Gchil884.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil884.t1
Unique NameGchil884.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000017_piloncontigtig00000017_pilon:792111..793523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil884Gchil884Gracilaria chilensis NLEC103_M9 malegenetig00000017_pilon 792111..793523 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil884.t1.stop1Gchil884.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000017_pilon 792111..792113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil884.t1.CDS1Gchil884.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000017_pilon 792111..793523 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil884.t1.exon1Gchil884.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000017_pilon 792111..793523 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil884.t1.start1Gchil884.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000017_pilon 793521..793523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil884.t1Gchil884.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000017_pilon 792111..793523 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil884.t1 ID=Gchil884.t1|Name=Gchil884.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp
MSSSEQSSMPAVTQQPASPAPSPLPAVNENSSLPSTPQSLFEEQFHVSAL
DRRQLGALHLLPATAEELFDIDRFKYGEYDLVDGLLNWRGMWESDRNKEQ
AKNLLYRFQLVELNNPISNRIATLKATIAIPTQRHLRSHQPSSSNASPQS
GASEETATPARGHPRYSVIRADLAIGERLSDEARERLSPTSQMITFPVGH
KPQVVVENTSSDERRDMEEIRELYEQKEIDKYIVIRNRDRAKNPQPAVHE
GNLRNGKYRGMEKPLRGDDEVDLGPIGVLQAKDCINPGKPDQWMHREWRK
LRMGVEEAEKKEQEEEERRQAAEKEEREEEERRQAAEKEEREEEERRQAA
EKEKREEKERRQAAEKEKREEKERRQAAEKEKREEKERRQAAEKREREEK
ERRQKEKERRQKAEARIREQRRQMREAGLPVGESSSSSRSSPSSNNSRFS
SSPGSRSSLSPKSPARKKRK*
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spliced messenger RNA

>Gchil884.t1 ID=Gchil884.t1|Name=Gchil884.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000017_pilon:792111..793523- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTTCAGAACAAAGTTCGATGCCTGCGGTAACACAGCAACCAGC
ATCACCCGCACCCTCTCCATTGCCTGCAGTAAATGAGAACTCGTCTCTGC
CGAGCACTCCACAGTCGCTCTTTGAAGAACAGTTTCACGTATCAGCACTA
GATCGCCGACAACTGGGAGCCCTACATCTTCTACCAGCCACAGCGGAGGA
GTTGTTTGACATTGACCGGTTTAAATACGGTGAGTACGACTTGGTGGACG
GCCTTCTGAACTGGCGCGGTATGTGGGAGAGCGACAGGAACAAGGAACAG
GCAAAAAACCTTTTGTATCGTTTCCAACTGGTCGAACTGAACAACCCTAT
TAGTAACCGTATTGCGACCTTAAAAGCTACTATCGCAATTCCAACCCAAC
GGCACCTCAGGTCCCATCAGCCATCATCTAGCAATGCTTCGCCTCAAAGC
GGGGCTTCTGAGGAAACTGCAACCCCTGCCCGTGGACATCCAAGGTACTC
CGTGATACGGGCCGACCTTGCAATTGGCGAAAGGCTCTCAGACGAAGCTC
