Gchil8128.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8128.t1
Unique NameGchil8128.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length477
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:90676..92106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001744295.1
Preferred nameACRC
PFAMsSprT-like,Zn_ribbon_SprT
Max annot lvl33154|Opisthokonta
GOsGO:0000003,GO:0000280,GO:0000793,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006304,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016043,GO:0016787,GO:0019538,GO:0022402,GO:0022414,GO:0033554,GO:0034641,GO:0035510,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0044728,GO:0045132,GO:0046483,GO:0048285,GO:0050896,GO:0051321,GO:0051716,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1903046
Evalue5.27e-39
EggNOG OGsKOG3854@1|root,KOG3854@2759|Eukaryota,39RR1@33154|Opisthokonta
DescriptionAcidic repeat-containing protein
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8128Gchil8128Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 90676..92106 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8128.t1.start1Gchil8128.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 90676..90678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8128.t1.CDS1Gchil8128.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 90676..92106 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8128.t1.exon1Gchil8128.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 90676..92106 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8128.t1.stop1Gchil8128.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 92104..92106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8128.t1Gchil8128.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 90676..92106 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8128.t1 ID=Gchil8128.t1|Name=Gchil8128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=477bp
MSTSPAFTTSPPLSPTRQKRREQILNLAGRRGWLVAPRAASVVEACHSAW
KAGTLPEVSFIPSPPSCQNTGTQSADSDGSESELKPSSTSITSPNSNNPS
PTCERIDLLCGSLSDMNVNRNKARDTRPISLLSDPYRSEPAAYKSVENNA
AVLELQRHWVGRRKFLSKQTESSSINRGNNDASVSKLSSDSNCTIPLTTS
QGRNAMQPPSVDRLGGNIAGNQPPSRRGHARDPPSPMLQHLRCNINVHVH
AKTTPLGPTPFQDPAPRNAQSPFQRSPRRTVDASHLVSEQQQAGLKFSHQ
WLHPGSFLKTRDASARSLLRMFDRALFEGALTSDIRPKVTLGWNARLNRT
AGITKMKQIPTTGERRATIELSTKVIDEPDRLYKTLAHELCHAAAWIIDN
TSKPPHGAVFKSWAERFRQWDANLKITRCHDYEINYKYNYKCVKCSHTYG
RHSKSIDTTKKVCGVCRSTLKLTTAP*
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spliced messenger RNA

>Gchil8128.t1 ID=Gchil8128.t1|Name=Gchil8128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00004384_pilon:90676..92106+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTACTTCCCCTGCTTTCACTACCTCCCCACCTCTTTCTCCCACCCG
TCAGAAGCGTAGGGAACAGATTCTTAACCTTGCAGGGAGACGCGGCTGGC
TGGTCGCGCCGCGTGCTGCAAGTGTTGTCGAAGCTTGTCATTCTGCCTGG
AAGGCTGGAACACTCCCGGAGGTGTCTTTCATTCCGTCCCCGCCATCTTG
