Gchil8592.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8592.t1
Unique NameGchil8592.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length577
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:457867..459597 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004988914.1
PFAMsPNMA,RVT_1,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33154|Opisthokonta
Evalue5.4e-97
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta
Descriptionretrotransposable element Tf2 155 kDa protein type 1-like
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8592Gchil8592Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 457867..459597 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8592.t1.stop1Gchil8592.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 457867..457869 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8592.t1.CDS1Gchil8592.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 457867..459597 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8592.t1.exon1Gchil8592.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 457867..459597 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8592.t1.start1Gchil8592.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 459595..459597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8592.t1Gchil8592.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 457867..459597 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8592.t1 ID=Gchil8592.t1|Name=Gchil8592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=577bp
MKNLRDAGINLKLKKCEFFTDSVKYLGHIIRHGQLSIDEVRVKSLKEVKH
PKTQTELQSFLGLCNVYRRFVPNFADIATPLNRLLTKGQPVELEPFGDAE
ASAFTALVNAVTSPPILALPNPGLPYEVDTDASAKQVGCALFQSSEDGER
HPIGYWSRSLNVHERNYSVSEKECLAVVWALDTLRPYLMGTRFKVHTDHA
CLRWLLEISEPSGRLMRWRLRLSEFDFEILYKKGKLNTQADALSRLGTTA
ETEPYEDDDIPCFMVSDLEGGAQPLTDDVCDDILVNESLDSPTGSFIPIS
PEEMIREQQLDPFCTRIRARLNGGFQLPFEDDDQGYLIRTVGPRPRIVVP
HTLQQRVLHLTHYLKVGAHPGGRKLYLTLTRDFYWPAMAFDCYAVKRACA
NFAKNDVKLRKHSKKLTLFPARAPLEFVAIDILGEFIRTPRGHRYLLVIS
DRFSKLTRTVPLKRITAATVAQAFLTHWVFVYGPPVQLLSDNGGQFASKF
FQDVCRILDVRNLFVTTYHPQRNGQVERFNRTILNALRSYVADHPKNWDL
YTDAITYAYNTQVHRVTSLSPFELVL*
back to top

