Gchil7302.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7302.t1
Unique NameGchil7302.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:1000297..1001022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr46182
PFAMsACT_7
Max annot lvl2759|Eukaryota
Evalue5.75e-11
EggNOG OGsCOG3603@1|root,2S7H6@2759|Eukaryota
DescriptionACT domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7302Gchil7302Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 1000297..1001022 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7302.t1.start1Gchil7302.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 1000297..1000299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7302.t1.CDS1Gchil7302.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 1000297..1001022 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7302.t1.exon1Gchil7302.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 1000297..1001022 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7302.t1.stop1Gchil7302.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 1001020..1001022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7302.t1Gchil7302.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 1000297..1001022 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7302.t1 ID=Gchil7302.t1|Name=Gchil7302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=242bp
MTNIRADPSCARIGLVFGLVLAGMIPPPPALLSFYSRFCILLQEGLKYAG
VPSSSYFIYEPEMLHTTVATFRSFLRPPPPNPELFVSEWKGLLMRASRRS
GWPVAGTYVLTLYEAKVQDNGVGTFLYVDKLRVIERMRECIRAEMREKLS
QTSLRYIECINGDIKIPNIVHSTMLRWRGSPSISRSQLQNVFSEAFVLTK
AVEYPVDIPLSSVSLLREWKPYMMKKTCVAQLWPPENKDTN*
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spliced messenger RNA

>Gchil7302.t1 ID=Gchil7302.t1|Name=Gchil7302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00004441_pilon:1000297..1001022+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTAACATTCGCGCAGATCCCTCTTGCGCCAGAATTGGACTGGTTTT
CGGCCTTGTGTTGGCTGGTATGATTCCGCCGCCACCGGCCCTCTTATCTT
TCTACTCGAGGTTTTGTATACTTTTGCAAGAGGGCCTGAAATATGCTGGA
GTACCCTCATCCTCCTATTTTATCTATGAGCCTGAAATGTTGCACACAAC
TGTGGCAACATTTCGATCGTTCCTAAGACCTCCACCTCCAAACCCGGAGC
TTTTTGTAAGCGAATGGAAGGGTCTGTTAATGCGCGCTTCTCGACGTTCA
GGGTGGCCTGTGGCAGGAACCTATGTTTTGACGCTATATGAGGCAAAAGT
GCAAGACAATGGCGTAGGTACGTTTCTATACGTTGACAAGCTACGAGTCA
TAGAAAGAATGCGAGAATGTATTCGGGCAGAGATGAGAGAGAAACTGTCG
CAAACAAGTCTGCGATATATTGAATGCATCAATGGGGACATTAAGATCCC
AAACATCGTCCATTCGACAATGCTACGATGGAGGGGGTCCCCAAGCATCT
CTCGTTCACAGTTACAAAACGTTTTTTCTGAAGCTTTTGTACTGACGAAG
GCCGTTGAGTACCCCGTAGACATTCCGCTAAGTTCGGTTTCCCTGCTTCG
CGAGTGGAAGCCGTACATGATGAAGAAGACATGCGTGGCGCAGCTGTGGC
CGCCGGAAAACAAGGATACTAATTAA
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protein sequence of Gchil7302.t1

>Gchil7302.t1 ID=Gchil7302.t1|Name=Gchil7302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=242bp
MTNIRADPSCARIGLVFGLVLAGMIPPPPALLSFYSRFCILLQEGLKYAG
VPSSSYFIYEPEMLHTTVATFRSFLRPPPPNPELFVSEWKGLLMRASRRS
GWPVAGTYVLTLYEAKVQDNGVGTFLYVDKLRVIERMRECIRAEMREKLS
QTSLRYIECINGDIKIPNIVHSTMLRWRGSPSISRSQLQNVFSEAFVLTK
AVEYPVDIPLSSVSLLREWKPYMMKKTCVAQLWPPENKDTN*
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mRNA from alignment at tig00004441_pilon:1000297..1001022+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7302.t1 ID=Gchil7302.t1|Name=Gchil7302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00004441_pilon:1000297..1001022+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTAACATTCGCGCAGATCCCTCTTGCGCCAGAATTGGACTGGTTTT
CGGCCTTGTGTTGGCTGGTATGATTCCGCCGCCACCGGCCCTCTTATCTT
TCTACTCGAGGTTTTGTATACTTTTGCAAGAGGGCCTGAAATATGCTGGA
GTACCCTCATCCTCCTATTTTATCTATGAGCCTGAAATGTTGCACACAAC
TGTGGCAACATTTCGATCGTTCCTAAGACCTCCACCTCCAAACCCGGAGC
TTTTTGTAAGCGAATGGAAGGGTCTGTTAATGCGCGCTTCTCGACGTTCA
GGGTGGCCTGTGGCAGGAACCTATGTTTTGACGCTATATGAGGCAAAAGT
GCAAGACAATGGCGTAGGTACGTTTCTATACGTTGACAAGCTACGAGTCA
TAGAAAGAATGCGAGAATGTATTCGGGCAGAGATGAGAGAGAAACTGTCG
CAAACAAGTCTGCGATATATTGAATGCATCAATGGGGACATTAAGATCCC
AAACATCGTCCATTCGACAATGCTACGATGGAGGGGGTCCCCAAGCATCT
CTCGTTCACAGTTACAAAACGTTTTTTCTGAAGCTTTTGTACTGACGAAG
GCCGTTGAGTACCCCGTAGACATTCCGCTAAGTTCGGTTTCCCTGCTTCG
CGAGTGGAAGCCGTACATGATGAAGAAGACATGCGTGGCGCAGCTGTGGC
CGCCGGAAAACAAGGATACTAATTAA
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Coding sequence (CDS) from alignment at tig00004441_pilon:1000297..1001022+

>Gchil7302.t1 ID=Gchil7302.t1|Name=Gchil7302.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00004441_pilon:1000297..1001022+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTAACATTCGCGCAGATCCCTCTTGCGCCAGAATTGGACTGGTTTT
CGGCCTTGTGTTGGCTGGTATGATTCCGCCGCCACCGGCCCTCTTATCTT
TCTACTCGAGGTTTTGTATACTTTTGCAAGAGGGCCTGAAATATGCTGGA
GTACCCTCATCCTCCTATTTTATCTATGAGCCTGAAATGTTGCACACAAC
TGTGGCAACATTTCGATCGTTCCTAAGACCTCCACCTCCAAACCCGGAGC
TTTTTGTAAGCGAATGGAAGGGTCTGTTAATGCGCGCTTCTCGACGTTCA
GGGTGGCCTGTGGCAGGAACCTATGTTTTGACGCTATATGAGGCAAAAGT
GCAAGACAATGGCGTAGGTACGTTTCTATACGTTGACAAGCTACGAGTCA
TAGAAAGAATGCGAGAATGTATTCGGGCAGAGATGAGAGAGAAACTGTCG
CAAACAAGTCTGCGATATATTGAATGCATCAATGGGGACATTAAGATCCC
AAACATCGTCCATTCGACAATGCTACGATGGAGGGGGTCCCCAAGCATCT
CTCGTTCACAGTTACAAAACGTTTTTTCTGAAGCTTTTGTACTGACGAAG
GCCGTTGAGTACCCCGTAGACATTCCGCTAAGTTCGGTTTCCCTGCTTCG
CGAGTGGAAGCCGTACATGATGAAGAAGACATGCGTGGCGCAGCTGTGGC
CGCCGGAAAACAAGGATACTAATTAA
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