Gchil7075.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7075.t1
Unique NameGchil7075.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:464298..464794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704279.1
Preferred nameCOPB1
PFAMsAdaptin_N,Coatamer_beta_C,Coatomer_b_Cpla
Max annot lvl2759|Eukaryota
KEGG koko:K17301
GOsGO:0000139,GO:0000902,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006955,GO:0007275,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010883,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030133,GO:0030134,GO:0030135,GO:0030137,GO:0030141,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030667,GO:0030903,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0034613,GO:0036230,GO:0042119,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048475,GO:0048513,GO:0048568,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060429,GO:0061053,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0099503,GO:0101002,GO:0101003,GO:1905952
Evalue4.55e-41
EggNOG OGsCOG5096@1|root,KOG1058@2759|Eukaryota
Descriptionintra-Golgi vesicle-mediated transport
COG categoryU
BRITEko00000,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7075Gchil7075Gracilaria chilensis NLEC103_M9 malegenetig00000131_pilon 461951..464794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7075.t1Gchil7075.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000131_pilon 464298..464794 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7075.t1.stop1Gchil7075.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000131_pilon 464298..464300 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7075.t1.CDS1Gchil7075.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 464298..464342 -
Gchil7075.t1.CDS2Gchil7075.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 464429..464794 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7075.t1.exon1Gchil7075.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 464298..464342 -
Gchil7075.t1.exon2Gchil7075.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 464429..464794 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7075.t1.intron1Gchil7075.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000131_pilon 464343..464428 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7075.t1.start1Gchil7075.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000131_pilon 464792..464794 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7075.t1 ID=Gchil7075.t1|Name=Gchil7075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=137bp
MTSALERQCTLLLQPGIQGDDLNNLRKELETGDGEAKQEALKRAIYMHLS
GEPLPGMLMLVIRFVLPHEDTHLRKLGLYYLEIADKHDSDGKMLPEMILV
CNMVRNELVHPNEYTRGVALRFKKRRSSHSHYIREV*
back to top

spliced messenger RNA

>Gchil7075.t1 ID=Gchil7075.t1|Name=Gchil7075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00000131_pilon:464298..464794- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCTGCGCTAGAGAGGCAGTGTACCTTGCTGCTACAGCCCGGCAT
TCAAGGCGATGACCTTAACAACCTGAGGAAGGAGCTTGAGACTGGAGATG
GCGAGGCAAAGCAAGAAGCTCTCAAGCGAGCTATCTACATGCACCTGAGC
GGCGAGCCTCTGCCTGGCATGCTCATGCTCGTCATTCGATTTGTCCTGCC
TCATGAGGACACCCATCTGCGAAAGCTTGGACTGTACTATTTAGAGATTG
CCGATAAGCATGACTCAGACGGAAAAATGCTCCCGGAGATGATACTGGTT
TGCAACATGGTGCGCAATGAGCTTGTACATCCCAACGAATATACGCGCGG
TGTGGCTCTTCGTTTCAAGAAACGCCGTTCAAGCCATTCTCACTATATTC
GAGAAGTTTGA
back to top

protein sequence of Gchil7075.t1

>Gchil7075.t1 ID=Gchil7075.t1|Name=Gchil7075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=137bp
MTSALERQCTLLLQPGIQGDDLNNLRKELETGDGEAKQEALKRAIYMHLS
GEPLPGMLMLVIRFVLPHEDTHLRKLGLYYLEIADKHDSDGKMLPEMILV
CNMVRNELVHPNEYTRGVALRFKKRRSSHSHYIREV*
back to top

mRNA from alignment at tig00000131_pilon:464298..464794-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7075.t1 ID=Gchil7075.t1|Name=Gchil7075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=497bp|location=Sequence derived from alignment at tig00000131_pilon:464298..464794- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCTGCGCTAGAGAGGCAGTGTACCTTGCTGCTACAGCCCGGCAT
TCAAGGCGATGACCTTAACAACCTGAGGAAGGAGCTTGAGACTGGAGATG
GCGAGGCAAAGCAAGAAGCTCTCAAGCGAGCTATCTACATGCACCTGAGC
GGCGAGCCTCTGCCTGGCATGCTCATGCTCGTCATTCGATTTGTCCTGCC
TCATGAGGACACCCATCTGCGAAAGCTTGGACTGTACTATTTAGAGATTG
CCGATAAGCATGACTCAGACGGAAAAATGCTCCCGGAGATGATACTGGTT
TGCAACATGGTGCGCAATGAGCTTGTACATCCCAACGAATATACGCGCGG
TGTGGCTCTTCGTTTCGTGTGTAAGATTCACGATGCCGAAATTTTGGAGC
CCTTGATCCCTGCAATCCGACAGAACCTTGAGCATCGTCACTCTTTCGTC
AGAAGAAACGCCGTTCAAGCCATTCTCACTATATTCGAGAAGTTTGA
back to top

Coding sequence (CDS) from alignment at tig00000131_pilon:464298..464794-

>Gchil7075.t1 ID=Gchil7075.t1|Name=Gchil7075.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=411bp|location=Sequence derived from alignment at tig00000131_pilon:464298..464794- (Gracilaria chilensis NLEC103_M9 male)
ATGACGTCTGCGCTAGAGAGGCAGTGTACCTTGCTGCTACAGCCCGGCAT
TCAAGGCGATGACCTTAACAACCTGAGGAAGGAGCTTGAGACTGGAGATG
GCGAGGCAAAGCAAGAAGCTCTCAAGCGAGCTATCTACATGCACCTGAGC
GGCGAGCCTCTGCCTGGCATGCTCATGCTCGTCATTCGATTTGTCCTGCC
TCATGAGGACACCCATCTGCGAAAGCTTGGACTGTACTATTTAGAGATTG
CCGATAAGCATGACTCAGACGGAAAAATGCTCCCGGAGATGATACTGGTT
TGCAACATGGTGCGCAATGAGCTTGTACATCCCAACGAATATACGCGCGG
TGTGGCTCTTCGTTTCAAGAAACGCCGTTCAAGCCATTCTCACTATATTC
GAGAAGTTTGA
back to top