spliced messenger RNA

>Gchil8592.t1 ID=Gchil8592.t1|Name=Gchil8592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000088_pilon:457867..459597- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAACCTCCGCGACGCGGGAATCAACTTGAAACTCAAGAAGTGCGA
GTTTTTCACCGATTCGGTTAAATATCTGGGTCATATCATCCGTCACGGAC
AGCTTTCAATCGATGAAGTACGAGTGAAATCCTTGAAGGAAGTAAAACAC
CCGAAAACTCAAACGGAGTTGCAATCCTTCTTAGGTCTGTGTAACGTGTA
TCGCCGATTCGTCCCGAACTTTGCGGATATTGCCACCCCCCTCAACAGGC
TCCTGACGAAGGGACAACCAGTTGAACTGGAACCTTTTGGCGACGCGGAA
GCGTCTGCCTTCACGGCACTGGTGAATGCCGTAACATCACCGCCAATCTT
GGCTCTACCCAATCCTGGGCTCCCTTACGAAGTGGACACCGATGCTAGTG
CAAAACAAGTAGGGTGTGCACTGTTCCAATCCTCTGAGGATGGTGAACGT
CACCCTATTGGGTACTGGTCACGTTCCCTGAATGTCCATGAAAGGAACTA
CTCGGTCTCCGAGAAAGAATGTTTAGCCGTCGTGTGGGCCTTAGATACAC
TTCGCCCCTATCTGATGGGTACTCGTTTCAAAGTCCATACGGACCACGCA
TGCTTGCGTTGGCTCCTGGAGATCTCCGAACCCTCGGGCCGCCTTATGCG
CTGGCGTCTCCGACTGTCGGAATTCGATTTTGAGATCCTGTACAAGAAAG
GGAAGCTGAACACTCAGGCTGATGCACTATCCCGCTTGGGAACCACAGCG
GAAACGGAACCCTACGAGGACGATGACATCCCATGTTTTATGGTATCGGA
CCTCGAGGGAGGAGCTCAACCACTGACGGATGATGTTTGTGACGATATAC
TCGTCAACGAGAGTCTGGATTCGCCGACCGGCTCTTTTATACCAATCTCT
CCAGAGGAGATGATACGCGAGCAACAGCTCGACCCATTCTGTACACGGAT
TCGGGCTCGCCTCAACGGAGGATTTCAGTTACCTTTCGAGGACGACGATC
AGGGTTACCTAATCAGGACCGTTGGACCTCGCCCGAGGATAGTGGTGCCG
CACACTCTACAACAGAGGGTATTACACCTCACTCACTATTTGAAGGTTGG
CGCCCACCCCGGGGGAAGAAAACTGTACCTCACGTTGACAAGGGACTTTT
ACTGGCCGGCAATGGCATTCGATTGTTACGCCGTCAAACGGGCCTGCGCC
AATTTCGCCAAGAATGACGTCAAACTTCGGAAGCACTCTAAGAAGTTGAC
GCTGTTCCCGGCACGGGCTCCACTCGAATTCGTGGCCATAGACATCCTAG
GGGAGTTTATCAGAACGCCCCGAGGTCATCGGTATCTGCTTGTCATTTCT
GACAGATTCTCTAAGTTAACGAGAACTGTGCCGCTGAAGCGGATCACCGC
CGCTACCGTCGCACAAGCGTTCCTGACCCATTGGGTGTTCGTATATGGAC
CGCCGGTGCAGTTGTTATCCGACAACGGAGGGCAATTCGCATCAAAGTTC
TTTCAAGATGTATGTCGAATCCTTGATGTAAGGAATTTATTTGTTACTAC
GTATCACCCTCAGAGGAATGGCCAGGTGGAGAGGTTTAACCGCACGATAC
TCAACGCTTTGAGATCGTATGTTGCGGATCACCCCAAAAATTGGGACTTG
TACACAGACGCTATCACGTATGCATACAACACCCAGGTACATCGGGTTAC
ATCTTTATCCCCATTCGAACTGGTACTGTAG
back to top

protein sequence of Gchil8592.t1

>Gchil8592.t1 ID=Gchil8592.t1|Name=Gchil8592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=577bp
MKNLRDAGINLKLKKCEFFTDSVKYLGHIIRHGQLSIDEVRVKSLKEVKH
PKTQTELQSFLGLCNVYRRFVPNFADIATPLNRLLTKGQPVELEPFGDAE
ASAFTALVNAVTSPPILALPNPGLPYEVDTDASAKQVGCALFQSSEDGER
HPIGYWSRSLNVHERNYSVSEKECLAVVWALDTLRPYLMGTRFKVHTDHA
CLRWLLEISEPSGRLMRWRLRLSEFDFEILYKKGKLNTQADALSRLGTTA
ETEPYEDDDIPCFMVSDLEGGAQPLTDDVCDDILVNESLDSPTGSFIPIS
PEEMIREQQLDPFCTRIRARLNGGFQLPFEDDDQGYLIRTVGPRPRIVVP
HTLQQRVLHLTHYLKVGAHPGGRKLYLTLTRDFYWPAMAFDCYAVKRACA
NFAKNDVKLRKHSKKLTLFPARAPLEFVAIDILGEFIRTPRGHRYLLVIS
DRFSKLTRTVPLKRITAATVAQAFLTHWVFVYGPPVQLLSDNGGQFASKF
FQDVCRILDVRNLFVTTYHPQRNGQVERFNRTILNALRSYVADHPKNWDL
YTDAITYAYNTQVHRVTSLSPFELVL*
back to top

