Gchil7287.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7287.t1
Unique NameGchil7287.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:962128..963108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS047CT
PFAMsRibosomal_L21p
Max annot lvl2759|Eukaryota
KEGG koko:K02888
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
GOsGO:0000003,GO:0000313,GO:0000315,GO:0000741,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006950,GO:0006996,GO:0006997,GO:0007275,GO:0008150,GO:0009266,GO:0009409,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009553,GO:0009555,GO:0009559,GO:0009561,GO:0009566,GO:0009567,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009668,GO:0009790,GO:0009791,GO:0009793,GO:0009941,GO:0009987,GO:0010027,GO:0010154,GO:0010197,GO:0015934,GO:0016043,GO:0019953,GO:0022414,GO:0030154,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0048229,GO:0048284,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051704,GO:0061024,GO:0061458,GO:0070013,GO:0071840,GO:0097159,GO:0098798,GO:1901363,GO:1990904
Evalue4.74e-23
EggNOG OGsCOG0261@1|root,KOG1686@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7287Gchil7287Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 962128..963108 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7287.t1.start1Gchil7287.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 962128..962130 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7287.t1.CDS1Gchil7287.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 962128..963108 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7287.t1.exon1Gchil7287.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 962128..963108 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7287.t1.stop1Gchil7287.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 963106..963108 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7287.t1Gchil7287.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 962128..963108 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7287.t1 ID=Gchil7287.t1|Name=Gchil7287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=327bp
MSSSTTMPKGSETHLPPASRRATRLEALFRSFETRLISVCKRNQVAYHFH
ATQMLRTAWRSLFSSAITNNRKVLWSTPSTTPPFSQIHTTSFLAQLSPLY
STFGGRGRQICSSVHVSNEYHADDQESIPIESSVQIERVPLPPGLSNDKF
GLFEVLESSQDLRHVKGRNAVVGIHGPTELWLPKGIEGHGASGGIWAAIA
TSGTQYKVMKGDVLYTNRYAGEVNTQIAFDSVLAIGAFDWTLFGRPAIRH
AKVLATIEEQTKSAKVMVTKFKKRKGYLKRKGHRQPITRFRIDQIVYEWP
DAEMIRPYDVPFHPNRPPLPNHRRPL*
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spliced messenger RNA

>Gchil7287.t1 ID=Gchil7287.t1|Name=Gchil7287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00004441_pilon:962128..963108+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCTTCCACAACCATGCCCAAAGGCTCCGAGACGCATCTTCCTCC
TGCCTCGCGTCGCGCTACTCGTCTCGAAGCGCTCTTCCGGAGCTTCGAAA
CACGCCTCATTTCCGTGTGCAAACGGAATCAAGTTGCATACCACTTTCAC
GCCACCCAGATGTTGCGAACGGCGTGGCGCTCTCTTTTCTCAAGCGCGAT
CACCAACAACAGAAAAGTGCTGTGGTCAACGCCGTCGACGACGCCACCAT
TCTCCCAGATTCACACCACATCATTTCTAGCGCAGCTCAGCCCGCTTTAC
TCTACGTTCGGTGGCCGTGGACGTCAAATCTGTTCTTCTGTGCATGTTTC
AAATGAATACCACGCAGACGATCAGGAATCGATTCCCATTGAAAGCTCAG
TGCAAATAGAAAGAGTTCCACTTCCGCCGGGGCTCAGCAATGATAAATTC
GGGTTGTTTGAAGTGCTGGAAAGCAGTCAAGACTTGCGCCACGTCAAGGG
AAGAAATGCAGTTGTGGGAATACATGGTCCTACCGAGCTGTGGCTTCCGA
AGGGAATAGAGGGACACGGAGCAAGTGGCGGAATATGGGCTGCAATCGCA
ACGTCTGGCACGCAGTATAAAGTCATGAAAGGTGATGTGCTATACACAAA
CAGATACGCTGGGGAAGTGAACACACAAATTGCGTTCGACTCGGTTTTAG
CTATTGGCGCTTTCGACTGGACTTTGTTTGGACGTCCTGCTATTCGGCAC
GCCAAAGTGCTTGCTACTATTGAAGAACAGACGAAAAGTGCAAAAGTTAT
GGTGACCAAGTTCAAGAAGCGAAAAGGGTATTTGAAAAGAAAGGGCCATC
GACAACCGATTACTAGATTTAGGATTGACCAAATTGTTTACGAATGGCCG
GATGCTGAAATGATCAGACCTTATGACGTCCCCTTCCATCCGAACAGACC
GCCACTGCCAAACCATCGACGTCCGCTGTGA
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protein sequence of Gchil7287.t1

