Gchil7116.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7116.t1
Unique NameGchil7116.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:240279..241394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7116Gchil7116Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 240279..241394 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7116.t1.stop1Gchil7116.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 240279..240281 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7116.t1.CDS1Gchil7116.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 240279..241394 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7116.t1.exon1Gchil7116.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 240279..241394 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7116.t1.start1Gchil7116.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 241392..241394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7116.t1Gchil7116.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 240279..241394 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7116.t1 ID=Gchil7116.t1|Name=Gchil7116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=372bp
MQNSRPPYLPPPAPPSLPPPPAIAQLLPPVNFYSIPQFPAAAPSFDQFPC
PPQLSQNSFGNVNGHHHPSFQNAAPVHVQHSTQFQPRYTHQRRWNRRQSV
RVQGGNPRGYKLSGNQNASSMEISSKQDDKRKARNGQIPAQDVLTTLDAK
LPGPSPADIEAWVTARKANWPSKANVERKEAAALKRHKAGALDTSSSQPP
QGSRRLDCSQRDLVTSRNVFCRLNAKLPGSSPHEIEAWVAARKANWPSRT
NVERKLAAEAEKKNETKSKMKEVNSSSGAMAKLEDYSSSEEEEEFSNRRQ
KKPTARRGKRTRRRQGGRGKDGLSRRRVETKTPEPKPTLLRMLLEREIRQ
EQSVLLQAFRYIITKKASETA*
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spliced messenger RNA

>Gchil7116.t1 ID=Gchil7116.t1|Name=Gchil7116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00004441_pilon:240279..241394- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAATTCTCGGCCTCCCTATCTCCCACCGCCAGCCCCGCCATCTTT
ACCTCCACCACCTGCTATAGCTCAACTTCTCCCTCCAGTCAACTTCTATT
CGATTCCACAATTCCCAGCTGCGGCTCCAAGCTTTGACCAATTTCCATGT
CCTCCTCAACTATCTCAGAACAGTTTTGGTAATGTGAACGGGCACCATCA
CCCCTCGTTCCAAAACGCGGCACCCGTACACGTACAGCACAGCACTCAAT
TTCAGCCAAGATATACCCACCAGCGTAGATGGAACCGTCGCCAGTCAGTT
CGAGTCCAAGGCGGGAATCCTCGAGGATATAAACTGTCCGGAAATCAAAA
TGCCTCGAGTATGGAAATTTCTTCGAAACAGGACGACAAAAGAAAAGCTA
GAAATGGCCAGATCCCTGCACAAGATGTACTTACAACGTTGGACGCCAAG
CTACCTGGACCATCACCTGCTGACATAGAGGCCTGGGTAACTGCAAGGAA
AGCTAATTGGCCAAGTAAAGCAAATGTTGAGAGAAAAGAAGCCGCCGCTT
TGAAGCGTCATAAAGCTGGGGCGCTTGACACTTCATCTAGCCAACCACCA
CAAGGTAGCCGCAGACTAGACTGTAGTCAGCGAGATTTGGTTACATCTCG
AAATGTCTTTTGCCGACTCAACGCCAAGCTGCCGGGCTCTTCCCCACACG
AAATTGAAGCTTGGGTGGCGGCCCGAAAAGCGAATTGGCCCAGTCGTACT
AACGTTGAGCGGAAACTAGCAGCCGAAGCTGAAAAAAAGAACGAGACGAA
ATCAAAGATGAAAGAGGTGAACAGCAGTTCAGGAGCAATGGCAAAGCTTG
AGGACTACAGCAGTAGCGAAGAAGAAGAAGAATTTTCCAACAGGAGACAG
AAGAAACCAACCGCGAGGCGAGGGAAGCGAACACGGAGGAGACAAGGGGG
GCGGGGCAAAGACGGTCTTTCAAGGAGACGGGTTGAAACAAAGACTCCAG
AACCTAAGCCAACATTACTGAGAATGCTTCTTGAGAGAGAAATCAGACAA
GAGCAGTCAGTTCTACTACAAGCATTTCGTTACATCATAACCAAGAAAGC
GTCTGAAACAGCATGA
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protein sequence of Gchil7116.t1