mRNA from alignment at tig00000088_pilon:457867..459597-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8592.t1 ID=Gchil8592.t1|Name=Gchil8592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00000088_pilon:457867..459597- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAACCTCCGCGACGCGGGAATCAACTTGAAACTCAAGAAGTGCGA
GTTTTTCACCGATTCGGTTAAATATCTGGGTCATATCATCCGTCACGGAC
AGCTTTCAATCGATGAAGTACGAGTGAAATCCTTGAAGGAAGTAAAACAC
CCGAAAACTCAAACGGAGTTGCAATCCTTCTTAGGTCTGTGTAACGTGTA
TCGCCGATTCGTCCCGAACTTTGCGGATATTGCCACCCCCCTCAACAGGC
TCCTGACGAAGGGACAACCAGTTGAACTGGAACCTTTTGGCGACGCGGAA
GCGTCTGCCTTCACGGCACTGGTGAATGCCGTAACATCACCGCCAATCTT
GGCTCTACCCAATCCTGGGCTCCCTTACGAAGTGGACACCGATGCTAGTG
CAAAACAAGTAGGGTGTGCACTGTTCCAATCCTCTGAGGATGGTGAACGT
CACCCTATTGGGTACTGGTCACGTTCCCTGAATGTCCATGAAAGGAACTA
CTCGGTCTCCGAGAAAGAATGTTTAGCCGTCGTGTGGGCCTTAGATACAC
TTCGCCCCTATCTGATGGGTACTCGTTTCAAAGTCCATACGGACCACGCA
TGCTTGCGTTGGCTCCTGGAGATCTCCGAACCCTCGGGCCGCCTTATGCG
CTGGCGTCTCCGACTGTCGGAATTCGATTTTGAGATCCTGTACAAGAAAG
GGAAGCTGAACACTCAGGCTGATGCACTATCCCGCTTGGGAACCACAGCG
GAAACGGAACCCTACGAGGACGATGACATCCCATGTTTTATGGTATCGGA
CCTCGAGGGAGGAGCTCAACCACTGACGGATGATGTTTGTGACGATATAC
TCGTCAACGAGAGTCTGGATTCGCCGACCGGCTCTTTTATACCAATCTCT
CCAGAGGAGATGATACGCGAGCAACAGCTCGACCCATTCTGTACACGGAT
TCGGGCTCGCCTCAACGGAGGATTTCAGTTACCTTTCGAGGACGACGATC
AGGGTTACCTAATCAGGACCGTTGGACCTCGCCCGAGGATAGTGGTGCCG
CACACTCTACAACAGAGGGTATTACACCTCACTCACTATTTGAAGGTTGG
CGCCCACCCCGGGGGAAGAAAACTGTACCTCACGTTGACAAGGGACTTTT
ACTGGCCGGCAATGGCATTCGATTGTTACGCCGTCAAACGGGCCTGCGCC
AATTTCGCCAAGAATGACGTCAAACTTCGGAAGCACTCTAAGAAGTTGAC
GCTGTTCCCGGCACGGGCTCCACTCGAATTCGTGGCCATAGACATCCTAG
GGGAGTTTATCAGAACGCCCCGAGGTCATCGGTATCTGCTTGTCATTTCT
GACAGATTCTCTAAGTTAACGAGAACTGTGCCGCTGAAGCGGATCACCGC
CGCTACCGTCGCACAAGCGTTCCTGACCCATTGGGTGTTCGTATATGGAC
CGCCGGTGCAGTTGTTATCCGACAACGGAGGGCAATTCGCATCAAAGTTC
TTTCAAGATGTATGTCGAATCCTTGATGTAAGGAATTTATTTGTTACTAC
GTATCACCCTCAGAGGAATGGCCAGGTGGAGAGGTTTAACCGCACGATAC
TCAACGCTTTGAGATCGTATGTTGCGGATCACCCCAAAAATTGGGACTTG
TACACAGACGCTATCACGTATGCATACAACACCCAGGTACATCGGGTTAC
ATCTTTATCCCCATTCGAACTGGTACTGTAG
back to top

