Gchil8614.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8614.t1
Unique NameGchil8614.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length503
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:617999..619507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8614Gchil8614Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 617999..619507 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8614.t1.start1Gchil8614.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 617999..618001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8614.t1.CDS1Gchil8614.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 617999..619507 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8614.t1.exon1Gchil8614.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 617999..619507 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8614.t1.stop1Gchil8614.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 619505..619507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8614.t1Gchil8614.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 617999..619507 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8614.t1 ID=Gchil8614.t1|Name=Gchil8614.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=503bp
MSKKHSTEDPLLAGLSRLSTSHASQTRASRPPRTDPSRPASAPHSANLPP
TTEKTSISERQNQSSHPPAPAHSRRRSQSALPTTSSNYPPLKPRTDRHSY
PTPHQSQQLPQKQFGNDSSSRQGTISIPHRLSGPEPWGADQPIVPTVMPL
NPLHHSEISELIEQATGLGRPIDGDPAAAGRLLQLIKSGSLPPRTICEHV
VAGSGPNEVKVNARALWLLHYLMVEGGPLVLPQVVQSSDGRNPPAVKLVL
KVLRSYGYETDADGLDVLHDDEKVRNLSFPTDKQVPEDALQKSRGERTYD
AAGVETYAIALGRKAWFHYRYSAVEVNYSLDRFYRAWHVENDCDPNRHES
NNEIFKLTLSKSALQDMYLLVCAMTAAAQRLQRGKLAFSLCLHALTDACN
AYSYALYLRRKVDNRDGQDFDLEPQREVLASMLRRWEQRGGKHLENVLHY
VEERVYDLVVGRSSVAVRPESRHRREIEIEVTSFDALHRAFQYLRQRSKC
AS*
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spliced messenger RNA

>Gchil8614.t1 ID=Gchil8614.t1|Name=Gchil8614.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000088_pilon:617999..619507+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAAGAAACATTCCACAGAAGACCCGCTTTTGGCAGGCCTAAGCCG
TCTGTCCACTTCCCATGCTTCGCAAACCCGCGCCTCACGTCCACCTCGCA
CCGACCCTTCGCGGCCGGCCTCGGCCCCACACAGCGCCAACCTTCCGCCC
ACAACTGAGAAAACTTCGATCTCCGAGCGCCAAAATCAATCCAGCCACCC
TCCTGCCCCCGCTCACTCACGCCGACGCAGCCAATCCGCACTTCCGACTA
CTTCCAGCAATTATCCACCTCTCAAACCCCGCACAGACAGGCATTCATAT
CCCACTCCTCATCAGTCTCAGCAGCTCCCACAGAAACAATTTGGTAACGA
TTCATCTTCCCGTCAAGGTACTATATCTATACCGCACCGTCTTTCCGGCC
CCGAGCCATGGGGAGCAGATCAGCCCATTGTCCCAACTGTGATGCCGTTG
AACCCATTGCACCACTCAGAAATAAGCGAGTTGATTGAACAAGCAACAGG
GTTAGGGCGTCCCATCGACGGTGATCCGGCTGCAGCGGGCCGACTTTTGC
AGCTCATAAAGAGTGGATCACTTCCACCTCGAACCATCTGTGAACATGTC
GTAGCCGGCTCCGGTCCGAATGAAGTGAAGGTCAATGCTCGCGCGTTATG
GCTCTTGCACTATTTGATGGTGGAAGGCGGGCCGCTCGTACTTCCCCAAG
