTCGAAGAGACTTCACAA
TCACAAACAACACAGATGCGGGCGTTTTTTTTGTTTCTACCCTAGACTGT
CAATTTGAAGCAAATGATGCCATAACTTACGTTGCTGCAGGTGTCAGAGA
AAGCCTCCGCTTTCAAGAACAATCCAATGTAGCCCTTCGCATACCAGTGG
ACGGAGTCGTCAAACAAATCGATCGCATCTGTGCGATAGATGTATCAGTA
ACACGTCCACTAATCAACATCGTACCCCTAGCAGTCGGCCTACTATTCGC
ATTTTGTCTCAACATGGCAGTCGCAATCACAGTTTCCCACCGTGGAAACG
CAATGGATGCCGCCTTTCACATTGTGCGCGAGATACTTGGACATGATACC
AGTGCAAACCCTTTGCAAACGAATCGGGAGCTCGATGATGTGCAAATGGT
AGCGTTGCAGAAGTTCTTGTGTGCGGATGGCATCTCGGCTCATGTGGGCT
TTGTGCAGGGAGTGGGAGATATCGCGGTGCGGGAGATTGGCGCGGAACGC
GTTGTGGGCAGGTGTATGCAGGTGGCTTGTAGGGGTTTGCGATTTGTGAA
GGAGGGCACTGACAAAGGGGTTGGATCGTCTGTGTAG
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protein sequence of Gchil8909.t1

>Gchil8909.t1 ID=Gchil8909.t1|Name=Gchil8909.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=479bp
MSLFEGIDVTPQSTLSTIQFSNEAINTVITSLLTTLVIANLGSLINRLVF
LSNRDSFSYTSFCRSFIFINSDDPLRLLSWFRGRYEYKHSQQQSSTQQKI
QGRRLITPLLARIALLIVGIGSIALALPSEKRLDACSRRDQALIQIPLPS
DEQLVVDPQQLLKVCSQIPLRTQLGTVRSSASYCSVTGLPVSLSFINNFE
QVATQVQTPGFIGTAYSNDTGALVSLIFSGDSVQALNSFVEWKTEDDKLF
RSIMPIYNGERHLDVLAQSLSQATGQQCRRDFTITNNTDAGVFFVSTLDC
QFEANDAITYVAAGVRESLRFQEQSNVALRIPVDGVVKQIDRICAIDVSV
TRPLINIVPLAVGLLFAFCLNMAVAITVSHRGNAMDAAFHIVREILGHDT
SANPLQTNRELDDVQMVALQKFLCADGISAHVGFVQGVGDIAVREIGAER
VVGRCMQVACRGLRFVKEGTDKGVGSSV*
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mRNA from alignment at tig00004370_pilon:22164..23600-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8909.t1 ID=Gchil8909.t1|Name=Gchil8909.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1437bp|location=Sequence derived from alignment at tig00004370_pilon:22164..23600- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTTTTTGAAGGAATTGATGTAACACCGCAATCCACCCTATCCAC
CATTCAATTCAGCAACGAGGCCATCAACACAGTTATCACCTCTCTTCTCA
CCACGTTAGTCATAGCCAATCTTGGCAGTCTCATCAATCGTCTTGTCTTT
CTTTCCAACCGTGATTCATTTTCGTACACTTCCTTCTGTCGATCATTTAT
TTTCATCAATTCAGATGATCCTTTACGATTACTTTCGTGGTTTCGTGGTC
GTTATGAATATAAACATTCACAGCAACAATCATCAACACAACAAAAGATT
CAGGGACGTCGTCTCATCACGCCGCTTTTGGCGCGTATTGCCTTGTTGAT
TGTTGGTATTGGTTCTATTGCTCTGGCCTTACCCTCGGAGAAACGGCTTG
ATGCGTGTAGTCGTCGTGATCAAGCACTCATTCAAATACCTCTACCTTCG
GATGAGCAACTTGTCGTCGATCCCCAACAACTTTTGAAGGTTTGCTCTCA
AATTCCGTTGCGAACGCAGCTTGGTACCGTCAGATCATCCGCATCGTACT
GCTCGGTTACTGGCTTACCAGTCTCTCTTTCCTTTATCAACAACTTCGAG
CAGGTTGCTACACAGGTACAAACGCCGGGGTTTATCGGAACCGCTTATTC
AAATGACACTGGTGCCTTAGTATCGTTGATATTCTCGGGAGATTCTGTTC
AGGCATTGAATTCTTTTGTGGAATGGAAGACTGAAGATGACAAATTATTT
CGGTCTATCATGCCGATATATAATGGAGAAAGGCACCTTGACGTTCTTGC
