Gchil7266.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7266.t1
Unique NameGchil7266.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:909383..909990 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707278.1
Preferred nameNdufS4
PFAMsETC_C1_NDUFA4
Max annot lvl2759|Eukaryota
KEGG koko:K03937,ko:K13174
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko03013,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map03013,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143,M00405,M00406
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009409,GO:0009628,GO:0009631,GO:0009987,GO:0010876,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0019915,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033036,GO:0034641,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0050136,GO:0050896,GO:0050897,GO:0051179,GO:0051235,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070469,GO:0071704,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
Evalue1.05e-49
EggNOG OGsKOG3389@1|root,KOG3389@2759|Eukaryota
Descriptionoxidoreductase activity, acting on NAD(P)H
COG categoryU
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7266Gchil7266Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 909383..909990 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7266.t1Gchil7266.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 909383..909990 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7266.t1.start1Gchil7266.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 909383..909385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7266.t1.CDS1Gchil7266.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 909383..909516 +
Gchil7266.t1.CDS2Gchil7266.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 909599..909695 +
Gchil7266.t1.CDS3Gchil7266.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 909772..909990 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7266.t1.exon1Gchil7266.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 909383..909516 +
Gchil7266.t1.exon2Gchil7266.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 909599..909695 +
Gchil7266.t1.exon3Gchil7266.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 909772..909990 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7266.t1.intron1Gchil7266.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 909517..909598 +
Gchil7266.t1.intron2Gchil7266.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 909696..909771 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7266.t1.stop1Gchil7266.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 909988..909990 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7266.t1 ID=Gchil7266.t1|Name=Gchil7266.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=150bp
MKTVGRLAPRNTRMMSSNPDHSVNVLSGIPEKHAARRVRIYKPAKVATQQ
GRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAI
HYAERNGYEFVTAEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGDSK*
back to top

spliced messenger RNA

>Gchil7266.t1 ID=Gchil7266.t1|Name=Gchil7266.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=450bp|location=Sequence derived from alignment at tig00004441_pilon:909383..909990+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACCGTTGGTCGATTAGCACCTCGTAATACTCGCATGATGTCATC
GAACCCGGACCATTCGGTTAATGTTCTGTCTGGCATTCCAGAAAAGCATG
CCGCGAGGCGTGTACGTATATACAAACCAGCAAAAGTTGCTACTCAACAA
GGCCGCGGAAGCCTCACGCAAATGTGGAAAATGTCATTCGAGAAGCTCGA
AGGTGATGATCGATGGACTAATCCGCTAATGGGATGGACTAGTACCGGTG
ATCCACTTTCAAACATGGGAATGTCTTTCCCAAGCAAAGAAGCTGCAATC
CATTACGCGGAGCGCAATGGTTACGAGTTTGTTACTGCTGAGCCCGCAGA
AGAGAAGCAACATGTAAAGCCAATCGCACCATTTAAGCGTTCTATGGTGC
ACCACTGGCGTCATAGTGGAACTCCGGTCTACGACGGTGATAGTAAATaa
back to top

protein sequence of Gchil7266.t1

>Gchil7266.t1 ID=Gchil7266.t1|Name=Gchil7266.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=150bp
MKTVGRLAPRNTRMMSSNPDHSVNVLSGIPEKHAARRVRIYKPAKVATQQ
GRGSLTQMWKMSFEKLEGDDRWTNPLMGWTSTGDPLSNMGMSFPSKEAAI
HYAERNGYEFVTAEPAEEKQHVKPIAPFKRSMVHHWRHSGTPVYDGDSK*
back to top

mRNA from alignment at tig00004441_pilon:909383..909990+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7266.t1 ID=Gchil7266.t1|Name=Gchil7266.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=608bp|location=Sequence derived from alignment at tig00004441_pilon:909383..909990+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACCGTTGGTCGATTAGCACCTCGTAATACTCGCATGATGTCATC
GAACCCGGACCATTCGGTTAATGTTCTGTCTGGCATTCCAGAAAAGCATG
CCGCGAGGCGTGTACGTATATACAAACCAGCAAAGTAAGTCTACTCACGC
AGAGTGATTCTTTCGCACACTCATGACGATTCTAACGAAGTGAGTTTGAT
AATTATGGTGCGCTAGAGTTGCTACTCAACAAGGCCGCGGAAGCCTCACG
CAAATGTGGAAAATGTCATTCGAGAAGCTCGAAGGTGATGATCGATGGAC
TAATCCGCTAATGGTACGTGAGCTTTAGAAGTTTCGGGGGGCACATCGCT
ATCGTTTCGTAATCTGACTTGCAATACCTTAAATCAAAGGGATGGACTAG
TACCGGTGATCCACTTTCAAACATGGGAATGTCTTTCCCAAGCAAAGAAG
CTGCAATCCATTACGCGGAGCGCAATGGTTACGAGTTTGTTACTGCTGAG
CCCGCAGAAGAGAAGCAACATGTAAAGCCAATCGCACCATTTAAGCGTTC
TATGGTGCACCACTGGCGTCATAGTGGAACTCCGGTCTACGACGGTGATA
GTAAATaa
back to top

Coding sequence (CDS) from alignment at tig00004441_pilon:909383..909990+

>Gchil7266.t1 ID=Gchil7266.t1|Name=Gchil7266.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=450bp|location=Sequence derived from alignment at tig00004441_pilon:909383..909990+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACCGTTGGTCGATTAGCACCTCGTAATACTCGCATGATGTCATC
GAACCCGGACCATTCGGTTAATGTTCTGTCTGGCATTCCAGAAAAGCATG
CCGCGAGGCGTGTACGTATATACAAACCAGCAAAAGTTGCTACTCAACAA
GGCCGCGGAAGCCTCACGCAAATGTGGAAAATGTCATTCGAGAAGCTCGA
AGGTGATGATCGATGGACTAATCCGCTAATGGGATGGACTAGTACCGGTG
ATCCACTTTCAAACATGGGAATGTCTTTCCCAAGCAAAGAAGCTGCAATC
CATTACGCGGAGCGCAATGGTTACGAGTTTGTTACTGCTGAGCCCGCAGA
AGAGAAGCAACATGTAAAGCCAATCGCACCATTTAAGCGTTCTATGGTGC
ACCACTGGCGTCATAGTGGAACTCCGGTCTACGACGGTGATAGTAAATaa
back to top