Gchil8294.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8294.t1
Unique NameGchil8294.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length513
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1327668..1329206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706998.1
PFAMsSHMT
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00112,RC01583,RC02958
KEGG koko:K00600
KEGG ReactionR00945,R09099
KEGG Pathwayko00260,ko00460,ko00630,ko00670,ko00680,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko01523,map00260,map00460,map00630,map00670,map00680,map01100,map01110,map01120,map01130,map01200,map01230,map01523
KEGG ModuleM00140,M00141,M00346,M00532
Evalue1.3e-229
EggNOG OGsCOG0112@1|root,KOG2467@2759|Eukaryota
EC2.1.2.1
Descriptionglycine hydroxymethyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8294Gchil8294Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1327668..1329206 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8294.t1.start1Gchil8294.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1327668..1327670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8294.t1.CDS1Gchil8294.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1327668..1329206 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8294.t1.exon1Gchil8294.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1327668..1329206 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8294.t1.stop1Gchil8294.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1329204..1329206 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8294.t1Gchil8294.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1327668..1329206 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8294.t1 ID=Gchil8294.t1|Name=Gchil8294.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=513bp
MCTPAFTTPLPFLAPRSPSQSLCPLKFPSPSSSASNSRMPPKMVISRPKP
LIGHVPLNEQDPEVYHLVELEKSRQWRGLELIASENFTSTAVLQCLGSVF
TNKYSEGYPGARYYGGNEYVDQLEQLCRTRALAAFGLDSHQWAVNVQPYS
GSPANFAVYTALLKPHDRIMGLDLPSGGHLTHGFYTAKKRVSATSIYFES
LPYVVDPNTGRIDYDDLERRATAFRPKLIIAGGSAYAREWDYKRFRQIAD
ECGAYLLVDMAHISGLVATGVADSPFEYADVVSSTTHKSLRGPRSGIIFV
RKNALAALGQGVDMEAAINGAVFPSLQGGPHNHQIAALAVQLKEVATDHF
REYSKQVVRNARAMADQLMKHGYKLVTDGTDNHLVLWDLRPSGFSGSKAQ
LLFDKCSITLNKNAVHGDKSALSPGGVRIGSPALTSRGFTEDDFRKVADF
LHRGVQIGLNIQEKTGKKLVDYKPALEARPELESLRKDVEAFASSFDIPG
FDVEEMEYNQLE*
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spliced messenger RNA

>Gchil8294.t1 ID=Gchil8294.t1|Name=Gchil8294.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00004384_pilon:1327668..1329206+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCACGCCGGCGTTCACCACCCCGCTTCCGTTCTTGGCGCCCCGCTC
GCCTTCACAGTCTCTATGCCCGCTCAAGTTTCCTTCGCCTTCTTCTTCCG
CCTCCAATAGCAGAATGCCCCCGAAAATGGTTATCTCCCGTCCGAAACCC
CTCATCGGACACGTTCCGCTTAACGAACAGGACCCCGAAGTCTATCATCT
CGTCGAGCTCGAAAAGTCCCGCCAGTGGCGCGGCCTCGAGCTCATTGCAT
CCGAGAACTTCACCTCCACTGCCGTCCTACAGTGTCTCGGTTCCGTCTTC
ACCAACAAGTACTCGGAGGGCTACCCCGGCGCACGTTACTACGGCGGCAA
