Gchil7174.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7174.t1
Unique NameGchil7174.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length171
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:421149..422432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo134318
Max annot lvl2759|Eukaryota
Evalue6.2e-16
EggNOG OGsCOG2801@1|root,2QT1S@2759|Eukaryota
Descriptiontransposition
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7174Gchil7174Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 421149..422432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7174.t1Gchil7174.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 421149..422432 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7174.t1.stop1Gchil7174.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 421149..421151 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7174.t1.CDS1Gchil7174.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 421149..421526 -
Gchil7174.t1.CDS2Gchil7174.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 422298..422432 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7174.t1.exon1Gchil7174.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 421149..421526 -
Gchil7174.t1.exon2Gchil7174.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 422298..422432 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7174.t1.intron1Gchil7174.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 421527..422297 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7174.t1.start1Gchil7174.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 422430..422432 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7174.t1 ID=Gchil7174.t1|Name=Gchil7174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=171bp
MSQQGLTELETLLIEFSDTIKLKLDDKLPADIEPLRVNLKQDAVPVLETG
YAKAGGSRKKKTIAKDSFLDLGWVVKHTTAFKDLQKQLKEATRLAQPDPE
KVLCLHTDASDKHWATCATQCDQSERSKSVEEEVHQPLAFLSRSFSQLEE
NWSTSERKAFAVVQAFRKLG*
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spliced messenger RNA

>Gchil7174.t1 ID=Gchil7174.t1|Name=Gchil7174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=513bp|location=Sequence derived from alignment at tig00004441_pilon:421149..422432- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCAGCAAGGCCTGACCGAACTCGAAACCCTGTTGATAGAGTTCAG
CGATACCATCAAGCTCAAACTTGATGATAAATTGCCCGCAGATATTGAAC
CGCTTCGAGTCAACTTGAAACAGGACGCTGTGCCTGTACTTGAAACTGGG
TACGCAAAGGCAGGCGGAAGCCGAAAGAAAAAGACTATCGCTAAAGATTC
CTTTCTCGACTTAGGATGGGTTGTCAAGCACACGACTGCGTTCAAGGACC
TACAGAAACAACTGAAAGAAGCAACACGCCTCGCACAACCCGACCCGGAA
AAGGTATTATGCTTGCACACCGATGCTTCCGACAAACATTGGGCCACCTG
TGCGACACAGTGTGACCAATCGGAGCGATCGAAGTCTGTCGAAGAAGAAG
TCCACCAGCCTCTGGCTTTCCTTAGCAGATCGTTTTCCCAACTAGAAGAG
AACTGGTCAACATCCGAACGCAAGGCATTTGCCGTTGTTCAAGCTTTTCG
CAAGCTTGGCTGA
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protein sequence of Gchil7174.t1

>Gchil7174.t1 ID=Gchil7174.t1|Name=Gchil7174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=171bp
MSQQGLTELETLLIEFSDTIKLKLDDKLPADIEPLRVNLKQDAVPVLETG
YAKAGGSRKKKTIAKDSFLDLGWVVKHTTAFKDLQKQLKEATRLAQPDPE
KVLCLHTDASDKHWATCATQCDQSERSKSVEEEVHQPLAFLSRSFSQLEE
NWSTSERKAFAVVQAFRKLG*
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mRNA from alignment at tig00004441_pilon:421149..422432-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7174.t1 ID=Gchil7174.t1|Name=Gchil7174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00004441_pilon:421149..422432- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCAGCAAGGCCTGACCGAACTCGAAACCCTGTTGATAGAGTTCAG
CGATACCATCAAGCTCAAACTTGATGATAAATTGCCCGCAGATATTGAAC
CGCTTCGAGTCAACTTGAAACAGGACGCTGTGCCTGTCGGCGCCAACAAA
CGTGACTATCCTCCGCGTAAAAAGGAATTCATGACGCGCTACATCAACCA
GCTGCTTTAGCTCTGCTTCGTTAAGAAAGCGACTTGAACTGAATGGGTAT
CTGCTCCACTCATCGTACCCAAGCGGCCTCTTACTATGTACAGGTTGACT
ATTGACTATCTCCCAGTCAAAAGCGCGACGATTCAAACGTTCTAGCCGAT
TCCGAACATTGAAGCTGAACTTGTCGACGCTCGTGGAGCTAAATCGTTAG
CCGCCATTGACTTCTGTAGCGGCTATTGGCAAGCACCGTTTGATCACGAA
AGCCAACCGCTATTCGCTTACATGACGCCAGATGGTGTCGTGATGCCAAC
CCGAACCATGCAAAGTGGCACCAACTCGGCAGCCATTTTCCAAGAAACGG
TTGCTGACTGCTTCACCGAACTGCGTGAGGATTTCAAGGCCTGGATCGAC
GAATTTATGATTTTCGCGACAGATGAAGGACATCTGCTTCGCATACTTCG
CCGCTTCTTCAAAATATATCGTGAACGCCGCCTGAACGTTTCTCTATTCA
AGTCTGATTTCTCCCTCACCGAAGCTACTTGGTGTTGACGCATCATCTAC
GCTGATGGTGTAAGGTTCAACCCGAAGAACTTATCAGGCCTCAAGGATTG
CGATTTTCCCCAAACCGCTGGAGAGCTCTGTTAATACGTCCATGGCGAAA
GCTGGGTCTCCACCAGCATCACTGGTTTCTCGTAACGCGTCGCCATACTT
CGTCAGGTACTTGAAACTGGGTACGCAAAGGCAGGCGGAAGCCGAAAGAA
AAAGACTATCGCTAAAGATTCCTTTCTCGACTTAGGATGGGTTGTCAAGC
ACACGACTGCGTTCAAGGACCTACAGAAACAACTGAAAGAAGCAACACGC
CTCGCACAACCCGACCCGGAAAAGGTATTATGCTTGCACACCGATGCTTC
CGACAAACATTGGGCCACCTGTGCGACACAGTGTGACCAATCGGAGCGAT
CGAAGTCTGTCGAAGAAGAAGTCCACCAGCCTCTGGCTTTCCTTAGCAGA
TCGTTTTCCCAACTAGAAGAGAACTGGTCAACATCCGAACGCAAGGCATT
TGCCGTTGTTCAAGCTTTTCGCAAGCTTGGCTGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:421149..422432-

>Gchil7174.t1 ID=Gchil7174.t1|Name=Gchil7174.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=513bp|location=Sequence derived from alignment at tig00004441_pilon:421149..422432- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCAGCAAGGCCTGACCGAACTCGAAACCCTGTTGATAGAGTTCAG
CGATACCATCAAGCTCAAACTTGATGATAAATTGCCCGCAGATATTGAAC
CGCTTCGAGTCAACTTGAAACAGGACGCTGTGCCTGTACTTGAAACTGGG
TACGCAAAGGCAGGCGGAAGCCGAAAGAAAAAGACTATCGCTAAAGATTC
CTTTCTCGACTTAGGATGGGTTGTCAAGCACACGACTGCGTTCAAGGACC
TACAGAAACAACTGAAAGAAGCAACACGCCTCGCACAACCCGACCCGGAA
AAGGTATTATGCTTGCACACCGATGCTTCCGACAAACATTGGGCCACCTG
TGCGACACAGTGTGACCAATCGGAGCGATCGAAGTCTGTCGAAGAAGAAG
TCCACCAGCCTCTGGCTTTCCTTAGCAGATCGTTTTCCCAACTAGAAGAG
AACTGGTCAACATCCGAACGCAAGGCATTTGCCGTTGTTCAAGCTTTTCG
CAAGCTTGGCTGA
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