Gchil7404.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7404.t1
Unique NameGchil7404.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:948492..949207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708491.1
Preferred nameRPS9
PFAMsRibosomal_S4,S4
Max annot lvl2759|Eukaryota
KEGG koko:K02997,ko:K17675
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006417,GO:0006450,GO:0008150,GO:0009506,GO:0009507,GO:0009536,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015935,GO:0016020,GO:0019222,GO:0019843,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032991,GO:0034248,GO:0034250,GO:0042788,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045727,GO:0045903,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0071944,GO:0080090,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1990904,GO:2000112
Evalue7.09e-100
EggNOG OGsCOG0522@1|root,KOG3301@2759|Eukaryota
EC3.6.4.13
Descriptionpositive regulation of translational fidelity
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7404Gchil7404Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 948492..949207 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7404.t1Gchil7404.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 948492..949207 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7404.t1.start1Gchil7404.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 948492..948494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7404.t1.CDS1Gchil7404.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 948492..948510 +
Gchil7404.t1.CDS2Gchil7404.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 948645..949207 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7404.t1.exon1Gchil7404.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 948492..948510 +
Gchil7404.t1.exon2Gchil7404.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 948645..949207 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7404.t1.intron1Gchil7404.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000007_pilon 948511..948644 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7404.t1.stop1Gchil7404.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 949205..949207 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7404.t1 ID=Gchil7404.t1|Name=Gchil7404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=194bp
MTNYRNASKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSK
IRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKV
QDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVD
SQKHIDFALTSPFGGGRPGRVKRRAIARRKSSGGGGGEDEDDE*
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spliced messenger RNA

>Gchil7404.t1 ID=Gchil7404.t1|Name=Gchil7404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000007_pilon:948492..949207+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAACTATCGCAACGCTTCCAAGACCTATCGTACTCCACGGCGCCC
GTATGAGAAAGAACGTCTGGACTCCGAGCTGCAGCTCGCCGGAAAATATG
GGCTTCGCAACAAGCGTGAAATCTGGCGTGTGCAACTGGTGCTGTCCAAG
ATCCGATCTGCTGCTCGTGAACTTCTCACTCTAGAAGAGAAGGATCCGCG
CCGCATTTTTGAAGGCAATGCTCTGCTGCGTCGTTTAACTCGTCTTGGGC
TCTTGGACGAATCGCGACAAGCTCTTGACTACGTGCTTTCCCTCAAAGTT
CAGGATTTCTTGGAACGCCGTCTCCAGACGCAGGTTGTCAAGCTTGGTTT
GGCAAAATCTATTCACCATGCCCGCTGCCTGATCAAGCAGCGTCACATTC
GAGTCGGGAAGCAGCTTGTTAACGTTCCCTCCTTCACTGTGCGAGTCGAT
TCGCAGAAGCATATTGACTTCGCTCTCACCTCTCCGTTTGGTGGTGGACG
GCCTGGTCGTGTCAAGCGTAGGGCTATTGCTAGGCGCAAGAgcagcggcg
gcggcggcggGGAAGACGAGGACGATGAGTGA
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protein sequence of Gchil7404.t1

>Gchil7404.t1 ID=Gchil7404.t1|Name=Gchil7404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=194bp
MTNYRNASKTYRTPRRPYEKERLDSELQLAGKYGLRNKREIWRVQLVLSK
IRSAARELLTLEEKDPRRIFEGNALLRRLTRLGLLDESRQALDYVLSLKV
QDFLERRLQTQVVKLGLAKSIHHARCLIKQRHIRVGKQLVNVPSFTVRVD
SQKHIDFALTSPFGGGRPGRVKRRAIARRKSSGGGGGEDEDDE*
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mRNA from alignment at tig00000007_pilon:948492..949207+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7404.t1 ID=Gchil7404.t1|Name=Gchil7404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=716bp|location=Sequence derived from alignment at tig00000007_pilon:948492..949207+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAAACTATCGCAACGGTACGTTTCTCGAGATCTACCATCCCCTTGT
GTTCACCGTTGACCGTGATAGCGAGATTAGCCGTCGTCGTAGACGAACTA
ACCTGAATATGCTCCTGTTGAACTTCATGAATCGCTTTTGTGAAACCTTC
TAGCTTCCAAGACCTATCGTACTCCACGGCGCCCGTATGAGAAAGAACGT
CTGGACTCCGAGCTGCAGCTCGCCGGAAAATATGGGCTTCGCAACAAGCG
TGAAATCTGGCGTGTGCAACTGGTGCTGTCCAAGATCCGATCTGCTGCTC
GTGAACTTCTCACTCTAGAAGAGAAGGATCCGCGCCGCATTTTTGAAGGC
AATGCTCTGCTGCGTCGTTTAACTCGTCTTGGGCTCTTGGACGAATCGCG
ACAAGCTCTTGACTACGTGCTTTCCCTCAAAGTTCAGGATTTCTTGGAAC
GCCGTCTCCAGACGCAGGTTGTCAAGCTTGGTTTGGCAAAATCTATTCAC
CATGCCCGCTGCCTGATCAAGCAGCGTCACATTCGAGTCGGGAAGCAGCT
TGTTAACGTTCCCTCCTTCACTGTGCGAGTCGATTCGCAGAAGCATATTG
ACTTCGCTCTCACCTCTCCGTTTGGTGGTGGACGGCCTGGTCGTGTCAAG
CGTAGGGCTATTGCTAGGCGCAAGAgcagcggcggcggcggcggGGAAGA
CGAGGACGATGAGTGA
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Coding sequence (CDS) from alignment at tig00000007_pilon:948492..949207+

>Gchil7404.t1 ID=Gchil7404.t1|Name=Gchil7404.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00000007_pilon:948492..949207+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAAACTATCGCAACGCTTCCAAGACCTATCGTACTCCACGGCGCCC
GTATGAGAAAGAACGTCTGGACTCCGAGCTGCAGCTCGCCGGAAAATATG
GGCTTCGCAACAAGCGTGAAATCTGGCGTGTGCAACTGGTGCTGTCCAAG
ATCCGATCTGCTGCTCGTGAACTTCTCACTCTAGAAGAGAAGGATCCGCG
CCGCATTTTTGAAGGCAATGCTCTGCTGCGTCGTTTAACTCGTCTTGGGC
TCTTGGACGAATCGCGACAAGCTCTTGACTACGTGCTTTCCCTCAAAGTT
CAGGATTTCTTGGAACGCCGTCTCCAGACGCAGGTTGTCAAGCTTGGTTT
GGCAAAATCTATTCACCATGCCCGCTGCCTGATCAAGCAGCGTCACATTC
GAGTCGGGAAGCAGCTTGTTAACGTTCCCTCCTTCACTGTGCGAGTCGAT
TCGCAGAAGCATATTGACTTCGCTCTCACCTCTCCGTTTGGTGGTGGACG
GCCTGGTCGTGTCAAGCGTAGGGCTATTGCTAGGCGCAAGAgcagcggcg
gcggcggcggGGAAGACGAGGACGATGAGTGA
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