TTGTGCAATCCTCCGACGGACGGAACCCGCCAGCTGTGAAACTTGTGCTT
AAAGTTTTACGTAGTTATGGATATGAAACTGATGCAGACGGACTCGACGT
GCTTCACGACGACGAAAAAGTGCGAAACCTATCATTTCCGACCGATAAGC
AAGTCCCCGAAGACGCCTTGCAAAAGTCCAGGGGGGAAAGAACGTACGAT
GCAGCAGGCGTGGAAACCTATGCGATTGCATTGGGGCGCAAGGCGTGGTT
TCACTACCGCTACTCTGCAGTAGAGGTCAACTATTCGCTGGACAGATTCT
ACCGCGCATGGCACGTTGAAAACGACTGTGATCCCAACAGGCACGAAAGC
AACAATGAAATTTTCAAACTAACTCTTTCAAAGAGTGCTTTACAAGACAT
GTATCTGTTGGTATGTGCAATGACAGCAGCAGCACAACGATTGCAACGAG
GAAAACTTGCATTTTCTCTTTGTCTCCACGCACTTACAGATGCTTGTAAC
GCGTATAGCTACGCCCTTTACCTTCGGAGAAAAGTGGACAATAGAGATGG
GCAGGATTTTGATTTGGAACCCCAACGAGAGGTACTAGCTAGCATGTTAA
GGCGGTGGGAGCAGCGCGGTGGAAAACACCTCGAAAACGTGCTACACTAC
GTTGAAGAACGTGTGTACGACTTAGTAGTGGGCAGAAGCTCGGTTGCGGT
ACGACCGGAAAGCCGTCACCGGCGGGAAATTGAAATCGAAGTCACATCGT
TTGACGCGCTGCACAGGGCGTTTCAGTATCTACGACAGCGTAGTAAATGT
GCAAGCTAA
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protein sequence of Gchil8614.t1

>Gchil8614.t1 ID=Gchil8614.t1|Name=Gchil8614.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=503bp
MSKKHSTEDPLLAGLSRLSTSHASQTRASRPPRTDPSRPASAPHSANLPP
TTEKTSISERQNQSSHPPAPAHSRRRSQSALPTTSSNYPPLKPRTDRHSY
PTPHQSQQLPQKQFGNDSSSRQGTISIPHRLSGPEPWGADQPIVPTVMPL
NPLHHSEISELIEQATGLGRPIDGDPAAAGRLLQLIKSGSLPPRTICEHV
VAGSGPNEVKVNARALWLLHYLMVEGGPLVLPQVVQSSDGRNPPAVKLVL
KVLRSYGYETDADGLDVLHDDEKVRNLSFPTDKQVPEDALQKSRGERTYD
AAGVETYAIALGRKAWFHYRYSAVEVNYSLDRFYRAWHVENDCDPNRHES
NNEIFKLTLSKSALQDMYLLVCAMTAAAQRLQRGKLAFSLCLHALTDACN
AYSYALYLRRKVDNRDGQDFDLEPQREVLASMLRRWEQRGGKHLENVLHY
VEERVYDLVVGRSSVAVRPESRHRREIEIEVTSFDALHRAFQYLRQRSKC
AS*
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mRNA from alignment at tig00000088_pilon:617999..619507+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8614.t1 ID=Gchil8614.t1|Name=Gchil8614.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1509bp|location=Sequence derived from alignment at tig00000088_pilon:617999..619507+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAAGAAACATTCCACAGAAGACCCGCTTTTGGCAGGCCTAAGCCG
TCTGTCCACTTCCCATGCTTCGCAAACCCGCGCCTCACGTCCACCTCGCA
CCGACCCTTCGCGGCCGGCCTCGGCCCCACACAGCGCCAACCTTCCGCCC
ACAACTGAGAAAACTTCGATCTCCGAGCGCCAAAATCAATCCAGCCACCC
TCCTGCCCCCGCTCACTCACGCCGACGCAGCCAATCCGCACTTCCGACTA
CTTCCAGCAATTATCCACCTCTCAAACCCCGCACAGACAGGCATTCATAT
CCCACTCCTCATCAGTCTCAGCAGCTCCCACAGAAACAATTTGGTAACGA
TTCATCTTCCCGTCAAGGTACTATATCTATACCGCACCGTCTTTCCGGCC
CCGAGCCATGGGGAGCAGATCAGCCCATTGTCCCAACTGTGATGCCGTTG
AACCCATTGCACCACTCAGAAATAAGCGAGTTGATTGAACAAGCAACAGG
GTTAGGGCGTCCCATCGACGGTGATCCGGCTGCAGCGGGCCGACTTTTGC
AGCTCATAAAGAGTGGATCACTTCCACCTCGAACCATCTGTGAACATGTC
GTAGCCGGCTCCGGTCCGAATGAAGTGAAGGTCAATGCTCGCGCGTTATG
GCTCTTGCACTATTTGATGGTGGAAGGCGGGCCGCTCGTACTTCCCCAAG
TTGTGCAATCCTCCGACGGACGGAACCCGCCAGCTGTGAAACTTGTGCTT