TCAATCTTTAAGTCAAGCTACTGGTCAACAATGTCGAAGAGACTTCACAA
TCACAAACAACACAGATGCGGGCGTTTTTTTTGTTTCTACCCTAGACTGT
CAATTTGAAGCAAATGATGCCATAACTTACGTTGCTGCAGGTGTCAGAGA
AAGCCTCCGCTTTCAAGAACAATCCAATGTAGCCCTTCGCATACCAGTGG
ACGGAGTCGTCAAACAAATCGATCGCATCTGTGCGATAGATGTATCAGTA
ACACGTCCACTAATCAACATCGTACCCCTAGCAGTCGGCCTACTATTCGC
ATTTTGTCTCAACATGGCAGTCGCAATCACAGTTTCCCACCGTGGAAACG
CAATGGATGCCGCCTTTCACATTGTGCGCGAGATACTTGGACATGATACC
AGTGCAAACCCTTTGCAAACGAATCGGGAGCTCGATGATGTGCAAATGGT
AGCGTTGCAGAAGTTCTTGTGTGCGGATGGCATCTCGGCTCATGTGGGCT
TTGTGCAGGGAGTGGGAGATATCGCGGTGCGGGAGATTGGCGCGGAACGC
GTTGTGGGCAGGTGTATGCAGGTGGCTTGTAGGGGTTTGCGATTTGTGAA
GGAGGGCACTGACAAAGGGGTTGGATCGTCTGTGTAG
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Coding sequence (CDS) from alignment at tig00004370_pilon:22164..23600-

>Gchil8909.t1 ID=Gchil8909.t1|Name=Gchil8909.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1437bp|location=Sequence derived from alignment at tig00004370_pilon:22164..23600- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCTTTTTGAAGGAATTGATGTAACACCGCAATCCACCCTATCCAC
CATTCAATTCAGCAACGAGGCCATCAACACAGTTATCACCTCTCTTCTCA
CCACGTTAGTCATAGCCAATCTTGGCAGTCTCATCAATCGTCTTGTCTTT
CTTTCCAACCGTGATTCATTTTCGTACACTTCCTTCTGTCGATCATTTAT
TTTCATCAATTCAGATGATCCTTTACGATTACTTTCGTGGTTTCGTGGTC
GTTATGAATATAAACATTCACAGCAACAATCATCAACACAACAAAAGATT
CAGGGACGTCGTCTCATCACGCCGCTTTTGGCGCGTATTGCCTTGTTGAT
TGTTGGTATTGGTTCTATTGCTCTGGCCTTACCCTCGGAGAAACGGCTTG
ATGCGTGTAGTCGTCGTGATCAAGCACTCATTCAAATACCTCTACCTTCG
GATGAGCAACTTGTCGTCGATCCCCAACAACTTTTGAAGGTTTGCTCTCA
AATTCCGTTGCGAACGCAGCTTGGTACCGTCAGATCATCCGCATCGTACT
GCTCGGTTACTGGCTTACCAGTCTCTCTTTCCTTTATCAACAACTTCGAG
CAGGTTGCTACACAGGTACAAACGCCGGGGTTTATCGGAACCGCTTATTC
AAATGACACTGGTGCCTTAGTATCGTTGATATTCTCGGGAGATTCTGTTC
AGGCATTGAATTCTTTTGTGGAATGGAAGACTGAAGATGACAAATTATTT
CGGTCTATCATGCCGATATATAATGGAGAAAGGCACCTTGACGTTCTTGC
TCAATCTTTAAGTCAAGCTACTGGTCAACAATGTCGAAGAGACTTCACAA
TCACAAACAACACAGATGCGGGCGTTTTTTTTGTTTCTACCCTAGACTGT
CAATTTGAAGCAAATGATGCCATAACTTACGTTGCTGCAGGTGTCAGAGA
AAGCCTCCGCTTTCAAGAACAATCCAATGTAGCCCTTCGCATACCAGTGG
ACGGAGTCGTCAAACAAATCGATCGCATCTGTGCGATAGATGTATCAGTA
ACACGTCCACTAATCAACATCGTACCCCTAGCAGTCGGCCTACTATTCGC
ATTTTGTCTCAACATGGCAGTCGCAATCACAGTTTCCCACCGTGGAAACG
CAATGGATGCCGCCTTTCACATTGTGCGCGAGATACTTGGACATGATACC
AGTGCAAACCCTTTGCAAACGAATCGGGAGCTCGATGATGTGCAAATGGT
AGCGTTGCAGAAGTTCTTGTGTGCGGATGGCATCTCGGCTCATGTGGGCT
TTGTGCAGGGAGTGGGAGATATCGCGGTGCGGGAGATTGGCGCGGAACGC
GTTGTGGGCAGGTGTATGCAGGTGGCTTGTAGGGGTTTGCGATTTGTGAA
GGAGGGCACTGACAAAGGGGTTGGATCGTCTGTGTAG
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