CCAGAACACTGGGACCCAGTCTGCGGATTCAGATGGCTCAGAATCTGAGT
TGAAGCCTTCCAGCACTTCCATAACCTCACCCAATTCAAATAACCCATCG
CCGACTTGTGAACGCATTGATCTACTCTGCGGCAGCTTGAGCGATATGAA
CGTTAACAGAAACAAAGCTCGAGATACACGCCCTATCAGTCTTTTATCTG
ATCCATACCGCTCGGAACCCGCTGCTTATAAAAGTGTAGAGAATAACGCG
GCAGTATTGGAACTGCAACGGCACTGGGTCGGCCGCCGAAAATTTCTGTC
AAAACAAACGGAATCATCTTCCATCAACAGAGGGAATAATGATGCTTCCG
TTTCGAAGTTATCTTCCGACTCTAATTGTACCATCCCACTGACCACATCT
CAAGGAAGAAATGCTATGCAACCACCCAGCGTCGACCGGCTAGGAGGAAA
CATAGCCGGAAACCAGCCACCATCGCGGCGTGGGCATGCCCGAGACCCAC
CCTCGCCCATGCTCCAGCATTTGCGCTGCAACATCAATGTACATGTACAC
GCGAAAACGACGCCCCTCGGGCCGACCCCTTTCCAAGACCCAGCCCCGCG
GAATGCCCAATCTCCATTTCAAAGGTCTCCTCGGAGAACCGTCGACGCCT
CGCACCTGGTATCGGAACAACAACAAGCCGGTCTCAAGTTTAGCCATCAA
TGGCTTCATCCTGGGTCATTTCTGAAAACACGGGACGCTTCTGCCAGAAG
TTTGTTACGGATGTTCGATAGAGCATTGTTTGAAGGCGCGTTGACTAGCG
ACATTAGGCCAAAAGTCACCCTCGGATGGAATGCAAGGCTGAATAGGACG
GCAGGTATTACAAAAATGAAGCAAATTCCGACAACTGGCGAAAGAAGAGC
GACGATCGAACTTAGCACAAAAGTTATTGATGAACCGGATAGACTTTACA
AGACCTTGGCACATGAACTGTGCCATGCTGCTGCTTGGATTATTGATAAC
ACTTCAAAACCGCCACACGGAGCAGTATTCAAATCTTGGGCCGAACGTTT
CAGACAGTGGGACGCAAATTTGAAGATCACGAGGTGTCATGACTACGAAA
TCAATTATAAGTACAACTACAAATGTGTGAAATGCAGTCATACGTATGGT
AGGCATTCTAAAAGTATCGACACTACTAAGAAGGTATGCGGCGTTTGTCG
GAGTACTCTGAAGTTAACTACTGCACCATAG
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protein sequence of Gchil8128.t1

>Gchil8128.t1 ID=Gchil8128.t1|Name=Gchil8128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=477bp
MSTSPAFTTSPPLSPTRQKRREQILNLAGRRGWLVAPRAASVVEACHSAW
KAGTLPEVSFIPSPPSCQNTGTQSADSDGSESELKPSSTSITSPNSNNPS
PTCERIDLLCGSLSDMNVNRNKARDTRPISLLSDPYRSEPAAYKSVENNA
AVLELQRHWVGRRKFLSKQTESSSINRGNNDASVSKLSSDSNCTIPLTTS
QGRNAMQPPSVDRLGGNIAGNQPPSRRGHARDPPSPMLQHLRCNINVHVH
AKTTPLGPTPFQDPAPRNAQSPFQRSPRRTVDASHLVSEQQQAGLKFSHQ
WLHPGSFLKTRDASARSLLRMFDRALFEGALTSDIRPKVTLGWNARLNRT
AGITKMKQIPTTGERRATIELSTKVIDEPDRLYKTLAHELCHAAAWIIDN
TSKPPHGAVFKSWAERFRQWDANLKITRCHDYEINYKYNYKCVKCSHTYG
RHSKSIDTTKKVCGVCRSTLKLTTAP*
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mRNA from alignment at tig00004384_pilon:90676..92106+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8128.t1 ID=Gchil8128.t1|Name=Gchil8128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1431bp|location=Sequence derived from alignment at tig00004384_pilon:90676..92106+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTACTTCCCCTGCTTTCACTACCTCCCCACCTCTTTCTCCCACCCG
TCAGAAGCGTAGGGAACAGATTCTTAACCTTGCAGGGAGACGCGGCTGGC
TGGTCGCGCCGCGTGCTGCAAGTGTTGTCGAAGCTTGTCATTCTGCCTGG
AAGGCTGGAACACTCCCGGAGGTGTCTTTCATTCCGTCCCCGCCATCTTG
CCAGAACACTGGGACCCAGTCTGCGGATTCAGATGGCTCAGAATCTGAGT
TGAAGCCTTCCAGCACTTCCATAACCTCACCCAATTCAAATAACCCATCG
CCGACTTGTGAACGCATTGATCTACTCTGCGGCAGCTTGAGCGATATGAA
CGTTAACAGAAACAAAGCTCGAGATACACGCCCTATCAGTCTTTTATCTG
ATCCATACCGCTCGGAACCCGCTGCTTATAAAAGTGTAGAGAATAACGCG
GCAGTATTGGAACTGCAACGGCACTGGGTCGGCCGCCGAAAATTTCTGTC