AAAGTTTTACGTAGTTATGGATATGAAACTGATGCAGACGGACTCGACGT
GCTTCACGACGACGAAAAAGTGCGAAACCTATCATTTCCGACCGATAAGC
AAGTCCCCGAAGACGCCTTGCAAAAGTCCAGGGGGGAAAGAACGTACGAT
GCAGCAGGCGTGGAAACCTATGCGATTGCATTGGGGCGCAAGGCGTGGTT
TCACTACCGCTACTCTGCAGTAGAGGTCAACTATTCGCTGGACAGATTCT
ACCGCGCATGGCACGTTGAAAACGACTGTGATCCCAACAGGCACGAAAGC
AACAATGAAATTTTCAAACTAACTCTTTCAAAGAGTGCTTTACAAGACAT
GTATCTGTTGGTATGTGCAATGACAGCAGCAGCACAACGATTGCAACGAG
GAAAACTTGCATTTTCTCTTTGTCTCCACGCACTTACAGATGCTTGTAAC
GCGTATAGCTACGCCCTTTACCTTCGGAGAAAAGTGGACAATAGAGATGG
GCAGGATTTTGATTTGGAACCCCAACGAGAGGTACTAGCTAGCATGTTAA
GGCGGTGGGAGCAGCGCGGTGGAAAACACCTCGAAAACGTGCTACACTAC
GTTGAAGAACGTGTGTACGACTTAGTAGTGGGCAGAAGCTCGGTTGCGGT
ACGACCGGAAAGCCGTCACCGGCGGGAAATTGAAATCGAAGTCACATCGT
TTGACGCGCTGCACAGGGCGTTTCAGTATCTACGACAGCGTAGTAAATGT
GCAAGCTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:617999..619507+

>Gchil8614.t1 ID=Gchil8614.t1|Name=Gchil8614.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1509bp|location=Sequence derived from alignment at tig00000088_pilon:617999..619507+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCAAGAAACATTCCACAGAAGACCCGCTTTTGGCAGGCCTAAGCCG
TCTGTCCACTTCCCATGCTTCGCAAACCCGCGCCTCACGTCCACCTCGCA
CCGACCCTTCGCGGCCGGCCTCGGCCCCACACAGCGCCAACCTTCCGCCC
ACAACTGAGAAAACTTCGATCTCCGAGCGCCAAAATCAATCCAGCCACCC
TCCTGCCCCCGCTCACTCACGCCGACGCAGCCAATCCGCACTTCCGACTA
CTTCCAGCAATTATCCACCTCTCAAACCCCGCACAGACAGGCATTCATAT
CCCACTCCTCATCAGTCTCAGCAGCTCCCACAGAAACAATTTGGTAACGA
TTCATCTTCCCGTCAAGGTACTATATCTATACCGCACCGTCTTTCCGGCC
CCGAGCCATGGGGAGCAGATCAGCCCATTGTCCCAACTGTGATGCCGTTG
AACCCATTGCACCACTCAGAAATAAGCGAGTTGATTGAACAAGCAACAGG
GTTAGGGCGTCCCATCGACGGTGATCCGGCTGCAGCGGGCCGACTTTTGC
AGCTCATAAAGAGTGGATCACTTCCACCTCGAACCATCTGTGAACATGTC
GTAGCCGGCTCCGGTCCGAATGAAGTGAAGGTCAATGCTCGCGCGTTATG
GCTCTTGCACTATTTGATGGTGGAAGGCGGGCCGCTCGTACTTCCCCAAG
TTGTGCAATCCTCCGACGGACGGAACCCGCCAGCTGTGAAACTTGTGCTT
AAAGTTTTACGTAGTTATGGATATGAAACTGATGCAGACGGACTCGACGT
GCTTCACGACGACGAAAAAGTGCGAAACCTATCATTTCCGACCGATAAGC
AAGTCCCCGAAGACGCCTTGCAAAAGTCCAGGGGGGAAAGAACGTACGAT
GCAGCAGGCGTGGAAACCTATGCGATTGCATTGGGGCGCAAGGCGTGGTT
TCACTACCGCTACTCTGCAGTAGAGGTCAACTATTCGCTGGACAGATTCT
ACCGCGCATGGCACGTTGAAAACGACTGTGATCCCAACAGGCACGAAAGC
AACAATGAAATTTTCAAACTAACTCTTTCAAAGAGTGCTTTACAAGACAT
GTATCTGTTGGTATGTGCAATGACAGCAGCAGCACAACGATTGCAACGAG
GAAAACTTGCATTTTCTCTTTGTCTCCACGCACTTACAGATGCTTGTAAC
GCGTATAGCTACGCCCTTTACCTTCGGAGAAAAGTGGACAATAGAGATGG
GCAGGATTTTGATTTGGAACCCCAACGAGAGGTACTAGCTAGCATGTTAA
GGCGGTGGGAGCAGCGCGGTGGAAAACACCTCGAAAACGTGCTACACTAC
GTTGAAGAACGTGTGTACGACTTAGTAGTGGGCAGAAGCTCGGTTGCGGT
ACGACCGGAAAGCCGTCACCGGCGGGAAATTGAAATCGAAGTCACATCGT
TTGACGCGCTGCACAGGGCGTTTCAGTATCTACGACAGCGTAGTAAATGT
GCAAGCTAA
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