Gchil8312.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8312.t1
Unique NameGchil8312.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length822
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1484975..1487440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8312Gchil8312Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1484975..1487440 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8312.t1.stop1Gchil8312.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1484975..1484977 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8312.t1.CDS1Gchil8312.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1484975..1487440 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8312.t1.exon1Gchil8312.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1484975..1487440 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8312.t1.start1Gchil8312.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1487438..1487440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8312.t1Gchil8312.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1484975..1487440 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8312.t1 ID=Gchil8312.t1|Name=Gchil8312.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=822bp
MDISVTPSLVQSDISAVAKHNHSIVLSCFASHTHTSSSLLLATRNQQQWK
TSPISHALPNVSHFKHAHMSFGTQLAHIYVSLPDVSNHIFVLSRGNASTE
YHLHNTLQTSFESPVLAMCNVCQPASTPDQPRLFTVLVSERGQVAVVHDS
TGEPLLCDKSGFNLSLEHVLNVSSTGNNLVSVIGRTKGCLHLYILRLRHL
QTSDSIELSCSAPVLISEPSEHPSNLPGTRQTRIIDIALKSRSLCVLYEG
GHLCFFELRPSAASVSPAANGLDFFSAPFQATPKSPQLAAVMYHALVLRA
SQSPQASPRAGDGGAPGGFVESVWRDFFVVGYGRFISVWDQQYVCGHGFA
LVDHDIRRICATPTDAGEATFVSDRGLHELSISNRTASGAVSLAMVLKRK
ALCDEVVERVTLGMMKAPLQSHPLSIAPIKAAADADSDSTKRFQEYVSGE
DDREDSIIRELLTKSKTPTAESVLSLISDCTNRDRGVRHDSYNMGLKKLP
SERLAAVSTARCLYELHCGQVKFLVPLVDMLGTGVVSSEAVLAVADVSDS
WDMGIDRESFRMNSIIDPLMSPLHYSYALEAVVRAVADLPEQDIVRVMRH
AIHLADAAKIEEGNGDMLSTKRSHKQTAHVRLERARRLFEVCLECCTDTD
QMIRAVRRLPFSDIITFLNHFRTYLTSSTAVTAVEESTRTELPKALKALQ
FGAVEVAFGVDSAVSFRGIRKWVDNERLTKRKRRAFLMKGCISWACCTID
AHLSTLILDESGRKLAEQLLQAVKERRKESQGLKELQGLTGHLVNKKGVP
SGPDALYNTRVVLVPRDAALL*
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spliced messenger RNA

>Gchil8312.t1 ID=Gchil8312.t1|Name=Gchil8312.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2466bp|location=Sequence derived from alignment at tig00004384_pilon:1484975..1487440- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATTTCGGTGACTCCCTCTTTGGTGCAGAGTGATATCTCCGCTGT
