Gchil8201.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8201.t1
Unique Name	Gchil8201.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	465

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:673731..675125 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX44552
Preferred name	LRRC29
PFAMs	CLU,F-box-like,LRR_4,LRR_6
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K10268,ko:K10275,ko:K10279
Evalue	1.39e-10
EggNOG OGs	KOG4341@1\|root,KOG4341@2759\|Eukaryota
Description	modulation by host of viral RNA genome replication
COG category	KLT
BRITE	ko00000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8201	Gchil8201	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 673731..675125 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8201.t1.start1	Gchil8201.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 673731..673733 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8201.t1.CDS1	Gchil8201.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 673731..675125 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8201.t1.exon1	Gchil8201.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 673731..675125 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8201.t1.stop1	Gchil8201.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 675123..675125 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8201.t1	Gchil8201.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 673731..675125 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:673731..675125+
coding sequence from alignment at tig00004384_pilon:673731..675125+

mRNA sequence

>Gchil8201.t1 ID=Gchil8201.t1|Name=Gchil8201.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=465bp
MTCQRSRCSSPFVRLGPDVFELLLAHLCGEPLNGAISTDAYRRLLPFAIC
CTHQYRLTRAAVNGLSLLPLRFTQRPAARPALPVPPFPVALYSFYSPAYR
HYTNSSSCSAVVFRNPHRGSASLLDLHLPRALATFPNLRSLHVYRTTRLS
DHGFETLILSLPALRELVVNANRHLTIDAIRRLPACKQLHTLQLSYCTGL
GDDACAEAAQIISGIASLRTLSVAYWNITDAFVERIAHLPNLSSLDLSLC
KRLTSRSCMHLASYAPNLHTFKMRCSPHLTDCGVRALAECSNLHFLNLSL
CRRISDDALQLMADARKMPHLHTVLLSQCQALTDTAVTFLSSNRNIRRLD
LSYCEALTDHIAYSLSTMYNLQDIDLSGCSGITDNVVMALLNCKSLTNIS
VAFCLGLTDHSANALCSAARTAPYNMVDVRKCVQISMAALSSLSAKCVTL
RSALHNQITLSTCP*

spliced messenger RNA

>Gchil8201.t1 ID=Gchil8201.t1|Name=Gchil8201.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00004384_pilon:673731..675125+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTGCCAGCGCTCCCGCTGCTCCTCGCCGTTCGTGCGCCTCGGCCC
GGACGTGTTCGAGCTGCTGCTGGCGCATCTGTGCGGCGAGCCGCTCAACG
GCGCCATCTCCACCGACGCCTACCGCAGGCTGCTTCCGTTCGCCATCTGC
TGCACACACCAATACCGTCTCACGCGCGCCGCCGTCAACGGGCTTTCTCT
CCTTCCGCTCCGCTTCACGCAGCGCCCTGCTGCGCGTCCCGCCTTGCCCG
TCCCGCCCTTCCCCGTCGCCCTCTACAGCTTCTACAGCCCCGCCTACCGC
CACTACACCAACAGCTCCTCGTGTTCTGCCGTCGTCTTTCGCAACCCGCA
CCGCGGCAGCGCCTCCCTTCTGGACCTTCATTTGCCGCGCGCGCTCGCCA
CATTCCCCAATCTGCGCTCCCTGCACGTGTACCGCACCACCCGTCTGTCT
GATCACGGCTTCGAGACGCTTATTCTCAGTCTTCCTGCCCTTCGCGAGCT
TGTTGTTAACGCCAACCGCCATCTCACCATCGATGCCATTCGTCGTTTGC
CCGCATGTAAACAATTGCACACCCTGCAACTCTCGTACTGCACCGGCTTG
GGCGACGACGCCTGCGCCGAGGCTGCCCAAATCATCTCCGGAATAGCCTC
CTTGCGCACGCTCAGTGTCGCCTATTGGAATATCACCGACGCCTTCGTAG
AGCGCATCGCCCACCTCCCCAATCTTTCCAGCCTGGACCTCAGCCTATGC
AAGCGCCTCACTTCCCGGTCGTGCATGCATCTCGCGAGCTACGCCCCTAA
CCTTCACACTTTCAAGATGCGCTGTTCGCCGCATCTCACCGACTGCGGCG
TGCGCGCCCTGGCCGAGTGTTCCAACCTCCACTTTCTCAACCTTTCGCTC
TGTCGACGCATTTCAGATGACGCACTGCAACTTATGGCCGACGCCCGCAA
AATGCCTCATTTACACACCGTGCTCCTCTCGCAGTGTCAAGCGCTCACCG
ATACGGCTGTCACCTTTCTGTCGTCCAACCGTAACATCAGGCGTCTGGAT
CTGAGCTACTGCGAAGCCCTAACCGATCACATTGCCTACTCGCTCAGCAC
CATGTACAACCTGCAAGATATTGACCTCAGTGGATGCAGCGGCATCACTG
ATAACGTTGTCATGGCGTTACTCAACTGCAAATCGTTAACAAATATCAGT
GTGGCGTTCTGCTTGGGTCTAACCGACCACAGCGCAAACGCCTTGTGCTC
TGCGGCTCGAACGGCGCCGTACAACATGGTGGATGTGAGAAAATGTGTCC
AAATATCCATGGCAGCCTTGAGCAGCTTATCTGCCAAGTGCGTAACGTTG
AGGAGTGCTCTCCACAACCAGATTACACTTTCAACATGCCCTTAG