TGAATACGTCGATCAGCTCGAACAGTTGTGCAGAACGCGTGCCCTAGCCG
CCTTTGGTCTCGACTCGCACCAATGGGCCGTCAACGTCCAACCCTACTCC
GGATCGCCCGCCAATTTCGCCGTGTACACCGCCTTGCTTAAACCGCACGA
CCGCATCATGGGGCTCGACTTGCCTAGCGGCGGCCACCTCACGCACGGTT
TCTACACCGCAAAGAAGCGAGTATCGGCCACCAGTATTTATTTTGAAAGT
CTTCCGTACGTCGTTGACCCCAACACCGGCCGAATTGACTACGACGATCT
TGAGCGTCGTGCCACAGCCTTCCGTCCAAAACTCATCATCGCCGGCGGCA
GTGCGTACGCTCGCGAATGGGACTACAAACGATTTCGTCAAATTGCCGAT
GAATGCGGAGCTTATCTGCTTGTGGACATGGCCCATATTTCTGGTCTTGT
TGCCACGGGAGTGGCCGATAGTCCTTTCGAATACGCAGACGTAGTTTCTT
CTACCACCCACAAGTCGCTCCGTGGTCCTAGATCGGGAATCATCTTCGTC
AGGAAGAATGCTTTGGCCGCGCTTGGTCAAGGCGTCGACATGGAAGCCGC
GATCAATGGTGCTGTATTTCCCAGCTTGCAAGGAGGCCCGCACAATCACC
AAATAGCTGCCCTGGCTGTGCAGCTTAAAGAAGTTGCAACCGATCACTTT
CGGGAGTATTCGAAGCAAGTTGTGAGAAATGCCCGCGCCATGGCCGACCA
ACTCATGAAACACGGATACAAGCTTGTCACGGACGGCACCGATAACCATC
TTGTGCTCTGGGACCTAAGACCGTCAGGCTTCTCAGGGAGTAAAGCTCAG
TTGCTGTTTGATAAGTGTAGCATAACTCTCAACAAAAACGCGGTGCACGG
CGACAAAAGTGCCCTTAGCCCTGGCGGCGTTCGTATCGGATCCCCTGCTC
TCACCAGCAGAGGTTTTACAGAGGATGATTTCCGCAAGGTGGCCGACTTT
CTGCACAGAGGTGTCCAAATTGGTCTCAACATTCAAGAGAAAACCGGCAA
GAAACTTGTCGATTACAAGCCAGCACTGGAAGCCCGTCCAGAATTGGAAT
CCCTTCGCAAAGATGTCGAGGCATTTGCCTCGTCGTTTGATATTCCCGGC
TTTGACGTGGAGGAGATGGAGTATAATCAGCTGGAATGA
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protein sequence of Gchil8294.t1

>Gchil8294.t1 ID=Gchil8294.t1|Name=Gchil8294.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=513bp
MCTPAFTTPLPFLAPRSPSQSLCPLKFPSPSSSASNSRMPPKMVISRPKP
LIGHVPLNEQDPEVYHLVELEKSRQWRGLELIASENFTSTAVLQCLGSVF
TNKYSEGYPGARYYGGNEYVDQLEQLCRTRALAAFGLDSHQWAVNVQPYS
GSPANFAVYTALLKPHDRIMGLDLPSGGHLTHGFYTAKKRVSATSIYFES
LPYVVDPNTGRIDYDDLERRATAFRPKLIIAGGSAYAREWDYKRFRQIAD
ECGAYLLVDMAHISGLVATGVADSPFEYADVVSSTTHKSLRGPRSGIIFV
RKNALAALGQGVDMEAAINGAVFPSLQGGPHNHQIAALAVQLKEVATDHF
REYSKQVVRNARAMADQLMKHGYKLVTDGTDNHLVLWDLRPSGFSGSKAQ
LLFDKCSITLNKNAVHGDKSALSPGGVRIGSPALTSRGFTEDDFRKVADF
LHRGVQIGLNIQEKTGKKLVDYKPALEARPELESLRKDVEAFASSFDIPG
FDVEEMEYNQLE*
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mRNA from alignment at tig00004384_pilon:1327668..1329206+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8294.t1 ID=Gchil8294.t1|Name=Gchil8294.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1539bp|location=Sequence derived from alignment at tig00004384_pilon:1327668..1329206+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCACGCCGGCGTTCACCACCCCGCTTCCGTTCTTGGCGCCCCGCTC
GCCTTCACAGTCTCTATGCCCGCTCAAGTTTCCTTCGCCTTCTTCTTCCG
CCTCCAATAGCAGAATGCCCCCGAAAATGGTTATCTCCCGTCCGAAACCC
CTCATCGGACACGTTCCGCTTAACGAACAGGACCCCGAAGTCTATCATCT
CGTCGAGCTCGAAAAGTCCCGCCAGTGGCGCGGCCTCGAGCTCATTGCAT
CCGAGAACTTCACCTCCACTGCCGTCCTACAGTGTCTCGGTTCCGTCTTC
ACCAACAAGTACTCGGAGGGCTACCCCGGCGCACGTTACTACGGCGGCAA
TGAATACGTCGATCAGCTCGAACAGTTGTGCAGAACGCGTGCCCTAGCCG
CCTTTGGTCTCGACTCGCACCAATGGGCCGTCAACGTCCAACCCTACTCC
GGATCGCCCGCCAATTTCGCCGTGTACACCGCCTTGCTTAAACCGCACGA
CCGCATCATGGGGCTCGACTTGCCTAGCGGCGGCCACCTCACGCACGGTT