CGCCAAACACAACCACTCCATCGTGTTGTCTTGCTTCGCCTCACATACCC
ACACCTCTTCCTCCCTCTTACTCGCAACACGCAACCAACAGCAATGGAAA
ACCTCCCCCATCTCCCACGCGCTGCCCAATGTGTCACATTTCAAACACGC
CCACATGAGCTTTGGAACCCAACTTGCTCACATATATGTCTCCTTGCCAG
ACGTGAGCAACCATATTTTCGTCCTGTCTCGGGGCAACGCGTCCACTGAG
TACCATCTTCACAACACATTGCAAACCAGCTTTGAATCACCCGTGCTCGC
CATGTGCAACGTATGCCAACCCGCCTCCACCCCCGATCAGCCCCGCCTCT
TCACCGTGCTTGTTTCGGAACGCGGCCAAGTCGCCGTCGTTCATGATAGT
ACCGGCGAGCCATTGCTATGCGACAAGAGTGGCTTCAACCTTAGTCTCGA
GCACGTTTTGAACGTTTCAAGCACGGGCAACAATCTTGTTTCCGTCATTG
GTCGCACGAAAGGCTGCCTTCATTTATACATTTTACGCCTTCGTCACTTG
CAAACTTCCGACTCTATCGAGCTGTCCTGTTCGGCCCCAGTCTTGATTTC
TGAACCCTCGGAACACCCATCGAACCTGCCCGGCACCCGACAAACGCGAA
TCATAGACATCGCCCTCAAGTCGCGCAGCCTGTGTGTGCTGTATGAGGGG
GGTCATCTCTGTTTCTTTGAACTGCGACCGAGCGCCGCGTCTGTTTCACC
CGCTGCAAATGGTCTCGACTTCTTTTCGGCCCCGTTTCAAGCCACGCCCA
AATCGCCCCAACTAGCAGCTGTCATGTATCACGCACTTGTCCTACGTGCG
TCCCAGTCACCGCAAGCTTCTCCCCGCGCGGGGGATGGAGGGGCACCCGG
TGGTTTTGTGGAGAGTGTTTGGCGCGATTTCTTTGTCGTGGGCTACGGCC
GTTTCATTTCGGTTTGGGACCAGCAGTATGTTTGTGGTCACGGTTTTGCA
CTCGTCGATCATGATATCCGCCGAATTTGTGCCACACCCACGGATGCTGG
TGAGGCCACCTTTGTATCCGATCGCGGCCTCCATGAGCTTTCCATATCGA
ACCGCACCGCTTCAGGCGCCGTAAGCTTGGCAATGGTGCTCAAGAGAAAG
GCGCTTTGCGATGAGGTGGTGGAGAGAGTTACTCTCGGTATGATGAAAGC
GCCGCTTCAAAGTCATCCCTTGTCAATCGCCCCTATCAAGGCGGCCGCCG
ATGCGGACAGCGACTCGACCAAACGGTTTCAGGAGTATGTTTCGGGCGAG
GATGACAGGGAGGACAGTATTATTCGAGAGTTGCTCACCAAGTCTAAGAC
GCCTACTGCCGAATCTGTGCTCTCGCTTATCAGCGATTGTACCAATCGCG
ACCGTGGCGTGCGGCACGATTCGTACAATATGGGCTTGAAAAAGCTTCCC
AGTGAGCGATTGGCGGCCGTATCAACTGCCAGATGTTTGTACGAGCTGCA
TTGTGGTCAGGTCAAGTTTTTGGTGCCACTGGTGGACATGCTGGGAACGG
GCGTTGTGTCAAGTGAAGCCGTTTTGGCAGTGGCGGATGTGTCCGACTCA
TGGGACATGGGCATCGACAGAGAATCTTTCCGAATGAATTCAATCATCGA
TCCGCTGATGAGTCCCTTGCATTATTCGTATGCGCTGGAGGCCGTAGTGA
GAGCCGTAGCAGACTTGCCGGAGCAAGATATTGTCAGGGTCATGAGACAT
GCCATTCATCTGGCCGACGCGGCAAAGATTGAGGAAGGCAACGGCGACAT
GTTGTCAACTAAGCGCTCTCACAAGCAGACCGCACACGTAAGGCTGGAAC
GCGCGAGACGTTTGTTTGAAGTCTGTCTCGAATGTTGTACGGACACGGAT
CAAATGATCCGCGCAGTGCGAAGGCTGCCTTTCAGCGATATTATAACATT
TCTTAACCACTTTAGGACATATCTAACTTCATCAACAGCTGTGACAGCTG
TGGAGGAGTCCACGCGAACTGAGCTGCCGAAAGCGCTGAAGGCGTTGCAA
TTCGGCGCGGTGGAGGTTGCGTTCGGGGTGGATTCGGCTGTGTCGTTCAG
AGGAATTAGAAAATGGGTTGACAATGAGAGGTTAACAAAACGAAAACGAA
GGGCATTTTTGATGAAAGGGTGTATCTCGTGGGCTTGTTGCACCATCGAC