AAAACAAACGGAATCATCTTCCATCAACAGAGGGAATAATGATGCTTCCG
TTTCGAAGTTATCTTCCGACTCTAATTGTACCATCCCACTGACCACATCT
CAAGGAAGAAATGCTATGCAACCACCCAGCGTCGACCGGCTAGGAGGAAA
CATAGCCGGAAACCAGCCACCATCGCGGCGTGGGCATGCCCGAGACCCAC
CCTCGCCCATGCTCCAGCATTTGCGCTGCAACATCAATGTACATGTACAC
GCGAAAACGACGCCCCTCGGGCCGACCCCTTTCCAAGACCCAGCCCCGCG
GAATGCCCAATCTCCATTTCAAAGGTCTCCTCGGAGAACCGTCGACGCCT
CGCACCTGGTATCGGAACAACAACAAGCCGGTCTCAAGTTTAGCCATCAA
TGGCTTCATCCTGGGTCATTTCTGAAAACACGGGACGCTTCTGCCAGAAG
TTTGTTACGGATGTTCGATAGAGCATTGTTTGAAGGCGCGTTGACTAGCG
ACATTAGGCCAAAAGTCACCCTCGGATGGAATGCAAGGCTGAATAGGACG
GCAGGTATTACAAAAATGAAGCAAATTCCGACAACTGGCGAAAGAAGAGC
GACGATCGAACTTAGCACAAAAGTTATTGATGAACCGGATAGACTTTACA
AGACCTTGGCACATGAACTGTGCCATGCTGCTGCTTGGATTATTGATAAC
ACTTCAAAACCGCCACACGGAGCAGTATTCAAATCTTGGGCCGAACGTTT
CAGACAGTGGGACGCAAATTTGAAGATCACGAGGTGTCATGACTACGAAA
TCAATTATAAGTACAACTACAAATGTGTGAAATGCAGTCATACGTATGGT
AGGCATTCTAAAAGTATCGACACTACTAAGAAGGTATGCGGCGTTTGTCG
GAGTACTCTGAAGTTAACTACTGCACCATAG
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Coding sequence (CDS) from alignment at tig00004384_pilon:90676..92106+

>Gchil8128.t1 ID=Gchil8128.t1|Name=Gchil8128.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1431bp|location=Sequence derived from alignment at tig00004384_pilon:90676..92106+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTACTTCCCCTGCTTTCACTACCTCCCCACCTCTTTCTCCCACCCG
TCAGAAGCGTAGGGAACAGATTCTTAACCTTGCAGGGAGACGCGGCTGGC
TGGTCGCGCCGCGTGCTGCAAGTGTTGTCGAAGCTTGTCATTCTGCCTGG
AAGGCTGGAACACTCCCGGAGGTGTCTTTCATTCCGTCCCCGCCATCTTG
CCAGAACACTGGGACCCAGTCTGCGGATTCAGATGGCTCAGAATCTGAGT
TGAAGCCTTCCAGCACTTCCATAACCTCACCCAATTCAAATAACCCATCG
CCGACTTGTGAACGCATTGATCTACTCTGCGGCAGCTTGAGCGATATGAA
CGTTAACAGAAACAAAGCTCGAGATACACGCCCTATCAGTCTTTTATCTG
ATCCATACCGCTCGGAACCCGCTGCTTATAAAAGTGTAGAGAATAACGCG
GCAGTATTGGAACTGCAACGGCACTGGGTCGGCCGCCGAAAATTTCTGTC
AAAACAAACGGAATCATCTTCCATCAACAGAGGGAATAATGATGCTTCCG
TTTCGAAGTTATCTTCCGACTCTAATTGTACCATCCCACTGACCACATCT
CAAGGAAGAAATGCTATGCAACCACCCAGCGTCGACCGGCTAGGAGGAAA
CATAGCCGGAAACCAGCCACCATCGCGGCGTGGGCATGCCCGAGACCCAC
CCTCGCCCATGCTCCAGCATTTGCGCTGCAACATCAATGTACATGTACAC
GCGAAAACGACGCCCCTCGGGCCGACCCCTTTCCAAGACCCAGCCCCGCG
GAATGCCCAATCTCCATTTCAAAGGTCTCCTCGGAGAACCGTCGACGCCT
CGCACCTGGTATCGGAACAACAACAAGCCGGTCTCAAGTTTAGCCATCAA
TGGCTTCATCCTGGGTCATTTCTGAAAACACGGGACGCTTCTGCCAGAAG
TTTGTTACGGATGTTCGATAGAGCATTGTTTGAAGGCGCGTTGACTAGCG
ACATTAGGCCAAAAGTCACCCTCGGATGGAATGCAAGGCTGAATAGGACG
GCAGGTATTACAAAAATGAAGCAAATTCCGACAACTGGCGAAAGAAGAGC
GACGATCGAACTTAGCACAAAAGTTATTGATGAACCGGATAGACTTTACA
AGACCTTGGCACATGAACTGTGCCATGCTGCTGCTTGGATTATTGATAAC
ACTTCAAAACCGCCACACGGAGCAGTATTCAAATCTTGGGCCGAACGTTT
CAGACAGTGGGACGCAAATTTGAAGATCACGAGGTGTCATGACTACGAAA
TCAATTATAAGTACAACTACAAATGTGTGAAATGCAGTCATACGTATGGT
AGGCATTCTAAAAGTATCGACACTACTAAGAAGGTATGCGGCGTTTGTCG
GAGTACTCTGAAGTTAACTACTGCACCATAG
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