Gchil8852.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8852.t1
Unique Name	Gchil8852.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	385

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000120_pilon	contig	tig00000120_pilon:23085..24239 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28564.XP_002482995.1
PFAMs	DEAD,Helicase_C,OrsD
Max annot lvl	4751\|Fungi
GOs	GO:0000228,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000784,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0009378,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032508,GO:0033554,GO:0034641,GO:0042592,GO:0042623,GO:0043138,GO:0043140,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0060249,GO:0065007,GO:0065008,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098687,GO:0140097,GO:1901360,GO:1901363
Evalue	1.9e-19
EggNOG OGs	COG0514@1\|root,KOG0351@2759\|Eukaryota,39XWQ@33154\|Opisthokonta,3P10I@4751\|Fungi,3RKKE@4890\|Ascomycota,20T7Z@147545\|Eurotiomycetes,3SB4Q@5042\|Eurotiales
Description	Encoded by
COG category	A

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8852	Gchil8852	Gracilaria chilensis NLEC103_M9 male	gene	tig00000120_pilon 23085..24239 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8852.t1.start1	Gchil8852.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000120_pilon 23085..23087 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8852.t1.CDS1	Gchil8852.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000120_pilon 23085..24239 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8852.t1.exon1	Gchil8852.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000120_pilon 23085..24239 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8852.t1.stop1	Gchil8852.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000120_pilon 24237..24239 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8852.t1	Gchil8852.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000120_pilon 23085..24239 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000120_pilon:23085..24239+
coding sequence from alignment at tig00000120_pilon:23085..24239+

mRNA sequence

>Gchil8852.t1 ID=Gchil8852.t1|Name=Gchil8852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=385bp
MERDPKRSRKSNKHCSISEGKGATWGGNACEAVRTQDLKPGEEQFQQSKP
SGHEVSRTVIEVENYRLPLLYLRKALSIPETHFKSEAQAQAIQMVYTGSE
DLILVLGTGQGKSLVYQVPALMSRRRNVVFVVVVPLLSLLQELSKKSQGR
GLRVGSWEKREILDYDILFLTAEPLSGMDFEPYIAKVLCHRKNVQLVVEE
CHLTLLWSCFRPAMESFQMRLSNPCLPMRKIVLSATIPPVMFEKVAKAHG
LSPNYRVIRRDTLRQNLCYEVRNVNLEKFGNTVSRMVQATIHQLKLEIEH
IFCETITRMEKVQSVKERHQIVVYCPSCSLVDEVFKQLLAQELYSSELDL
TDYSSIEWNGKMMSVPIRVGKLVLVFEFPLSYYA*

spliced messenger RNA

>Gchil8852.t1 ID=Gchil8852.t1|Name=Gchil8852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000120_pilon:23085..24239+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACGCGACCCGAAGCGAAGCCGGAAAAGTAATAAACATTGTTCCAT
ATCCGAAGGCAAGGGTGCTACATGGGGGGGAAATGCGTGCGAAGCAGTAC
GTACACAAGATTTGAAACCAGGAGAAGAGCAATTTCAACAGTCGAAGCCT
AGCGGACACGAAGTGAGTCGAACGGTGATCGAGGTTGAGAACTACAGGTT
ACCCCTGTTATACTTACGAAAAGCTTTGAGTATTCCAGAAACACATTTTA
AATCTGAAGCTCAAGCGCAAGCAATTCAAATGGTTTACACTGGTTCCGAA
GATCTCATATTAGTATTGGGAACGGGACAAGGAAAGTCCCTTGTGTACCA
AGTGCCCGCACTTATGTCCAGACGCAGAAACGTGGTATTCGTTGTCGTTG
TGCCTCTTCTCTCGCTGTTGCAAGAGCTCAGCAAAAAGAGTCAGGGAAGA
GGTCTCCGAGTAGGAAGTTGGGAGAAAAGAGAAATATTGGATTATGACAT
TTTGTTTCTGACGGCGGAACCTTTATCAGGAATGGATTTCGAGCCGTACA
TTGCAAAAGTCCTCTGCCATCGGAAAAATGTGCAACTCGTCGTCGAAGAA
TGCCATTTGACTCTGCTTTGGAGTTGCTTTCGACCCGCAATGGAAAGTTT
TCAAATGCGTCTCAGTAACCCTTGCCTACCGATGCGAAAGATTGTTCTCA
GTGCAACGATTCCGCCTGTCATGTTTGAAAAGGTTGCCAAAGCGCACGGG
CTTTCACCCAACTACCGCGTGATACGTAGAGACACTTTGCGCCAAAACCT
ATGTTACGAGGTGCGCAATGTCAATTTGGAAAAGTTTGGAAATACGGTAT
CCCGTATGGTGCAAGCTACAATTCATCAATTGAAGCTCGAAATTGAACAT
ATATTTTGTGAAACGATAACCAGAATGGAGAAAGTTCAAAGCGTGAAAGA
AAGGCACCAAATTGTGGTATACTGCCCTTCGTGTTCTTTAGTAGATGAAG
TCTTTAAGCAGCTCCTGGCGCAGGAATTGTACTCCAGTGAATTGGATCTC
ACAGACTACTCATCAATCGAATGGAATGGAAAGATGATGTCTGTTCCTAT
ACGAGTCGGAAAACTGGTACTAGTCTTCGAATTCCCTCTTTCATATTACG
CTTGA