>Gchil7116.t1 ID=Gchil7116.t1|Name=Gchil7116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=372bp
MQNSRPPYLPPPAPPSLPPPPAIAQLLPPVNFYSIPQFPAAAPSFDQFPC
PPQLSQNSFGNVNGHHHPSFQNAAPVHVQHSTQFQPRYTHQRRWNRRQSV
RVQGGNPRGYKLSGNQNASSMEISSKQDDKRKARNGQIPAQDVLTTLDAK
LPGPSPADIEAWVTARKANWPSKANVERKEAAALKRHKAGALDTSSSQPP
QGSRRLDCSQRDLVTSRNVFCRLNAKLPGSSPHEIEAWVAARKANWPSRT
NVERKLAAEAEKKNETKSKMKEVNSSSGAMAKLEDYSSSEEEEEFSNRRQ
KKPTARRGKRTRRRQGGRGKDGLSRRRVETKTPEPKPTLLRMLLEREIRQ
EQSVLLQAFRYIITKKASETA*
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mRNA from alignment at tig00004441_pilon:240279..241394-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7116.t1 ID=Gchil7116.t1|Name=Gchil7116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00004441_pilon:240279..241394- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGAATTCTCGGCCTCCCTATCTCCCACCGCCAGCCCCGCCATCTTT
ACCTCCACCACCTGCTATAGCTCAACTTCTCCCTCCAGTCAACTTCTATT
CGATTCCACAATTCCCAGCTGCGGCTCCAAGCTTTGACCAATTTCCATGT
CCTCCTCAACTATCTCAGAACAGTTTTGGTAATGTGAACGGGCACCATCA
CCCCTCGTTCCAAAACGCGGCACCCGTACACGTACAGCACAGCACTCAAT
TTCAGCCAAGATATACCCACCAGCGTAGATGGAACCGTCGCCAGTCAGTT
CGAGTCCAAGGCGGGAATCCTCGAGGATATAAACTGTCCGGAAATCAAAA
TGCCTCGAGTATGGAAATTTCTTCGAAACAGGACGACAAAAGAAAAGCTA
GAAATGGCCAGATCCCTGCACAAGATGTACTTACAACGTTGGACGCCAAG
CTACCTGGACCATCACCTGCTGACATAGAGGCCTGGGTAACTGCAAGGAA
AGCTAATTGGCCAAGTAAAGCAAATGTTGAGAGAAAAGAAGCCGCCGCTT
TGAAGCGTCATAAAGCTGGGGCGCTTGACACTTCATCTAGCCAACCACCA
CAAGGTAGCCGCAGACTAGACTGTAGTCAGCGAGATTTGGTTACATCTCG
AAATGTCTTTTGCCGACTCAACGCCAAGCTGCCGGGCTCTTCCCCACACG
AAATTGAAGCTTGGGTGGCGGCCCGAAAAGCGAATTGGCCCAGTCGTACT
AACGTTGAGCGGAAACTAGCAGCCGAAGCTGAAAAAAAGAACGAGACGAA
ATCAAAGATGAAAGAGGTGAACAGCAGTTCAGGAGCAATGGCAAAGCTTG
AGGACTACAGCAGTAGCGAAGAAGAAGAAGAATTTTCCAACAGGAGACAG
AAGAAACCAACCGCGAGGCGAGGGAAGCGAACACGGAGGAGACAAGGGGG
GCGGGGCAAAGACGGTCTTTCAAGGAGACGGGTTGAAACAAAGACTCCAG
AACCTAAGCCAACATTACTGAGAATGCTTCTTGAGAGAGAAATCAGACAA
GAGCAGTCAGTTCTACTACAAGCATTTCGTTACATCATAACCAAGAAAGC
GTCTGAAACAGCATGA
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Coding sequence (CDS) from alignment at tig00004441_pilon:240279..241394-

>Gchil7116.t1 ID=Gchil7116.t1|Name=Gchil7116.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00004441_pilon:240279..241394- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGAATTCTCGGCCTCCCTATCTCCCACCGCCAGCCCCGCCATCTTT
ACCTCCACCACCTGCTATAGCTCAACTTCTCCCTCCAGTCAACTTCTATT
CGATTCCACAATTCCCAGCTGCGGCTCCAAGCTTTGACCAATTTCCATGT
CCTCCTCAACTATCTCAGAACAGTTTTGGTAATGTGAACGGGCACCATCA
CCCCTCGTTCCAAAACGCGGCACCCGTACACGTACAGCACAGCACTCAAT
TTCAGCCAAGATATACCCACCAGCGTAGATGGAACCGTCGCCAGTCAGTT
CGAGTCCAAGGCGGGAATCCTCGAGGATATAAACTGTCCGGAAATCAAAA
TGCCTCGAGTATGGAAATTTCTTCGAAACAGGACGACAAAAGAAAAGCTA
GAAATGGCCAGATCCCTGCACAAGATGTACTTACAACGTTGGACGCCAAG
CTACCTGGACCATCACCTGCTGACATAGAGGCCTGGGTAACTGCAAGGAA
AGCTAATTGGCCAAGTAAAGCAAATGTTGAGAGAAAAGAAGCCGCCGCTT
TGAAGCGTCATAAAGCTGGGGCGCTTGACACTTCATCTAGCCAACCACCA
CAAGGTAGCCGCAGACTAGACTGTAGTCAGCGAGATTTGGTTACATCTCG
AAATGTCTTTTGCCGACTCAACGCCAAGCTGCCGGGCTCTTCCCCACACG
AAATTGAAGCTTGGGTGGCGGCCCGAAAAGCGAATTGGCCCAGTCGTACT
AACGTTGAGCGGAAACTAGCAGCCGAAGCTGAAAAAAAGAACGAGACGAA
ATCAAAGATGAAAGAGGTGAACAGCAGTTCAGGAGCAATGGCAAAGCTTG
AGGACTACAGCAGTAGCGAAGAAGAAGAAGAATTTTCCAACAGGAGACAG
AAGAAACCAACCGCGAGGCGAGGGAAGCGAACACGGAGGAGACAAGGGGG
GCGGGGCAAAGACGGTCTTTCAAGGAGACGGGTTGAAACAAAGACTCCAG
AACCTAAGCCAACATTACTGAGAATGCTTCTTGAGAGAGAAATCAGACAA
GAGCAGTCAGTTCTACTACAAGCATTTCGTTACATCATAACCAAGAAAGC
GTCTGAAACAGCATGA
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