>Gchil7287.t1 ID=Gchil7287.t1|Name=Gchil7287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=327bp
MSSSTTMPKGSETHLPPASRRATRLEALFRSFETRLISVCKRNQVAYHFH
ATQMLRTAWRSLFSSAITNNRKVLWSTPSTTPPFSQIHTTSFLAQLSPLY
STFGGRGRQICSSVHVSNEYHADDQESIPIESSVQIERVPLPPGLSNDKF
GLFEVLESSQDLRHVKGRNAVVGIHGPTELWLPKGIEGHGASGGIWAAIA
TSGTQYKVMKGDVLYTNRYAGEVNTQIAFDSVLAIGAFDWTLFGRPAIRH
AKVLATIEEQTKSAKVMVTKFKKRKGYLKRKGHRQPITRFRIDQIVYEWP
DAEMIRPYDVPFHPNRPPLPNHRRPL*
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mRNA from alignment at tig00004441_pilon:962128..963108+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7287.t1 ID=Gchil7287.t1|Name=Gchil7287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00004441_pilon:962128..963108+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCTTCCACAACCATGCCCAAAGGCTCCGAGACGCATCTTCCTCC
TGCCTCGCGTCGCGCTACTCGTCTCGAAGCGCTCTTCCGGAGCTTCGAAA
CACGCCTCATTTCCGTGTGCAAACGGAATCAAGTTGCATACCACTTTCAC
GCCACCCAGATGTTGCGAACGGCGTGGCGCTCTCTTTTCTCAAGCGCGAT
CACCAACAACAGAAAAGTGCTGTGGTCAACGCCGTCGACGACGCCACCAT
TCTCCCAGATTCACACCACATCATTTCTAGCGCAGCTCAGCCCGCTTTAC
TCTACGTTCGGTGGCCGTGGACGTCAAATCTGTTCTTCTGTGCATGTTTC
AAATGAATACCACGCAGACGATCAGGAATCGATTCCCATTGAAAGCTCAG
TGCAAATAGAAAGAGTTCCACTTCCGCCGGGGCTCAGCAATGATAAATTC
GGGTTGTTTGAAGTGCTGGAAAGCAGTCAAGACTTGCGCCACGTCAAGGG
AAGAAATGCAGTTGTGGGAATACATGGTCCTACCGAGCTGTGGCTTCCGA
AGGGAATAGAGGGACACGGAGCAAGTGGCGGAATATGGGCTGCAATCGCA
ACGTCTGGCACGCAGTATAAAGTCATGAAAGGTGATGTGCTATACACAAA
CAGATACGCTGGGGAAGTGAACACACAAATTGCGTTCGACTCGGTTTTAG
CTATTGGCGCTTTCGACTGGACTTTGTTTGGACGTCCTGCTATTCGGCAC
GCCAAAGTGCTTGCTACTATTGAAGAACAGACGAAAAGTGCAAAAGTTAT
GGTGACCAAGTTCAAGAAGCGAAAAGGGTATTTGAAAAGAAAGGGCCATC
GACAACCGATTACTAGATTTAGGATTGACCAAATTGTTTACGAATGGCCG
GATGCTGAAATGATCAGACCTTATGACGTCCCCTTCCATCCGAACAGACC
GCCACTGCCAAACCATCGACGTCCGCTGTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:962128..963108+

>Gchil7287.t1 ID=Gchil7287.t1|Name=Gchil7287.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00004441_pilon:962128..963108+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCTTCCACAACCATGCCCAAAGGCTCCGAGACGCATCTTCCTCC
TGCCTCGCGTCGCGCTACTCGTCTCGAAGCGCTCTTCCGGAGCTTCGAAA
CACGCCTCATTTCCGTGTGCAAACGGAATCAAGTTGCATACCACTTTCAC
GCCACCCAGATGTTGCGAACGGCGTGGCGCTCTCTTTTCTCAAGCGCGAT
CACCAACAACAGAAAAGTGCTGTGGTCAACGCCGTCGACGACGCCACCAT
TCTCCCAGATTCACACCACATCATTTCTAGCGCAGCTCAGCCCGCTTTAC
TCTACGTTCGGTGGCCGTGGACGTCAAATCTGTTCTTCTGTGCATGTTTC
AAATGAATACCACGCAGACGATCAGGAATCGATTCCCATTGAAAGCTCAG
TGCAAATAGAAAGAGTTCCACTTCCGCCGGGGCTCAGCAATGATAAATTC
GGGTTGTTTGAAGTGCTGGAAAGCAGTCAAGACTTGCGCCACGTCAAGGG
AAGAAATGCAGTTGTGGGAATACATGGTCCTACCGAGCTGTGGCTTCCGA
AGGGAATAGAGGGACACGGAGCAAGTGGCGGAATATGGGCTGCAATCGCA
ACGTCTGGCACGCAGTATAAAGTCATGAAAGGTGATGTGCTATACACAAA
CAGATACGCTGGGGAAGTGAACACACAAATTGCGTTCGACTCGGTTTTAG
CTATTGGCGCTTTCGACTGGACTTTGTTTGGACGTCCTGCTATTCGGCAC
GCCAAAGTGCTTGCTACTATTGAAGAACAGACGAAAAGTGCAAAAGTTAT
GGTGACCAAGTTCAAGAAGCGAAAAGGGTATTTGAAAAGAAAGGGCCATC
GACAACCGATTACTAGATTTAGGATTGACCAAATTGTTTACGAATGGCCG
GATGCTGAAATGATCAGACCTTATGACGTCCCCTTCCATCCGAACAGACC
GCCACTGCCAAACCATCGACGTCCGCTGTGA
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