protein sequence of Gchil8852.t1

>Gchil8852.t1 ID=Gchil8852.t1|Name=Gchil8852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=385bp
MERDPKRSRKSNKHCSISEGKGATWGGNACEAVRTQDLKPGEEQFQQSKP
SGHEVSRTVIEVENYRLPLLYLRKALSIPETHFKSEAQAQAIQMVYTGSE
DLILVLGTGQGKSLVYQVPALMSRRRNVVFVVVVPLLSLLQELSKKSQGR
GLRVGSWEKREILDYDILFLTAEPLSGMDFEPYIAKVLCHRKNVQLVVEE
CHLTLLWSCFRPAMESFQMRLSNPCLPMRKIVLSATIPPVMFEKVAKAHG
LSPNYRVIRRDTLRQNLCYEVRNVNLEKFGNTVSRMVQATIHQLKLEIEH
IFCETITRMEKVQSVKERHQIVVYCPSCSLVDEVFKQLLAQELYSSELDL
TDYSSIEWNGKMMSVPIRVGKLVLVFEFPLSYYA*

mRNA from alignment at tig00000120_pilon:23085..24239+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8852.t1 ID=Gchil8852.t1|Name=Gchil8852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000120_pilon:23085..24239+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACGCGACCCGAAGCGAAGCCGGAAAAGTAATAAACATTGTTCCAT
ATCCGAAGGCAAGGGTGCTACATGGGGGGGAAATGCGTGCGAAGCAGTAC
GTACACAAGATTTGAAACCAGGAGAAGAGCAATTTCAACAGTCGAAGCCT
AGCGGACACGAAGTGAGTCGAACGGTGATCGAGGTTGAGAACTACAGGTT
ACCCCTGTTATACTTACGAAAAGCTTTGAGTATTCCAGAAACACATTTTA
AATCTGAAGCTCAAGCGCAAGCAATTCAAATGGTTTACACTGGTTCCGAA
GATCTCATATTAGTATTGGGAACGGGACAAGGAAAGTCCCTTGTGTACCA
AGTGCCCGCACTTATGTCCAGACGCAGAAACGTGGTATTCGTTGTCGTTG
TGCCTCTTCTCTCGCTGTTGCAAGAGCTCAGCAAAAAGAGTCAGGGAAGA
GGTCTCCGAGTAGGAAGTTGGGAGAAAAGAGAAATATTGGATTATGACAT
TTTGTTTCTGACGGCGGAACCTTTATCAGGAATGGATTTCGAGCCGTACA
TTGCAAAAGTCCTCTGCCATCGGAAAAATGTGCAACTCGTCGTCGAAGAA
TGCCATTTGACTCTGCTTTGGAGTTGCTTTCGACCCGCAATGGAAAGTTT
TCAAATGCGTCTCAGTAACCCTTGCCTACCGATGCGAAAGATTGTTCTCA
GTGCAACGATTCCGCCTGTCATGTTTGAAAAGGTTGCCAAAGCGCACGGG
CTTTCACCCAACTACCGCGTGATACGTAGAGACACTTTGCGCCAAAACCT
ATGTTACGAGGTGCGCAATGTCAATTTGGAAAAGTTTGGAAATACGGTAT
CCCGTATGGTGCAAGCTACAATTCATCAATTGAAGCTCGAAATTGAACAT
ATATTTTGTGAAACGATAACCAGAATGGAGAAAGTTCAAAGCGTGAAAGA
AAGGCACCAAATTGTGGTATACTGCCCTTCGTGTTCTTTAGTAGATGAAG
TCTTTAAGCAGCTCCTGGCGCAGGAATTGTACTCCAGTGAATTGGATCTC
ACAGACTACTCATCAATCGAATGGAATGGAAAGATGATGTCTGTTCCTAT
ACGAGTCGGAAAACTGGTACTAGTCTTCGAATTCCCTCTTTCATATTACG
CTTGA