protein sequence of Gchil8201.t1

>Gchil8201.t1 ID=Gchil8201.t1|Name=Gchil8201.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=465bp
MTCQRSRCSSPFVRLGPDVFELLLAHLCGEPLNGAISTDAYRRLLPFAIC
CTHQYRLTRAAVNGLSLLPLRFTQRPAARPALPVPPFPVALYSFYSPAYR
HYTNSSSCSAVVFRNPHRGSASLLDLHLPRALATFPNLRSLHVYRTTRLS
DHGFETLILSLPALRELVVNANRHLTIDAIRRLPACKQLHTLQLSYCTGL
GDDACAEAAQIISGIASLRTLSVAYWNITDAFVERIAHLPNLSSLDLSLC
KRLTSRSCMHLASYAPNLHTFKMRCSPHLTDCGVRALAECSNLHFLNLSL
CRRISDDALQLMADARKMPHLHTVLLSQCQALTDTAVTFLSSNRNIRRLD
LSYCEALTDHIAYSLSTMYNLQDIDLSGCSGITDNVVMALLNCKSLTNIS
VAFCLGLTDHSANALCSAARTAPYNMVDVRKCVQISMAALSSLSAKCVTL
RSALHNQITLSTCP*

mRNA from alignment at tig00004384_pilon:673731..675125+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8201.t1 ID=Gchil8201.t1|Name=Gchil8201.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00004384_pilon:673731..675125+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGTGCCAGCGCTCCCGCTGCTCCTCGCCGTTCGTGCGCCTCGGCCC
GGACGTGTTCGAGCTGCTGCTGGCGCATCTGTGCGGCGAGCCGCTCAACG
GCGCCATCTCCACCGACGCCTACCGCAGGCTGCTTCCGTTCGCCATCTGC
TGCACACACCAATACCGTCTCACGCGCGCCGCCGTCAACGGGCTTTCTCT
CCTTCCGCTCCGCTTCACGCAGCGCCCTGCTGCGCGTCCCGCCTTGCCCG
TCCCGCCCTTCCCCGTCGCCCTCTACAGCTTCTACAGCCCCGCCTACCGC
CACTACACCAACAGCTCCTCGTGTTCTGCCGTCGTCTTTCGCAACCCGCA
CCGCGGCAGCGCCTCCCTTCTGGACCTTCATTTGCCGCGCGCGCTCGCCA
CATTCCCCAATCTGCGCTCCCTGCACGTGTACCGCACCACCCGTCTGTCT
GATCACGGCTTCGAGACGCTTATTCTCAGTCTTCCTGCCCTTCGCGAGCT
TGTTGTTAACGCCAACCGCCATCTCACCATCGATGCCATTCGTCGTTTGC
CCGCATGTAAACAATTGCACACCCTGCAACTCTCGTACTGCACCGGCTTG
GGCGACGACGCCTGCGCCGAGGCTGCCCAAATCATCTCCGGAATAGCCTC
CTTGCGCACGCTCAGTGTCGCCTATTGGAATATCACCGACGCCTTCGTAG
AGCGCATCGCCCACCTCCCCAATCTTTCCAGCCTGGACCTCAGCCTATGC
AAGCGCCTCACTTCCCGGTCGTGCATGCATCTCGCGAGCTACGCCCCTAA
CCTTCACACTTTCAAGATGCGCTGTTCGCCGCATCTCACCGACTGCGGCG
TGCGCGCCCTGGCCGAGTGTTCCAACCTCCACTTTCTCAACCTTTCGCTC
TGTCGACGCATTTCAGATGACGCACTGCAACTTATGGCCGACGCCCGCAA
AATGCCTCATTTACACACCGTGCTCCTCTCGCAGTGTCAAGCGCTCACCG
ATACGGCTGTCACCTTTCTGTCGTCCAACCGTAACATCAGGCGTCTGGAT
CTGAGCTACTGCGAAGCCCTAACCGATCACATTGCCTACTCGCTCAGCAC
CATGTACAACCTGCAAGATATTGACCTCAGTGGATGCAGCGGCATCACTG
ATAACGTTGTCATGGCGTTACTCAACTGCAAATCGTTAACAAATATCAGT
GTGGCGTTCTGCTTGGGTCTAACCGACCACAGCGCAAACGCCTTGTGCTC
TGCGGCTCGAACGGCGCCGTACAACATGGTGGATGTGAGAAAATGTGTCC
AAATATCCATGGCAGCCTTGAGCAGCTTATCTGCCAAGTGCGTAACGTTG
AGGAGTGCTCTCCACAACCAGATTACACTTTCAACATGCCCTTAG