TCTACACCGCAAAGAAGCGAGTATCGGCCACCAGTATTTATTTTGAAAGT
CTTCCGTACGTCGTTGACCCCAACACCGGCCGAATTGACTACGACGATCT
TGAGCGTCGTGCCACAGCCTTCCGTCCAAAACTCATCATCGCCGGCGGCA
GTGCGTACGCTCGCGAATGGGACTACAAACGATTTCGTCAAATTGCCGAT
GAATGCGGAGCTTATCTGCTTGTGGACATGGCCCATATTTCTGGTCTTGT
TGCCACGGGAGTGGCCGATAGTCCTTTCGAATACGCAGACGTAGTTTCTT
CTACCACCCACAAGTCGCTCCGTGGTCCTAGATCGGGAATCATCTTCGTC
AGGAAGAATGCTTTGGCCGCGCTTGGTCAAGGCGTCGACATGGAAGCCGC
GATCAATGGTGCTGTATTTCCCAGCTTGCAAGGAGGCCCGCACAATCACC
AAATAGCTGCCCTGGCTGTGCAGCTTAAAGAAGTTGCAACCGATCACTTT
CGGGAGTATTCGAAGCAAGTTGTGAGAAATGCCCGCGCCATGGCCGACCA
ACTCATGAAACACGGATACAAGCTTGTCACGGACGGCACCGATAACCATC
TTGTGCTCTGGGACCTAAGACCGTCAGGCTTCTCAGGGAGTAAAGCTCAG
TTGCTGTTTGATAAGTGTAGCATAACTCTCAACAAAAACGCGGTGCACGG
CGACAAAAGTGCCCTTAGCCCTGGCGGCGTTCGTATCGGATCCCCTGCTC
TCACCAGCAGAGGTTTTACAGAGGATGATTTCCGCAAGGTGGCCGACTTT
CTGCACAGAGGTGTCCAAATTGGTCTCAACATTCAAGAGAAAACCGGCAA
GAAACTTGTCGATTACAAGCCAGCACTGGAAGCCCGTCCAGAATTGGAAT
CCCTTCGCAAAGATGTCGAGGCATTTGCCTCGTCGTTTGATATTCCCGGC
TTTGACGTGGAGGAGATGGAGTATAATCAGCTGGAATGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:1327668..1329206+

>Gchil8294.t1 ID=Gchil8294.t1|Name=Gchil8294.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1539bp|location=Sequence derived from alignment at tig00004384_pilon:1327668..1329206+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCACGCCGGCGTTCACCACCCCGCTTCCGTTCTTGGCGCCCCGCTC
GCCTTCACAGTCTCTATGCCCGCTCAAGTTTCCTTCGCCTTCTTCTTCCG
CCTCCAATAGCAGAATGCCCCCGAAAATGGTTATCTCCCGTCCGAAACCC
CTCATCGGACACGTTCCGCTTAACGAACAGGACCCCGAAGTCTATCATCT
CGTCGAGCTCGAAAAGTCCCGCCAGTGGCGCGGCCTCGAGCTCATTGCAT
CCGAGAACTTCACCTCCACTGCCGTCCTACAGTGTCTCGGTTCCGTCTTC
ACCAACAAGTACTCGGAGGGCTACCCCGGCGCACGTTACTACGGCGGCAA
TGAATACGTCGATCAGCTCGAACAGTTGTGCAGAACGCGTGCCCTAGCCG
CCTTTGGTCTCGACTCGCACCAATGGGCCGTCAACGTCCAACCCTACTCC
GGATCGCCCGCCAATTTCGCCGTGTACACCGCCTTGCTTAAACCGCACGA
CCGCATCATGGGGCTCGACTTGCCTAGCGGCGGCCACCTCACGCACGGTT
TCTACACCGCAAAGAAGCGAGTATCGGCCACCAGTATTTATTTTGAAAGT
CTTCCGTACGTCGTTGACCCCAACACCGGCCGAATTGACTACGACGATCT
TGAGCGTCGTGCCACAGCCTTCCGTCCAAAACTCATCATCGCCGGCGGCA
GTGCGTACGCTCGCGAATGGGACTACAAACGATTTCGTCAAATTGCCGAT
GAATGCGGAGCTTATCTGCTTGTGGACATGGCCCATATTTCTGGTCTTGT
TGCCACGGGAGTGGCCGATAGTCCTTTCGAATACGCAGACGTAGTTTCTT
CTACCACCCACAAGTCGCTCCGTGGTCCTAGATCGGGAATCATCTTCGTC
AGGAAGAATGCTTTGGCCGCGCTTGGTCAAGGCGTCGACATGGAAGCCGC
GATCAATGGTGCTGTATTTCCCAGCTTGCAAGGAGGCCCGCACAATCACC
AAATAGCTGCCCTGGCTGTGCAGCTTAAAGAAGTTGCAACCGATCACTTT
CGGGAGTATTCGAAGCAAGTTGTGAGAAATGCCCGCGCCATGGCCGACCA
ACTCATGAAACACGGATACAAGCTTGTCACGGACGGCACCGATAACCATC
TTGTGCTCTGGGACCTAAGACCGTCAGGCTTCTCAGGGAGTAAAGCTCAG
TTGCTGTTTGATAAGTGTAGCATAACTCTCAACAAAAACGCGGTGCACGG
CGACAAAAGTGCCCTTAGCCCTGGCGGCGTTCGTATCGGATCCCCTGCTC
TCACCAGCAGAGGTTTTACAGAGGATGATTTCCGCAAGGTGGCCGACTTT
CTGCACAGAGGTGTCCAAATTGGTCTCAACATTCAAGAGAAAACCGGCAA
GAAACTTGTCGATTACAAGCCAGCACTGGAAGCCCGTCCAGAATTGGAAT
CCCTTCGCAAAGATGTCGAGGCATTTGCCTCGTCGTTTGATATTCCCGGC
TTTGACGTGGAGGAGATGGAGTATAATCAGCTGGAATGA
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