GTGAGCGTTTATCACCCACTAGCCAGATGATAACGTTTCCTGTTGGGCAT
AAGCCACAAGTTGTAGTGGAAAACACGAGCTCGGATGAACGCAGAGATAT
GGAAGAAATACGAGAACTTTATGAACAAAAAGAAATTGACAAGTACATTG
TGATAAGAAACCGCGATCGTGCTAAGAACCCTCAGCCGGCTGTACACGAG
GGAAATCTTCGCAATGGGAAGTATAGGGGGATGGAGAAACCTCTTCGAGG
CGACGACGAAGTTGATCTTGGGCCCATTGGAGTACTTCAAGCAAAGGATT
GCATCAACCCTGGCAAACCGGATCAATGGATGCACAGGGAATGGAGGAAG
CTACGTATGGGGGTAGAGGAAGCAGAAAAGAAAGAGCAGGAAGAGGAGGA
GAGGAGGCAAGCGGCAGAAAAAGAAGAGCGGGAAGAGGAGGAGAGGAGAC
AAGCGGCAGAAAAAGAAGAGCGGGAAGAGGAGGAGAGGAGACAGGCGGCG
GAAAAGGAAAAGCGGGAAGAGAAGGAGAGGAGACAAGCGGCGGAAAAGGA
AAAGCGGGAAGAGAAGGAGAGGAGACAAGCGGCGGAAAAGGAAAAGCGGG
AAGAGAAGGAGAGGAGACAAGCGGCGGAAAAGAGAGAGCGGGAAGAGAAG
GAGAGGAGACAAAAAGAGAAGGAGAGGAGACAAAAAGCAGAAGCTCGGAT
AAGGGAGCAACGCAGGCAAATGAGAGAAGCAGGCCTTCCGGTGGGTGAAA
GCAGCTCAAGCTCGAGAAGCAGCCCGAGCTCAAATAACAGCCGTTTTTCG
AGCAGTCCGGGCTCAAGAAGCAGCTTGTCTCCGAAGAGTCCAGCTCGAAA
GAAGCGCAAGTGA
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protein sequence of Gchil884.t1

>Gchil884.t1 ID=Gchil884.t1|Name=Gchil884.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=471bp
MSSSEQSSMPAVTQQPASPAPSPLPAVNENSSLPSTPQSLFEEQFHVSAL
DRRQLGALHLLPATAEELFDIDRFKYGEYDLVDGLLNWRGMWESDRNKEQ
AKNLLYRFQLVELNNPISNRIATLKATIAIPTQRHLRSHQPSSSNASPQS
GASEETATPARGHPRYSVIRADLAIGERLSDEARERLSPTSQMITFPVGH
KPQVVVENTSSDERRDMEEIRELYEQKEIDKYIVIRNRDRAKNPQPAVHE
GNLRNGKYRGMEKPLRGDDEVDLGPIGVLQAKDCINPGKPDQWMHREWRK
LRMGVEEAEKKEQEEEERRQAAEKEEREEEERRQAAEKEEREEEERRQAA
EKEKREEKERRQAAEKEKREEKERRQAAEKEKREEKERRQAAEKREREEK
ERRQKEKERRQKAEARIREQRRQMREAGLPVGESSSSSRSSPSSNNSRFS
SSPGSRSSLSPKSPARKKRK*
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mRNA from alignment at tig00000017_pilon:792111..793523-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil884.t1 ID=Gchil884.t1|Name=Gchil884.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000017_pilon:792111..793523- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCTTCAGAACAAAGTTCGATGCCTGCGGTAACACAGCAACCAGC
ATCACCCGCACCCTCTCCATTGCCTGCAGTAAATGAGAACTCGTCTCTGC
CGAGCACTCCACAGTCGCTCTTTGAAGAACAGTTTCACGTATCAGCACTA
GATCGCCGACAACTGGGAGCCCTACATCTTCTACCAGCCACAGCGGAGGA
GTTGTTTGACATTGACCGGTTTAAATACGGTGAGTACGACTTGGTGGACG
GCCTTCTGAACTGGCGCGGTATGTGGGAGAGCGACAGGAACAAGGAACAG
GCAAAAAACCTTTTGTATCGTTTCCAACTGGTCGAACTGAACAACCCTAT
TAGTAACCGTATTGCGACCTTAAAAGCTACTATCGCAATTCCAACCCAAC
GGCACCTCAGGTCCCATCAGCCATCATCTAGCAATGCTTCGCCTCAAAGC
GGGGCTTCTGAGGAAACTGCAACCCCTGCCCGTGGACATCCAAGGTACTC
CGTGATACGGGCCGACCTTGCAATTGGCGAAAGGCTCTCAGACGAAGCTC
GTGAGCGTTTATCACCCACTAGCCAGATGATAACGTTTCCTGTTGGGCAT
AAGCCACAAGTTGTAGTGGAAAACACGAGCTCGGATGAACGCAGAGATAT