Coding sequence (CDS) from alignment at tig00000088_pilon:457867..459597-

>Gchil8592.t1 ID=Gchil8592.t1|Name=Gchil8592.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1731bp|location=Sequence derived from alignment at tig00000088_pilon:457867..459597- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAACCTCCGCGACGCGGGAATCAACTTGAAACTCAAGAAGTGCGA
GTTTTTCACCGATTCGGTTAAATATCTGGGTCATATCATCCGTCACGGAC
AGCTTTCAATCGATGAAGTACGAGTGAAATCCTTGAAGGAAGTAAAACAC
CCGAAAACTCAAACGGAGTTGCAATCCTTCTTAGGTCTGTGTAACGTGTA
TCGCCGATTCGTCCCGAACTTTGCGGATATTGCCACCCCCCTCAACAGGC
TCCTGACGAAGGGACAACCAGTTGAACTGGAACCTTTTGGCGACGCGGAA
GCGTCTGCCTTCACGGCACTGGTGAATGCCGTAACATCACCGCCAATCTT
GGCTCTACCCAATCCTGGGCTCCCTTACGAAGTGGACACCGATGCTAGTG
CAAAACAAGTAGGGTGTGCACTGTTCCAATCCTCTGAGGATGGTGAACGT
CACCCTATTGGGTACTGGTCACGTTCCCTGAATGTCCATGAAAGGAACTA
CTCGGTCTCCGAGAAAGAATGTTTAGCCGTCGTGTGGGCCTTAGATACAC
TTCGCCCCTATCTGATGGGTACTCGTTTCAAAGTCCATACGGACCACGCA
TGCTTGCGTTGGCTCCTGGAGATCTCCGAACCCTCGGGCCGCCTTATGCG
CTGGCGTCTCCGACTGTCGGAATTCGATTTTGAGATCCTGTACAAGAAAG
GGAAGCTGAACACTCAGGCTGATGCACTATCCCGCTTGGGAACCACAGCG
GAAACGGAACCCTACGAGGACGATGACATCCCATGTTTTATGGTATCGGA
CCTCGAGGGAGGAGCTCAACCACTGACGGATGATGTTTGTGACGATATAC
TCGTCAACGAGAGTCTGGATTCGCCGACCGGCTCTTTTATACCAATCTCT
CCAGAGGAGATGATACGCGAGCAACAGCTCGACCCATTCTGTACACGGAT
TCGGGCTCGCCTCAACGGAGGATTTCAGTTACCTTTCGAGGACGACGATC
AGGGTTACCTAATCAGGACCGTTGGACCTCGCCCGAGGATAGTGGTGCCG
CACACTCTACAACAGAGGGTATTACACCTCACTCACTATTTGAAGGTTGG
CGCCCACCCCGGGGGAAGAAAACTGTACCTCACGTTGACAAGGGACTTTT
ACTGGCCGGCAATGGCATTCGATTGTTACGCCGTCAAACGGGCCTGCGCC
AATTTCGCCAAGAATGACGTCAAACTTCGGAAGCACTCTAAGAAGTTGAC
GCTGTTCCCGGCACGGGCTCCACTCGAATTCGTGGCCATAGACATCCTAG
GGGAGTTTATCAGAACGCCCCGAGGTCATCGGTATCTGCTTGTCATTTCT
GACAGATTCTCTAAGTTAACGAGAACTGTGCCGCTGAAGCGGATCACCGC
CGCTACCGTCGCACAAGCGTTCCTGACCCATTGGGTGTTCGTATATGGAC
CGCCGGTGCAGTTGTTATCCGACAACGGAGGGCAATTCGCATCAAAGTTC
TTTCAAGATGTATGTCGAATCCTTGATGTAAGGAATTTATTTGTTACTAC
GTATCACCCTCAGAGGAATGGCCAGGTGGAGAGGTTTAACCGCACGATAC
TCAACGCTTTGAGATCGTATGTTGCGGATCACCCCAAAAATTGGGACTTG
TACACAGACGCTATCACGTATGCATACAACACCCAGGTACATCGGGTTAC
ATCTTTATCCCCATTCGAACTGGTACTGTAG
back to top