Coding sequence (CDS) from alignment at tig00000120_pilon:23085..24239+

>Gchil8852.t1 ID=Gchil8852.t1|Name=Gchil8852.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1155bp|location=Sequence derived from alignment at tig00000120_pilon:23085..24239+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAACGCGACCCGAAGCGAAGCCGGAAAAGTAATAAACATTGTTCCAT
ATCCGAAGGCAAGGGTGCTACATGGGGGGGAAATGCGTGCGAAGCAGTAC
GTACACAAGATTTGAAACCAGGAGAAGAGCAATTTCAACAGTCGAAGCCT
AGCGGACACGAAGTGAGTCGAACGGTGATCGAGGTTGAGAACTACAGGTT
ACCCCTGTTATACTTACGAAAAGCTTTGAGTATTCCAGAAACACATTTTA
AATCTGAAGCTCAAGCGCAAGCAATTCAAATGGTTTACACTGGTTCCGAA
GATCTCATATTAGTATTGGGAACGGGACAAGGAAAGTCCCTTGTGTACCA
AGTGCCCGCACTTATGTCCAGACGCAGAAACGTGGTATTCGTTGTCGTTG
TGCCTCTTCTCTCGCTGTTGCAAGAGCTCAGCAAAAAGAGTCAGGGAAGA
GGTCTCCGAGTAGGAAGTTGGGAGAAAAGAGAAATATTGGATTATGACAT
TTTGTTTCTGACGGCGGAACCTTTATCAGGAATGGATTTCGAGCCGTACA
TTGCAAAAGTCCTCTGCCATCGGAAAAATGTGCAACTCGTCGTCGAAGAA
TGCCATTTGACTCTGCTTTGGAGTTGCTTTCGACCCGCAATGGAAAGTTT
TCAAATGCGTCTCAGTAACCCTTGCCTACCGATGCGAAAGATTGTTCTCA
GTGCAACGATTCCGCCTGTCATGTTTGAAAAGGTTGCCAAAGCGCACGGG
CTTTCACCCAACTACCGCGTGATACGTAGAGACACTTTGCGCCAAAACCT
ATGTTACGAGGTGCGCAATGTCAATTTGGAAAAGTTTGGAAATACGGTAT
CCCGTATGGTGCAAGCTACAATTCATCAATTGAAGCTCGAAATTGAACAT
ATATTTTGTGAAACGATAACCAGAATGGAGAAAGTTCAAAGCGTGAAAGA
AAGGCACCAAATTGTGGTATACTGCCCTTCGTGTTCTTTAGTAGATGAAG
TCTTTAAGCAGCTCCTGGCGCAGGAATTGTACTCCAGTGAATTGGATCTC
ACAGACTACTCATCAATCGAATGGAATGGAAAGATGATGTCTGTTCCTAT
ACGAGTCGGAAAACTGGTACTAGTCTTCGAATTCCCTCTTTCATATTACG
CTTGA