GGAAGAAATACGAGAACTTTATGAACAAAAAGAAATTGACAAGTACATTG
TGATAAGAAACCGCGATCGTGCTAAGAACCCTCAGCCGGCTGTACACGAG
GGAAATCTTCGCAATGGGAAGTATAGGGGGATGGAGAAACCTCTTCGAGG
CGACGACGAAGTTGATCTTGGGCCCATTGGAGTACTTCAAGCAAAGGATT
GCATCAACCCTGGCAAACCGGATCAATGGATGCACAGGGAATGGAGGAAG
CTACGTATGGGGGTAGAGGAAGCAGAAAAGAAAGAGCAGGAAGAGGAGGA
GAGGAGGCAAGCGGCAGAAAAAGAAGAGCGGGAAGAGGAGGAGAGGAGAC
AAGCGGCAGAAAAAGAAGAGCGGGAAGAGGAGGAGAGGAGACAGGCGGCG
GAAAAGGAAAAGCGGGAAGAGAAGGAGAGGAGACAAGCGGCGGAAAAGGA
AAAGCGGGAAGAGAAGGAGAGGAGACAAGCGGCGGAAAAGGAAAAGCGGG
AAGAGAAGGAGAGGAGACAAGCGGCGGAAAAGAGAGAGCGGGAAGAGAAG
GAGAGGAGACAAAAAGAGAAGGAGAGGAGACAAAAAGCAGAAGCTCGGAT
AAGGGAGCAACGCAGGCAAATGAGAGAAGCAGGCCTTCCGGTGGGTGAAA
GCAGCTCAAGCTCGAGAAGCAGCCCGAGCTCAAATAACAGCCGTTTTTCG
AGCAGTCCGGGCTCAAGAAGCAGCTTGTCTCCGAAGAGTCCAGCTCGAAA
GAAGCGCAAGTGA
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Coding sequence (CDS) from alignment at tig00000017_pilon:792111..793523-

>Gchil884.t1 ID=Gchil884.t1|Name=Gchil884.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000017_pilon:792111..793523- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGTCTTCAGAACAAAGTTCGATGCCTGCGGTAACACAGCAACCAGC
ATCACCCGCACCCTCTCCATTGCCTGCAGTAAATGAGAACTCGTCTCTGC
CGAGCACTCCACAGTCGCTCTTTGAAGAACAGTTTCACGTATCAGCACTA
GATCGCCGACAACTGGGAGCCCTACATCTTCTACCAGCCACAGCGGAGGA
GTTGTTTGACATTGACCGGTTTAAATACGGTGAGTACGACTTGGTGGACG
GCCTTCTGAACTGGCGCGGTATGTGGGAGAGCGACAGGAACAAGGAACAG
GCAAAAAACCTTTTGTATCGTTTCCAACTGGTCGAACTGAACAACCCTAT
TAGTAACCGTATTGCGACCTTAAAAGCTACTATCGCAATTCCAACCCAAC
GGCACCTCAGGTCCCATCAGCCATCATCTAGCAATGCTTCGCCTCAAAGC
GGGGCTTCTGAGGAAACTGCAACCCCTGCCCGTGGACATCCAAGGTACTC
CGTGATACGGGCCGACCTTGCAATTGGCGAAAGGCTCTCAGACGAAGCTC
GTGAGCGTTTATCACCCACTAGCCAGATGATAACGTTTCCTGTTGGGCAT
AAGCCACAAGTTGTAGTGGAAAACACGAGCTCGGATGAACGCAGAGATAT
GGAAGAAATACGAGAACTTTATGAACAAAAAGAAATTGACAAGTACATTG
TGATAAGAAACCGCGATCGTGCTAAGAACCCTCAGCCGGCTGTACACGAG
GGAAATCTTCGCAATGGGAAGTATAGGGGGATGGAGAAACCTCTTCGAGG
CGACGACGAAGTTGATCTTGGGCCCATTGGAGTACTTCAAGCAAAGGATT
GCATCAACCCTGGCAAACCGGATCAATGGATGCACAGGGAATGGAGGAAG
CTACGTATGGGGGTAGAGGAAGCAGAAAAGAAAGAGCAGGAAGAGGAGGA
GAGGAGGCAAGCGGCAGAAAAAGAAGAGCGGGAAGAGGAGGAGAGGAGAC
AAGCGGCAGAAAAAGAAGAGCGGGAAGAGGAGGAGAGGAGACAGGCGGCG
GAAAAGGAAAAGCGGGAAGAGAAGGAGAGGAGACAAGCGGCGGAAAAGGA
AAAGCGGGAAGAGAAGGAGAGGAGACAAGCGGCGGAAAAGGAAAAGCGGG
AAGAGAAGGAGAGGAGACAAGCGGCGGAAAAGAGAGAGCGGGAAGAGAAG
GAGAGGAGACAAAAAGAGAAGGAGAGGAGACAAAAAGCAGAAGCTCGGAT
AAGGGAGCAACGCAGGCAAATGAGAGAAGCAGGCCTTCCGGTGGGTGAAA
GCAGCTCAAGCTCGAGAAGCAGCCCGAGCTCAAATAACAGCCGTTTTTCG
AGCAGTCCGGGCTCAAGAAGCAGCTTGTCTCCGAAGAGTCCAGCTCGAAA
GAAGCGCAAGTGA
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