Coding sequence (CDS) from alignment at tig00004384_pilon:673731..675125+

>Gchil8201.t1 ID=Gchil8201.t1|Name=Gchil8201.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00004384_pilon:673731..675125+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGTGCCAGCGCTCCCGCTGCTCCTCGCCGTTCGTGCGCCTCGGCCC
GGACGTGTTCGAGCTGCTGCTGGCGCATCTGTGCGGCGAGCCGCTCAACG
GCGCCATCTCCACCGACGCCTACCGCAGGCTGCTTCCGTTCGCCATCTGC
TGCACACACCAATACCGTCTCACGCGCGCCGCCGTCAACGGGCTTTCTCT
CCTTCCGCTCCGCTTCACGCAGCGCCCTGCTGCGCGTCCCGCCTTGCCCG
TCCCGCCCTTCCCCGTCGCCCTCTACAGCTTCTACAGCCCCGCCTACCGC
CACTACACCAACAGCTCCTCGTGTTCTGCCGTCGTCTTTCGCAACCCGCA
CCGCGGCAGCGCCTCCCTTCTGGACCTTCATTTGCCGCGCGCGCTCGCCA
CATTCCCCAATCTGCGCTCCCTGCACGTGTACCGCACCACCCGTCTGTCT
GATCACGGCTTCGAGACGCTTATTCTCAGTCTTCCTGCCCTTCGCGAGCT
TGTTGTTAACGCCAACCGCCATCTCACCATCGATGCCATTCGTCGTTTGC
CCGCATGTAAACAATTGCACACCCTGCAACTCTCGTACTGCACCGGCTTG
GGCGACGACGCCTGCGCCGAGGCTGCCCAAATCATCTCCGGAATAGCCTC
CTTGCGCACGCTCAGTGTCGCCTATTGGAATATCACCGACGCCTTCGTAG
AGCGCATCGCCCACCTCCCCAATCTTTCCAGCCTGGACCTCAGCCTATGC
AAGCGCCTCACTTCCCGGTCGTGCATGCATCTCGCGAGCTACGCCCCTAA
CCTTCACACTTTCAAGATGCGCTGTTCGCCGCATCTCACCGACTGCGGCG
TGCGCGCCCTGGCCGAGTGTTCCAACCTCCACTTTCTCAACCTTTCGCTC
TGTCGACGCATTTCAGATGACGCACTGCAACTTATGGCCGACGCCCGCAA
AATGCCTCATTTACACACCGTGCTCCTCTCGCAGTGTCAAGCGCTCACCG
ATACGGCTGTCACCTTTCTGTCGTCCAACCGTAACATCAGGCGTCTGGAT
CTGAGCTACTGCGAAGCCCTAACCGATCACATTGCCTACTCGCTCAGCAC
CATGTACAACCTGCAAGATATTGACCTCAGTGGATGCAGCGGCATCACTG
ATAACGTTGTCATGGCGTTACTCAACTGCAAATCGTTAACAAATATCAGT
GTGGCGTTCTGCTTGGGTCTAACCGACCACAGCGCAAACGCCTTGTGCTC
TGCGGCTCGAACGGCGCCGTACAACATGGTGGATGTGAGAAAATGTGTCC
AAATATCCATGGCAGCCTTGAGCAGCTTATCTGCCAAGTGCGTAACGTTG
AGGAGTGCTCTCCACAACCAGATTACACTTTCAACATGCCCTTAG