Gchil8608.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8608.t1
Unique Name	Gchil8608.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	242

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:601914..602639 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ08359
PFAMs	Ribosomal_L22
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02890
KEGG Pathway	ko03010,map03010
KEGG Module	M00178,M00179
Evalue	4.59e-18
EggNOG OGs	COG0091@1\|root,KOG1711@2759\|Eukaryota,37NCG@33090\|Viridiplantae,3GDTI@35493\|Streptophyta
Description	Belongs to the universal ribosomal protein uL22 family
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8608	Gchil8608	Gracilaria chilensis NLEC103_M9 male	gene	tig00000088_pilon 601914..602639 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8608.t1.start1	Gchil8608.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000088_pilon 601914..601916 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8608.t1.CDS1	Gchil8608.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000088_pilon 601914..602639 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8608.t1.exon1	Gchil8608.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000088_pilon 601914..602639 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8608.t1.stop1	Gchil8608.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000088_pilon 602637..602639 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8608.t1	Gchil8608.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000088_pilon 601914..602639 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:601914..602639+
coding sequence from alignment at tig00000088_pilon:601914..602639+

mRNA sequence

>Gchil8608.t1 ID=Gchil8608.t1|Name=Gchil8608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=242bp
MLSFRSGFRMCASLRRLWHSSTPKQCAPEFLEIADERQDWTSSTTPKRVW
PQDLRGMEIKTAKARRLGINTSPHKLNLVAKLVRNLRIEEARRQLTGCKK
KTAPYVAATIQAAVKNATTFGMREDRLVVDEAFVGKGRYLRRIRPWHGKG
RWGLEHKKYAHLTVKVRELDEELWEARVMSKYFHIKRGNGRPDDENHPIH
SSSKVSWVSDLDDSFRKTKERITGLKALISSNEENSRTIQS*

spliced messenger RNA

>Gchil8608.t1 ID=Gchil8608.t1|Name=Gchil8608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000088_pilon:601914..602639+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTCTTTCAGATCGGGTTTTCGTATGTGTGCATCTCTTCGTCGCTT
GTGGCACTCCTCAACGCCGAAGCAATGCGCGCCAGAATTCCTTGAAATTG
CCGATGAGCGCCAAGACTGGACGTCGTCGACCACGCCGAAGCGGGTGTGG
CCTCAGGATTTGCGTGGGATGGAAATTAAAACAGCAAAGGCCCGACGTCT
TGGTATCAACACGTCCCCACACAAGCTAAACCTCGTCGCGAAGCTTGTAC
GCAACTTGCGAATCGAGGAGGCACGTCGACAGCTTACTGGATGCAAGAAG
AAGACAGCCCCATACGTTGCCGCTACCATCCAAGCAGCAGTCAAGAACGC
AACAACATTCGGTATGCGTGAAGATCGCCTCGTGGTCGATGAAGCTTTTG
TTGGGAAGGGTCGATATCTGCGTCGCATCCGACCGTGGCATGGCAAAGGC
CGATGGGGACTTGAACACAAAAAGTATGCACATCTTACTGTGAAAGTTAG
GGAGCTTGACGAAGAGTTGTGGGAGGCTAGAGTGATGTCCAAATACTTTC
ATATTAAAAGAGGGAATGGCAGGCCAGATGATGAAAACCACCCCATTCAT
TCAAGCTCAAAAGTGAGTTGGGTGAGCGATTTGGATGACAGCTTTCGCAA
GACAAAAGAAAGAATCACAGGGCTCAAAGCTCTAATCAGTTCTAACGAGG
AAAACTCAAGAACCATTCAGAGTTGA

protein sequence of Gchil8608.t1

>Gchil8608.t1 ID=Gchil8608.t1|Name=Gchil8608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=242bp
MLSFRSGFRMCASLRRLWHSSTPKQCAPEFLEIADERQDWTSSTTPKRVW
PQDLRGMEIKTAKARRLGINTSPHKLNLVAKLVRNLRIEEARRQLTGCKK
KTAPYVAATIQAAVKNATTFGMREDRLVVDEAFVGKGRYLRRIRPWHGKG
RWGLEHKKYAHLTVKVRELDEELWEARVMSKYFHIKRGNGRPDDENHPIH
SSSKVSWVSDLDDSFRKTKERITGLKALISSNEENSRTIQS*

