Gchil7303.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7303.t1
Unique NameGchil7303.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:1001072..1002075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7303Gchil7303Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 1001072..1002075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7303.t1Gchil7303.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 1001072..1002075 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7303.t1.stop1Gchil7303.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 1001072..1001074 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7303.t1.CDS1Gchil7303.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 1001072..1001117 -
Gchil7303.t1.CDS2Gchil7303.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 1001240..1001889 -
Gchil7303.t1.CDS3Gchil7303.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 1001998..1002075 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7303.t1.exon1Gchil7303.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 1001072..1001117 -
Gchil7303.t1.exon2Gchil7303.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 1001240..1001889 -
Gchil7303.t1.exon3Gchil7303.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 1001998..1002075 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7303.t1.intron1Gchil7303.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 1001118..1001239 -
Gchil7303.t1.intron2Gchil7303.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 1001890..1001997 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7303.t1.start1Gchil7303.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 1002073..1002075 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7303.t1 ID=Gchil7303.t1|Name=Gchil7303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=258bp
MWSSNQTGRASALVCALPNFPPSSRLVAARVDTDHSTGKGKFALTGCYAS
KNDSFGIDATYAVDDANTVYATYGVTDEKLLSLGVETGFTAFSRRGTVDL
TYSPPRDAAVLKTAVRQGMFKVSAFFSFDNFKKDYVKSHSERYEVEAKIS
STENLKIAFDGKSRAARIKLSHKLDSKNKLDAEYQHLAAGSKAVVFTLKH
VYSKAHTFSLGFNYGANKCKAEWDCRTDNGPWTITTNFPFDASPLSGDLS
IKRRFDF*
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spliced messenger RNA

>Gchil7303.t1 ID=Gchil7303.t1|Name=Gchil7303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00004441_pilon:1001072..1002075- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTCAAGCAACCAAACGGGTCGCGCCTCCGCGCTGGTGTGTGCGCT
GCCCAACTTCCCGCCCTCCTCACGTTTGGTGGCGGCCCGAGTCGATACCG
ACCATTCCACGGGCAAGGGAAAGTTTGCCCTCACCGGCTGCTACGCCTCA
AAGAACGATTCTTTTGGGATTGATGCCACCTATGCCGTCGATGATGCTAA
TACCGTCTATGCCACCTACGGCGTCACCGATGAAAAACTCCTCTCTCTCG
GCGTTGAGACCGGCTTCACCGCTTTCTCGCGTCGCGGAACTGTGGACCTT
ACGTACAGCCCGCCGCGCGATGCCGCCGTATTGAAAACCGCCGTGCGCCA
AGGCATGTTCAAAGTTTCCGCGTTTTTCTCCTTTGATAACTTCAAGAAAG
ACTATGTGAAGAGCCACTCAGAGCGCTACGAGGTGGAAGCTAAGATCAGT
AGCACGGAGAACCTCAAGATTGCCTTTGATGGAAAGTCTCGCGCCGCCAG
GATCAAGTTGTCTCACAAGCTCGACTCCAAGAACAAGCTCGATGCCGAGT
ACCAACATCTTGCTGCTGGTTCCAAGGCTGTCGTTTTCACTTTGAAACAT
GTGTATTCCAAGGCGCATACCTTCTCGCTCGGCTTCAATTATGGCGCTAA
CAAGTGCAAAGCTGAATGGGATTGCAGGACTGACAACGGTCCTTGGACCA
TCACAACCAACTTCCCCTTCGATGCAAGCCCATTATCCGGAGACTTATCT
ATCAAACGTCGATTTGATTTCTAG
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protein sequence of Gchil7303.t1