GCACATCTATCCACACTAATTCTAGATGAATCGGGACGTAAGCTTGCCGA
ACAACTGCTGCAGGCGGTGAAGGAGAGAAGAAAAGAGTCGCAGGGTCTCA
AAGAGCTTCAAGGACTGACAGGGCATTTGGTGAACAAGAAGGGCGTACCC
TCTGGGCCAGATGCCTTGTACAACACGAGAGTGGTATTAGTACCACGCGA
TGCAGCATTGCTTTAG
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protein sequence of Gchil8312.t1

>Gchil8312.t1 ID=Gchil8312.t1|Name=Gchil8312.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=822bp
MDISVTPSLVQSDISAVAKHNHSIVLSCFASHTHTSSSLLLATRNQQQWK
TSPISHALPNVSHFKHAHMSFGTQLAHIYVSLPDVSNHIFVLSRGNASTE
YHLHNTLQTSFESPVLAMCNVCQPASTPDQPRLFTVLVSERGQVAVVHDS
TGEPLLCDKSGFNLSLEHVLNVSSTGNNLVSVIGRTKGCLHLYILRLRHL
QTSDSIELSCSAPVLISEPSEHPSNLPGTRQTRIIDIALKSRSLCVLYEG
GHLCFFELRPSAASVSPAANGLDFFSAPFQATPKSPQLAAVMYHALVLRA
SQSPQASPRAGDGGAPGGFVESVWRDFFVVGYGRFISVWDQQYVCGHGFA
LVDHDIRRICATPTDAGEATFVSDRGLHELSISNRTASGAVSLAMVLKRK
ALCDEVVERVTLGMMKAPLQSHPLSIAPIKAAADADSDSTKRFQEYVSGE
DDREDSIIRELLTKSKTPTAESVLSLISDCTNRDRGVRHDSYNMGLKKLP
SERLAAVSTARCLYELHCGQVKFLVPLVDMLGTGVVSSEAVLAVADVSDS
WDMGIDRESFRMNSIIDPLMSPLHYSYALEAVVRAVADLPEQDIVRVMRH
AIHLADAAKIEEGNGDMLSTKRSHKQTAHVRLERARRLFEVCLECCTDTD
QMIRAVRRLPFSDIITFLNHFRTYLTSSTAVTAVEESTRTELPKALKALQ
FGAVEVAFGVDSAVSFRGIRKWVDNERLTKRKRRAFLMKGCISWACCTID
AHLSTLILDESGRKLAEQLLQAVKERRKESQGLKELQGLTGHLVNKKGVP
SGPDALYNTRVVLVPRDAALL*
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mRNA from alignment at tig00004384_pilon:1484975..1487440-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8312.t1 ID=Gchil8312.t1|Name=Gchil8312.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2466bp|location=Sequence derived from alignment at tig00004384_pilon:1484975..1487440- (Gracilaria chilensis NLEC103_M9 male)
ATGGACATTTCGGTGACTCCCTCTTTGGTGCAGAGTGATATCTCCGCTGT
CGCCAAACACAACCACTCCATCGTGTTGTCTTGCTTCGCCTCACATACCC
ACACCTCTTCCTCCCTCTTACTCGCAACACGCAACCAACAGCAATGGAAA
ACCTCCCCCATCTCCCACGCGCTGCCCAATGTGTCACATTTCAAACACGC
CCACATGAGCTTTGGAACCCAACTTGCTCACATATATGTCTCCTTGCCAG
ACGTGAGCAACCATATTTTCGTCCTGTCTCGGGGCAACGCGTCCACTGAG
TACCATCTTCACAACACATTGCAAACCAGCTTTGAATCACCCGTGCTCGC
CATGTGCAACGTATGCCAACCCGCCTCCACCCCCGATCAGCCCCGCCTCT
TCACCGTGCTTGTTTCGGAACGCGGCCAAGTCGCCGTCGTTCATGATAGT
ACCGGCGAGCCATTGCTATGCGACAAGAGTGGCTTCAACCTTAGTCTCGA
GCACGTTTTGAACGTTTCAAGCACGGGCAACAATCTTGTTTCCGTCATTG
GTCGCACGAAAGGCTGCCTTCATTTATACATTTTACGCCTTCGTCACTTG
CAAACTTCCGACTCTATCGAGCTGTCCTGTTCGGCCCCAGTCTTGATTTC
TGAACCCTCGGAACACCCATCGAACCTGCCCGGCACCCGACAAACGCGAA
