Gchil8167.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8167.t1
Unique NameGchil8167.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length418
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:397008..398588 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705880.1
PFAMsMem_trans
Max annot lvl2759|Eukaryota
KEGG koko:K07088
Evalue1.75e-20
EggNOG OGsCOG0679@1|root,KOG2722@2759|Eukaryota
Descriptionauxin efflux carrier
COG categoryB
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8167Gchil8167Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 397008..398588 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8167.t1Gchil8167.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 397008..398588 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8167.t1.start1Gchil8167.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 397008..397010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8167.t1.CDS1Gchil8167.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 397008..397140 +
Gchil8167.t1.CDS2Gchil8167.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 397231..397613 +
Gchil8167.t1.CDS3Gchil8167.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 397742..398116 +
Gchil8167.t1.CDS4Gchil8167.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 398226..398588 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8167.t1.exon1Gchil8167.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 397008..397140 +
Gchil8167.t1.exon2Gchil8167.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 397231..397613 +
Gchil8167.t1.exon3Gchil8167.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 397742..398116 +
Gchil8167.t1.exon4Gchil8167.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 398226..398588 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8167.t1.intron1Gchil8167.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 397141..397230 +
Gchil8167.t1.intron2Gchil8167.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 397614..397741 +
Gchil8167.t1.intron3Gchil8167.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 398117..398225 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8167.t1.stop1Gchil8167.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 398586..398588 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8167.t1 ID=Gchil8167.t1|Name=Gchil8167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=418bp
MSTSSQILGASIGGSVELLTLSAAGAAMVHIDVFTQPVTSALSRAVYLLF
IPSLVFGSILETTHSALMSVQQTGGNASSLQEIWVPVALALIVYLITAFI
AFPITRLVARHKQEAVKRAIFACLILGNANTMPLLVMQSLCETFPPMQTA
PQCYAKSMGYASLFLTVVNIVSWTALFQYLMYSPDSSVTVLDEEQALLQH
SSPPPPQHIRPLDHEDVDVNRHDPVKEAITKALLSPPFIAVVSAMTCALI
TPIGNAFLHEDGAMRPFFLSINIVGGVVVPVSCMIVGAELYRSLSANSEE
PQVMKRSKEEEFGTQTFIVILLVRMVVLPMVARGLYTALNLSEAVHNPLL
GVFGLVEFNVPTANNTVIMVSIAAEALPRIGRQLRQDVAKAVFWQFLATP
VFLTLNTAAALHLLYEA*