>Gchil7303.t1 ID=Gchil7303.t1|Name=Gchil7303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=258bp
MWSSNQTGRASALVCALPNFPPSSRLVAARVDTDHSTGKGKFALTGCYAS
KNDSFGIDATYAVDDANTVYATYGVTDEKLLSLGVETGFTAFSRRGTVDL
TYSPPRDAAVLKTAVRQGMFKVSAFFSFDNFKKDYVKSHSERYEVEAKIS
STENLKIAFDGKSRAARIKLSHKLDSKNKLDAEYQHLAAGSKAVVFTLKH
VYSKAHTFSLGFNYGANKCKAEWDCRTDNGPWTITTNFPFDASPLSGDLS
IKRRFDF*
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mRNA from alignment at tig00004441_pilon:1001072..1002075-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7303.t1 ID=Gchil7303.t1|Name=Gchil7303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1004bp|location=Sequence derived from alignment at tig00004441_pilon:1001072..1002075- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGTCAAGCAACCAAACGGGTCGCGCCTCCGCGCTGGTGTGTGCGCT
GCCCAACTTCCCGCCCTCCTCACGTTTGGTATGCTTTTGATCCTCCCCAT
CATCGTCGTTTTCGCGCTTTGCTTTTCTTCCACATCGCCCGCCCCCATTC
TGACATCCGAGCTTTTCTGTTCCACACGCGCTTCAGGTGGCGGCCCGAGT
CGATACCGACCATTCCACGGGCAAGGGAAAGTTTGCCCTCACCGGCTGCT
ACGCCTCAAAGAACGATTCTTTTGGGATTGATGCCACCTATGCCGTCGAT
GATGCTAATACCGTCTATGCCACCTACGGCGTCACCGATGAAAAACTCCT
CTCTCTCGGCGTTGAGACCGGCTTCACCGCTTTCTCGCGTCGCGGAACTG
TGGACCTTACGTACAGCCCGCCGCGCGATGCCGCCGTATTGAAAACCGCC
GTGCGCCAAGGCATGTTCAAAGTTTCCGCGTTTTTCTCCTTTGATAACTT
CAAGAAAGACTATGTGAAGAGCCACTCAGAGCGCTACGAGGTGGAAGCTA
AGATCAGTAGCACGGAGAACCTCAAGATTGCCTTTGATGGAAAGTCTCGC
GCCGCCAGGATCAAGTTGTCTCACAAGCTCGACTCCAAGAACAAGCTCGA
TGCCGAGTACCAACATCTTGCTGCTGGTTCCAAGGCTGTCGTTTTCACTT
TGAAACATGTGTATTCCAAGGCGCATACCTTCTCGCTCGGCTTCAATTAT
GGCGCTAACAAGTGCAAAGCTGAATGGGATTGCAGGACTGACAACGGTCC
TTGGACCATCACAACCAACTTCCCCTTCGATGCAAGGTAAGTTCTAATGC
CACTTGTTTACATTTCGACCACAAGCTTGTCATTCGCTTTGCCTGTGTTC
TCTTTTCGCTAACCACCTCATCGTGCCTTGCAAAACTACCTATGAATGCG
CTACTCAGCCCATTATCCGGAGACTTATCTATCAAACGTCGATTTGATTT
CTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:1001072..1002075-

>Gchil7303.t1 ID=Gchil7303.t1|Name=Gchil7303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00004441_pilon:1001072..1002075- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGTCAAGCAACCAAACGGGTCGCGCCTCCGCGCTGGTGTGTGCGCT
GCCCAACTTCCCGCCCTCCTCACGTTTGGTGGCGGCCCGAGTCGATACCG
ACCATTCCACGGGCAAGGGAAAGTTTGCCCTCACCGGCTGCTACGCCTCA
AAGAACGATTCTTTTGGGATTGATGCCACCTATGCCGTCGATGATGCTAA
TACCGTCTATGCCACCTACGGCGTCACCGATGAAAAACTCCTCTCTCTCG
GCGTTGAGACCGGCTTCACCGCTTTCTCGCGTCGCGGAACTGTGGACCTT
ACGTACAGCCCGCCGCGCGATGCCGCCGTATTGAAAACCGCCGTGCGCCA
AGGCATGTTCAAAGTTTCCGCGTTTTTCTCCTTTGATAACTTCAAGAAAG
ACTATGTGAAGAGCCACTCAGAGCGCTACGAGGTGGAAGCTAAGATCAGT
AGCACGGAGAACCTCAAGATTGCCTTTGATGGAAAGTCTCGCGCCGCCAG
GATCAAGTTGTCTCACAAGCTCGACTCCAAGAACAAGCTCGATGCCGAGT
ACCAACATCTTGCTGCTGGTTCCAAGGCTGTCGTTTTCACTTTGAAACAT
GTGTATTCCAAGGCGCATACCTTCTCGCTCGGCTTCAATTATGGCGCTAA
CAAGTGCAAAGCTGAATGGGATTGCAGGACTGACAACGGTCCTTGGACCA
TCACAACCAACTTCCCCTTCGATGCAAGCCCATTATCCGGAGACTTATCT
ATCAAACGTCGATTTGATTTCTAG
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