TCATAGACATCGCCCTCAAGTCGCGCAGCCTGTGTGTGCTGTATGAGGGG
GGTCATCTCTGTTTCTTTGAACTGCGACCGAGCGCCGCGTCTGTTTCACC
CGCTGCAAATGGTCTCGACTTCTTTTCGGCCCCGTTTCAAGCCACGCCCA
AATCGCCCCAACTAGCAGCTGTCATGTATCACGCACTTGTCCTACGTGCG
TCCCAGTCACCGCAAGCTTCTCCCCGCGCGGGGGATGGAGGGGCACCCGG
TGGTTTTGTGGAGAGTGTTTGGCGCGATTTCTTTGTCGTGGGCTACGGCC
GTTTCATTTCGGTTTGGGACCAGCAGTATGTTTGTGGTCACGGTTTTGCA
CTCGTCGATCATGATATCCGCCGAATTTGTGCCACACCCACGGATGCTGG
TGAGGCCACCTTTGTATCCGATCGCGGCCTCCATGAGCTTTCCATATCGA
ACCGCACCGCTTCAGGCGCCGTAAGCTTGGCAATGGTGCTCAAGAGAAAG
GCGCTTTGCGATGAGGTGGTGGAGAGAGTTACTCTCGGTATGATGAAAGC
GCCGCTTCAAAGTCATCCCTTGTCAATCGCCCCTATCAAGGCGGCCGCCG
ATGCGGACAGCGACTCGACCAAACGGTTTCAGGAGTATGTTTCGGGCGAG
GATGACAGGGAGGACAGTATTATTCGAGAGTTGCTCACCAAGTCTAAGAC
GCCTACTGCCGAATCTGTGCTCTCGCTTATCAGCGATTGTACCAATCGCG
ACCGTGGCGTGCGGCACGATTCGTACAATATGGGCTTGAAAAAGCTTCCC
AGTGAGCGATTGGCGGCCGTATCAACTGCCAGATGTTTGTACGAGCTGCA
TTGTGGTCAGGTCAAGTTTTTGGTGCCACTGGTGGACATGCTGGGAACGG
GCGTTGTGTCAAGTGAAGCCGTTTTGGCAGTGGCGGATGTGTCCGACTCA
TGGGACATGGGCATCGACAGAGAATCTTTCCGAATGAATTCAATCATCGA
TCCGCTGATGAGTCCCTTGCATTATTCGTATGCGCTGGAGGCCGTAGTGA
GAGCCGTAGCAGACTTGCCGGAGCAAGATATTGTCAGGGTCATGAGACAT
GCCATTCATCTGGCCGACGCGGCAAAGATTGAGGAAGGCAACGGCGACAT
GTTGTCAACTAAGCGCTCTCACAAGCAGACCGCACACGTAAGGCTGGAAC
GCGCGAGACGTTTGTTTGAAGTCTGTCTCGAATGTTGTACGGACACGGAT
CAAATGATCCGCGCAGTGCGAAGGCTGCCTTTCAGCGATATTATAACATT
TCTTAACCACTTTAGGACATATCTAACTTCATCAACAGCTGTGACAGCTG
TGGAGGAGTCCACGCGAACTGAGCTGCCGAAAGCGCTGAAGGCGTTGCAA
TTCGGCGCGGTGGAGGTTGCGTTCGGGGTGGATTCGGCTGTGTCGTTCAG
AGGAATTAGAAAATGGGTTGACAATGAGAGGTTAACAAAACGAAAACGAA
GGGCATTTTTGATGAAAGGGTGTATCTCGTGGGCTTGTTGCACCATCGAC
GCACATCTATCCACACTAATTCTAGATGAATCGGGACGTAAGCTTGCCGA
ACAACTGCTGCAGGCGGTGAAGGAGAGAAGAAAAGAGTCGCAGGGTCTCA
AAGAGCTTCAAGGACTGACAGGGCATTTGGTGAACAAGAAGGGCGTACCC
TCTGGGCCAGATGCCTTGTACAACACGAGAGTGGTATTAGTACCACGCGA
TGCAGCATTGCTTTAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:1484975..1487440-

>Gchil8312.t1 ID=Gchil8312.t1|Name=Gchil8312.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2466bp|location=Sequence derived from alignment at tig00004384_pilon:1484975..1487440- (Gracilaria chilensis NLEC103_M9 male)
ATGGACATTTCGGTGACTCCCTCTTTGGTGCAGAGTGATATCTCCGCTGT
CGCCAAACACAACCACTCCATCGTGTTGTCTTGCTTCGCCTCACATACCC
ACACCTCTTCCTCCCTCTTACTCGCAACACGCAACCAACAGCAATGGAAA
ACCTCCCCCATCTCCCACGCGCTGCCCAATGTGTCACATTTCAAACACGC
CCACATGAGCTTTGGAACCCAACTTGCTCACATATATGTCTCCTTGCCAG