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spliced messenger RNA

>Gchil8167.t1 ID=Gchil8167.t1|Name=Gchil8167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00004384_pilon:397008..398588+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACTTCCTCGCAGATTCTCGGAGCCAGCATTGGCGGCAGCGTCGA
GCTGCTCACGCTCAGCGCCGCCGGCGCCGCAATGGTGCATATCGACGTCT
TCACGCAACCTGTCACATCAGCCCTATCTCGAGCTGTGTATCTGCTCTTC
ATCCCGTCCCTCGTCTTCGGCTCCATTCTGGAGACCACCCACTCCGCGCT
CATGTCCGTCCAACAAACCGGCGGTAACGCCTCCTCTCTGCAGGAAATTT
GGGTCCCCGTCGCCCTCGCCTTGATCGTCTATCTCATCACCGCCTTCATT
GCCTTTCCAATCACCCGCCTCGTCGCGCGCCACAAACAGGAGGCTGTCAA
GCGTGCCATTTTCGCCTGTCTCATTCTAGGTAACGCCAACACTATGCCTC
TGCTCGTCATGCAATCGCTGTGCGAGACCTTTCCCCCAATGCAAACCGCC
CCGCAGTGCTACGCCAAAAGCATGGGTTACGCCTCTCTGTTTCTCACCGT
TGTCAATATTGTTTCCTGGACTGCCCTGTTTCAATACCTCATGTATTCGC
CGGACAGCTCCGTCACTGTTCTCGACGAGGAGCAAGCGCTGTTGCAACAT
TCCTCTCCACCTCCTCCGCAACATATACGCCCGTTAGACCACGAAGACGT
CGACGTTAACCGACACGACCCTGTTAAGGAAGCCATCACCAAGGCGCTTC
TGTCTCCTCCATTCATCGCCGTCGTGTCTGCCATGACATGCGCGCTCATC
ACCCCCATTGGCAATGCATTTCTGCACGAAGACGGCGCCATGCGCCCCTT
TTTTCTTTCCATCAACATTGTTGGCGGCGTCGTCGTGCCCGTCAGCTGCA
TGATCGTCGGTGCCGAGCTTTATCGCTCTCTTTCCGCCAACAGTGAAGAA
CCCCAAGTGATGAAGAGATCAAAGGAAGAAGAATTCGGAACACAAACATT
CATCGTCATCCTGCTGGTGCGCATGGTTGTATTGCCTATGGTTGCTCGCG
GATTGTACACCGCGCTCAATCTGTCCGAAGCGGTGCATAATCCTCTGCTG
GGTGTTTTCGGCCTTGTGGAGTTCAATGTGCCCACAGCTAATAACACCGT
CATCATGGTCAGCATCGCGGCAGAGGCGCTTCCTCGAATAGGGCGACAAC
TCAGACAAGATGTGGCTAAAGCAGTATTCTGGCAGTTCCTGGCTACGCCC
GTGTTTCTCACCCTCAATACTGCCGCCGCGCTCCACCTGTTATACGAAGC
CTAA
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protein sequence of Gchil8167.t1

>Gchil8167.t1 ID=Gchil8167.t1|Name=Gchil8167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=418bp
MSTSSQILGASIGGSVELLTLSAAGAAMVHIDVFTQPVTSALSRAVYLLF
IPSLVFGSILETTHSALMSVQQTGGNASSLQEIWVPVALALIVYLITAFI
AFPITRLVARHKQEAVKRAIFACLILGNANTMPLLVMQSLCETFPPMQTA
PQCYAKSMGYASLFLTVVNIVSWTALFQYLMYSPDSSVTVLDEEQALLQH
SSPPPPQHIRPLDHEDVDVNRHDPVKEAITKALLSPPFIAVVSAMTCALI
TPIGNAFLHEDGAMRPFFLSINIVGGVVVPVSCMIVGAELYRSLSANSEE
PQVMKRSKEEEFGTQTFIVILLVRMVVLPMVARGLYTALNLSEAVHNPLL
GVFGLVEFNVPTANNTVIMVSIAAEALPRIGRQLRQDVAKAVFWQFLATP
VFLTLNTAAALHLLYEA*
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mRNA from alignment at tig00004384_pilon:397008..398588+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8167.t1 ID=Gchil8167.t1|Name=Gchil8167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00004384_pilon:397008..398588+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACTTCCTCGCAGATTCTCGGAGCCAGCATTGGCGGCAGCGTCGA
GCTGCTCACGCTCAGCGCCGCCGGCGCCGCAATGGTGCATATCGACGTCT
TCACGCAACCTGTCACATCAGCCCTATCTCGAGGTACGTCGCGTTTCTAT
CCACCAATCGCTCCCCTGCCCGCGCCGTGCCCGTTACCCGTCATTCAATC
TCACCCAATATCTCCTCCTCCAGCTGTGTATCTGCTCTTCATCCCGTCCC
TCGTCTTCGGCTCCATTCTGGAGACCACCCACTCCGCGCTCATGTCCGTC
CAACAAACCGGCGGTAACGCCTCCTCTCTGCAGGAAATTTGGGTCCCCGT
CGCCCTCGCCTTGATCGTCTATCTCATCACCGCCTTCATTGCCTTTCCAA