mRNA from alignment at tig00000088_pilon:601914..602639+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8608.t1 ID=Gchil8608.t1|Name=Gchil8608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000088_pilon:601914..602639+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTCTTTCAGATCGGGTTTTCGTATGTGTGCATCTCTTCGTCGCTT
GTGGCACTCCTCAACGCCGAAGCAATGCGCGCCAGAATTCCTTGAAATTG
CCGATGAGCGCCAAGACTGGACGTCGTCGACCACGCCGAAGCGGGTGTGG
CCTCAGGATTTGCGTGGGATGGAAATTAAAACAGCAAAGGCCCGACGTCT
TGGTATCAACACGTCCCCACACAAGCTAAACCTCGTCGCGAAGCTTGTAC
GCAACTTGCGAATCGAGGAGGCACGTCGACAGCTTACTGGATGCAAGAAG
AAGACAGCCCCATACGTTGCCGCTACCATCCAAGCAGCAGTCAAGAACGC
AACAACATTCGGTATGCGTGAAGATCGCCTCGTGGTCGATGAAGCTTTTG
TTGGGAAGGGTCGATATCTGCGTCGCATCCGACCGTGGCATGGCAAAGGC
CGATGGGGACTTGAACACAAAAAGTATGCACATCTTACTGTGAAAGTTAG
GGAGCTTGACGAAGAGTTGTGGGAGGCTAGAGTGATGTCCAAATACTTTC
ATATTAAAAGAGGGAATGGCAGGCCAGATGATGAAAACCACCCCATTCAT
TCAAGCTCAAAAGTGAGTTGGGTGAGCGATTTGGATGACAGCTTTCGCAA
GACAAAAGAAAGAATCACAGGGCTCAAAGCTCTAATCAGTTCTAACGAGG
AAAACTCAAGAACCATTCAGAGTTGA

Coding sequence (CDS) from alignment at tig00000088_pilon:601914..602639+

>Gchil8608.t1 ID=Gchil8608.t1|Name=Gchil8608.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00000088_pilon:601914..602639+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGTCTTTCAGATCGGGTTTTCGTATGTGTGCATCTCTTCGTCGCTT
GTGGCACTCCTCAACGCCGAAGCAATGCGCGCCAGAATTCCTTGAAATTG
CCGATGAGCGCCAAGACTGGACGTCGTCGACCACGCCGAAGCGGGTGTGG
CCTCAGGATTTGCGTGGGATGGAAATTAAAACAGCAAAGGCCCGACGTCT
TGGTATCAACACGTCCCCACACAAGCTAAACCTCGTCGCGAAGCTTGTAC
GCAACTTGCGAATCGAGGAGGCACGTCGACAGCTTACTGGATGCAAGAAG
AAGACAGCCCCATACGTTGCCGCTACCATCCAAGCAGCAGTCAAGAACGC
AACAACATTCGGTATGCGTGAAGATCGCCTCGTGGTCGATGAAGCTTTTG
TTGGGAAGGGTCGATATCTGCGTCGCATCCGACCGTGGCATGGCAAAGGC
CGATGGGGACTTGAACACAAAAAGTATGCACATCTTACTGTGAAAGTTAG
GGAGCTTGACGAAGAGTTGTGGGAGGCTAGAGTGATGTCCAAATACTTTC
ATATTAAAAGAGGGAATGGCAGGCCAGATGATGAAAACCACCCCATTCAT
TCAAGCTCAAAAGTGAGTTGGGTGAGCGATTTGGATGACAGCTTTCGCAA
GACAAAAGAAAGAATCACAGGGCTCAAAGCTCTAATCAGTTCTAACGAGG
AAAACTCAAGAACCATTCAGAGTTGA