Gchil8058.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8058.t1
Unique NameGchil8058.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length186
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004435_piloncontigtig00004435_pilon:671057..671614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog331113.SNE_A07200
Preferred nameligA
PFAMsBRCT,DNA_ligase_OB,DNA_ligase_ZBD,DNA_ligase_aden,HHH_2,HHH_5
Max annot lvl204428|Chlamydiae
KEGG rclassRC00005
KEGG koko:K01972
KEGG ReactionR00382
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Evalue1.95e-14
EggNOG OGsCOG0272@1|root,COG0272@2|Bacteria,2JFKS@204428|Chlamydiae
EC6.5.1.2
DescriptionDNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8058Gchil8058Gracilaria chilensis NLEC103_M9 malegenetig00004435_pilon 671057..671614 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8058.t1.start1Gchil8058.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004435_pilon 671057..671059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8058.t1.CDS1Gchil8058.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004435_pilon 671057..671614 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8058.t1.exon1Gchil8058.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004435_pilon 671057..671614 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8058.t1.stop1Gchil8058.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004435_pilon 671612..671614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8058.t1Gchil8058.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004435_pilon 671057..671614 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8058.t1 ID=Gchil8058.t1|Name=Gchil8058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=186bp
MYYADEPKLASLTKSTMNLFFTFWSSRDVFRDSFMMIFEARQFVMAQLTA
RTILALENEFLEVGYVGAQDSFVATVTVAVKGFEQHSHSVIMISLNNAYS
HADLTAFVNRALAAESERSMEIRIDCVVLSLEYQDHELCRALTRGTGRVG
DEVTDNVRESLVGSGKVDRIPQPNVPDVLIVRGEV*
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spliced messenger RNA

>Gchil8058.t1 ID=Gchil8058.t1|Name=Gchil8058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00004435_pilon:671057..671614+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATTACGCGGATGAGCCAAAACTCGCATCTCTGACGAAGAGTACGAT
GAACTTGTTCTTCACCTTTTGGAGCTCGAGAGATGTTTTCCGGGACTCAT
TCATGATGATTTTCGAAGCCAGACAGTTTGTCATGGCGCAGTTGACCGCC
CGGACAATTCTTGCTCTTGAGAACGAGTTTCTCGAAGTTGGTTATGTTGG
TGCCCAAGACTCATTTGTTGCCACGGTTACAGTAGCAGTGAAGGGCTTCG
AACAGCATAGTCATAGCGTGATAATGATTTCTCTGAACAATGCATACTCA
CATGCAGATTTGACTGCCTTCGTCAATCGAGCGTTAGCAGCGGAATCTGA
GAGGTCGATGGAGATAAGAATTGACTGCGTCGTATTATCTCTCGAATACC
AAGATCATGAGCTTTGTCGAGCATTGACGCGAGGAACTGGAAGAGTTGGT
GATGAAGTAACTGATAATGTCAGAGAGTCTCTCGTGGGAAGCGGAAAAGT
GGATAGGATTCCTCAACCCAATGTGCCTGACGTTTTAATAGTTCGCGGCG
AAGTATAA
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protein sequence of Gchil8058.t1

>Gchil8058.t1 ID=Gchil8058.t1|Name=Gchil8058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=186bp
MYYADEPKLASLTKSTMNLFFTFWSSRDVFRDSFMMIFEARQFVMAQLTA
RTILALENEFLEVGYVGAQDSFVATVTVAVKGFEQHSHSVIMISLNNAYS
HADLTAFVNRALAAESERSMEIRIDCVVLSLEYQDHELCRALTRGTGRVG
DEVTDNVRESLVGSGKVDRIPQPNVPDVLIVRGEV*
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mRNA from alignment at tig00004435_pilon:671057..671614+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8058.t1 ID=Gchil8058.t1|Name=Gchil8058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00004435_pilon:671057..671614+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATTACGCGGATGAGCCAAAACTCGCATCTCTGACGAAGAGTACGAT
GAACTTGTTCTTCACCTTTTGGAGCTCGAGAGATGTTTTCCGGGACTCAT
TCATGATGATTTTCGAAGCCAGACAGTTTGTCATGGCGCAGTTGACCGCC
CGGACAATTCTTGCTCTTGAGAACGAGTTTCTCGAAGTTGGTTATGTTGG
TGCCCAAGACTCATTTGTTGCCACGGTTACAGTAGCAGTGAAGGGCTTCG
AACAGCATAGTCATAGCGTGATAATGATTTCTCTGAACAATGCATACTCA
CATGCAGATTTGACTGCCTTCGTCAATCGAGCGTTAGCAGCGGAATCTGA
GAGGTCGATGGAGATAAGAATTGACTGCGTCGTATTATCTCTCGAATACC
AAGATCATGAGCTTTGTCGAGCATTGACGCGAGGAACTGGAAGAGTTGGT
GATGAAGTAACTGATAATGTCAGAGAGTCTCTCGTGGGAAGCGGAAAAGT
GGATAGGATTCCTCAACCCAATGTGCCTGACGTTTTAATAGTTCGCGGCG
AAGTATAA
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Coding sequence (CDS) from alignment at tig00004435_pilon:671057..671614+

>Gchil8058.t1 ID=Gchil8058.t1|Name=Gchil8058.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=558bp|location=Sequence derived from alignment at tig00004435_pilon:671057..671614+ (Gracilaria chilensis NLEC103_M9 male)
ATGTATTACGCGGATGAGCCAAAACTCGCATCTCTGACGAAGAGTACGAT
GAACTTGTTCTTCACCTTTTGGAGCTCGAGAGATGTTTTCCGGGACTCAT
TCATGATGATTTTCGAAGCCAGACAGTTTGTCATGGCGCAGTTGACCGCC
CGGACAATTCTTGCTCTTGAGAACGAGTTTCTCGAAGTTGGTTATGTTGG
TGCCCAAGACTCATTTGTTGCCACGGTTACAGTAGCAGTGAAGGGCTTCG
AACAGCATAGTCATAGCGTGATAATGATTTCTCTGAACAATGCATACTCA
CATGCAGATTTGACTGCCTTCGTCAATCGAGCGTTAGCAGCGGAATCTGA
GAGGTCGATGGAGATAAGAATTGACTGCGTCGTATTATCTCTCGAATACC
AAGATCATGAGCTTTGTCGAGCATTGACGCGAGGAACTGGAAGAGTTGGT
GATGAAGTAACTGATAATGTCAGAGAGTCTCTCGTGGGAAGCGGAAAAGT
GGATAGGATTCCTCAACCCAATGTGCCTGACGTTTTAATAGTTCGCGGCG
AAGTATAA
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