ACGTGAGCAACCATATTTTCGTCCTGTCTCGGGGCAACGCGTCCACTGAG
TACCATCTTCACAACACATTGCAAACCAGCTTTGAATCACCCGTGCTCGC
CATGTGCAACGTATGCCAACCCGCCTCCACCCCCGATCAGCCCCGCCTCT
TCACCGTGCTTGTTTCGGAACGCGGCCAAGTCGCCGTCGTTCATGATAGT
ACCGGCGAGCCATTGCTATGCGACAAGAGTGGCTTCAACCTTAGTCTCGA
GCACGTTTTGAACGTTTCAAGCACGGGCAACAATCTTGTTTCCGTCATTG
GTCGCACGAAAGGCTGCCTTCATTTATACATTTTACGCCTTCGTCACTTG
CAAACTTCCGACTCTATCGAGCTGTCCTGTTCGGCCCCAGTCTTGATTTC
TGAACCCTCGGAACACCCATCGAACCTGCCCGGCACCCGACAAACGCGAA
TCATAGACATCGCCCTCAAGTCGCGCAGCCTGTGTGTGCTGTATGAGGGG
GGTCATCTCTGTTTCTTTGAACTGCGACCGAGCGCCGCGTCTGTTTCACC
CGCTGCAAATGGTCTCGACTTCTTTTCGGCCCCGTTTCAAGCCACGCCCA
AATCGCCCCAACTAGCAGCTGTCATGTATCACGCACTTGTCCTACGTGCG
TCCCAGTCACCGCAAGCTTCTCCCCGCGCGGGGGATGGAGGGGCACCCGG
TGGTTTTGTGGAGAGTGTTTGGCGCGATTTCTTTGTCGTGGGCTACGGCC
GTTTCATTTCGGTTTGGGACCAGCAGTATGTTTGTGGTCACGGTTTTGCA
CTCGTCGATCATGATATCCGCCGAATTTGTGCCACACCCACGGATGCTGG
TGAGGCCACCTTTGTATCCGATCGCGGCCTCCATGAGCTTTCCATATCGA
ACCGCACCGCTTCAGGCGCCGTAAGCTTGGCAATGGTGCTCAAGAGAAAG
GCGCTTTGCGATGAGGTGGTGGAGAGAGTTACTCTCGGTATGATGAAAGC
GCCGCTTCAAAGTCATCCCTTGTCAATCGCCCCTATCAAGGCGGCCGCCG
ATGCGGACAGCGACTCGACCAAACGGTTTCAGGAGTATGTTTCGGGCGAG
GATGACAGGGAGGACAGTATTATTCGAGAGTTGCTCACCAAGTCTAAGAC
GCCTACTGCCGAATCTGTGCTCTCGCTTATCAGCGATTGTACCAATCGCG
ACCGTGGCGTGCGGCACGATTCGTACAATATGGGCTTGAAAAAGCTTCCC
AGTGAGCGATTGGCGGCCGTATCAACTGCCAGATGTTTGTACGAGCTGCA
TTGTGGTCAGGTCAAGTTTTTGGTGCCACTGGTGGACATGCTGGGAACGG
GCGTTGTGTCAAGTGAAGCCGTTTTGGCAGTGGCGGATGTGTCCGACTCA
TGGGACATGGGCATCGACAGAGAATCTTTCCGAATGAATTCAATCATCGA
TCCGCTGATGAGTCCCTTGCATTATTCGTATGCGCTGGAGGCCGTAGTGA
GAGCCGTAGCAGACTTGCCGGAGCAAGATATTGTCAGGGTCATGAGACAT
GCCATTCATCTGGCCGACGCGGCAAAGATTGAGGAAGGCAACGGCGACAT
GTTGTCAACTAAGCGCTCTCACAAGCAGACCGCACACGTAAGGCTGGAAC
GCGCGAGACGTTTGTTTGAAGTCTGTCTCGAATGTTGTACGGACACGGAT
CAAATGATCCGCGCAGTGCGAAGGCTGCCTTTCAGCGATATTATAACATT
TCTTAACCACTTTAGGACATATCTAACTTCATCAACAGCTGTGACAGCTG
TGGAGGAGTCCACGCGAACTGAGCTGCCGAAAGCGCTGAAGGCGTTGCAA
TTCGGCGCGGTGGAGGTTGCGTTCGGGGTGGATTCGGCTGTGTCGTTCAG
AGGAATTAGAAAATGGGTTGACAATGAGAGGTTAACAAAACGAAAACGAA
GGGCATTTTTGATGAAAGGGTGTATCTCGTGGGCTTGTTGCACCATCGAC
GCACATCTATCCACACTAATTCTAGATGAATCGGGACGTAAGCTTGCCGA
ACAACTGCTGCAGGCGGTGAAGGAGAGAAGAAAAGAGTCGCAGGGTCTCA
AAGAGCTTCAAGGACTGACAGGGCATTTGGTGAACAAGAAGGGCGTACCC
TCTGGGCCAGATGCCTTGTACAACACGAGAGTGGTATTAGTACCACGCGA
TGCAGCATTGCTTTAG
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