TCACCCGCCTCGTCGCGCGCCACAAACAGGAGGCTGTCAAGCGTGCCATT
TTCGCCTGTCTCATTCTAGGTAACGCCAACACTATGCCTCTGCTCGTCAT
GCAATCGCTGTGCGAGACCTTTCCCCCAATGCAAACCGCCCCGCAGTGCT
ACGCCAAAAGCATGGGTTACGCCTCTCTGTTTCTCACCGTTGTCAATATT
GTTTCCGTAAGTCTAGCCCTCACACACGACCCCCTCCCTCCCTCCTCCCC
ACCAAACAAAACCTCTTTTTCTCATCCATTCTCACCCTTATTGCTCTACA
CCCAACACATATGTGTATCCATGTACCTACATAGTGGACTGCCCTGTTTC
AATACCTCATGTATTCGCCGGACAGCTCCGTCACTGTTCTCGACGAGGAG
CAAGCGCTGTTGCAACATTCCTCTCCACCTCCTCCGCAACATATACGCCC
GTTAGACCACGAAGACGTCGACGTTAACCGACACGACCCTGTTAAGGAAG
CCATCACCAAGGCGCTTCTGTCTCCTCCATTCATCGCCGTCGTGTCTGCC
ATGACATGCGCGCTCATCACCCCCATTGGCAATGCATTTCTGCACGAAGA
CGGCGCCATGCGCCCCTTTTTTCTTTCCATCAACATTGTTGGCGGCGTCG
TCGTGCCCGTCAGCTGCATGATCGTCGGTGCCGAGCTTTATCGCTCTCTT
TCCGCCAACGTAAGCTttctttccttcctgtgctcattcctccttcctcc
tGCAGCCGTGCGCTTGCAACCGCAACTTACTCACCGTGCCCTCGCTTGTG
TCTTGTGCCCCGCCACAGAGTGAAGAACCCCAAGTGATGAAGAGATCAAA
GGAAGAAGAATTCGGAACACAAACATTCATCGTCATCCTGCTGGTGCGCA
TGGTTGTATTGCCTATGGTTGCTCGCGGATTGTACACCGCGCTCAATCTG
TCCGAAGCGGTGCATAATCCTCTGCTGGGTGTTTTCGGCCTTGTGGAGTT
CAATGTGCCCACAGCTAATAACACCGTCATCATGGTCAGCATCGCGGCAG
AGGCGCTTCCTCGAATAGGGCGACAACTCAGACAAGATGTGGCTAAAGCA
GTATTCTGGCAGTTCCTGGCTACGCCCGTGTTTCTCACCCTCAATACTGC
CGCCGCGCTCCACCTGTTATACGAAGCCTAA
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Coding sequence (CDS) from alignment at tig00004384_pilon:397008..398588+

>Gchil8167.t1 ID=Gchil8167.t1|Name=Gchil8167.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00004384_pilon:397008..398588+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACTTCCTCGCAGATTCTCGGAGCCAGCATTGGCGGCAGCGTCGA
GCTGCTCACGCTCAGCGCCGCCGGCGCCGCAATGGTGCATATCGACGTCT
TCACGCAACCTGTCACATCAGCCCTATCTCGAGCTGTGTATCTGCTCTTC
ATCCCGTCCCTCGTCTTCGGCTCCATTCTGGAGACCACCCACTCCGCGCT
CATGTCCGTCCAACAAACCGGCGGTAACGCCTCCTCTCTGCAGGAAATTT
GGGTCCCCGTCGCCCTCGCCTTGATCGTCTATCTCATCACCGCCTTCATT
GCCTTTCCAATCACCCGCCTCGTCGCGCGCCACAAACAGGAGGCTGTCAA
GCGTGCCATTTTCGCCTGTCTCATTCTAGGTAACGCCAACACTATGCCTC
TGCTCGTCATGCAATCGCTGTGCGAGACCTTTCCCCCAATGCAAACCGCC
CCGCAGTGCTACGCCAAAAGCATGGGTTACGCCTCTCTGTTTCTCACCGT
TGTCAATATTGTTTCCTGGACTGCCCTGTTTCAATACCTCATGTATTCGC
CGGACAGCTCCGTCACTGTTCTCGACGAGGAGCAAGCGCTGTTGCAACAT
TCCTCTCCACCTCCTCCGCAACATATACGCCCGTTAGACCACGAAGACGT
CGACGTTAACCGACACGACCCTGTTAAGGAAGCCATCACCAAGGCGCTTC
TGTCTCCTCCATTCATCGCCGTCGTGTCTGCCATGACATGCGCGCTCATC
ACCCCCATTGGCAATGCATTTCTGCACGAAGACGGCGCCATGCGCCCCTT
TTTTCTTTCCATCAACATTGTTGGCGGCGTCGTCGTGCCCGTCAGCTGCA
TGATCGTCGGTGCCGAGCTTTATCGCTCTCTTTCCGCCAACAGTGAAGAA
CCCCAAGTGATGAAGAGATCAAAGGAAGAAGAATTCGGAACACAAACATT
CATCGTCATCCTGCTGGTGCGCATGGTTGTATTGCCTATGGTTGCTCGCG
GATTGTACACCGCGCTCAATCTGTCCGAAGCGGTGCATAATCCTCTGCTG
GGTGTTTTCGGCCTTGTGGAGTTCAATGTGCCCACAGCTAATAACACCGT
CATCATGGTCAGCATCGCGGCAGAGGCGCTTCCTCGAATAGGGCGACAAC
TCAGACAAGATGTGGCTAAAGCAGTATTCTGGCAGTTCCTGGCTACGCCC
GTGTTTCTCACCCTCAATACTGCCGCCGCGCTCCACCTGTTATACGAAGC
CTAA
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