Gchil7060.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7060.t1
Unique NameGchil7060.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000131_piloncontigtig00000131_pilon:322510..323274 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28737.XP_006891256.1
Preferred nameGPANK1
PFAMsAnk_2,Ank_4,G-patch
Max annot lvl33208|Metazoa
Evalue0.000713
EggNOG OGsKOG2384@1|root,KOG2384@2759|Eukaryota,39U7G@33154|Opisthokonta,3BHX5@33208|Metazoa,3CXBZ@33213|Bilateria,48BQS@7711|Chordata,493TX@7742|Vertebrata,3JA2Q@40674|Mammalia,3527T@311790|Afrotheria
DescriptionG patch domain and ankyrin repeat-containing protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7060Gchil7060Gracilaria chilensis NLEC103_M9 malegenetig00000131_pilon 322510..323274 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7060.t1.stop1Gchil7060.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000131_pilon 322510..322512 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7060.t1.CDS1Gchil7060.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000131_pilon 322510..323274 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7060.t1.exon1Gchil7060.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000131_pilon 322510..323274 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7060.t1.start1Gchil7060.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000131_pilon 323272..323274 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7060.t1Gchil7060.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000131_pilon 322510..323274 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7060.t1 ID=Gchil7060.t1|Name=Gchil7060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=255bp
MGGTSSRRRKQRNSRPRRPSRSPSPRRSALPPSVSTLAFDDRRITSGPGF
ELLVKSGWQPGQTLGAPSTPPARAAPIPIVVRRGRAGVGALTVPNSHSHS
HSLPSDFCVASPLHQRSHRAPRPTHMANMHIFDPLRPRCQFDPTHVVPNL
KALNKHEKSCPANPRRTSSPRIIVVPSAAPFTSSPPPARHSVPVPASPTS
FGNQFSHLASSTASSSSSSLCSQVDSVLSDLSSLTAENDHPEHVPFVLDH
PHAL*
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spliced messenger RNA

>Gchil7060.t1 ID=Gchil7060.t1|Name=Gchil7060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000131_pilon:322510..323274- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGCACCTCCTCCCGCCGCCGCAAGCAGCGTAACAGCCGTCCCCG
TCGTCCGTCGCGCTCCCCGTCGCCTCGCCGCAGCGCCCTTCCCCCCTCCG
TCTCCACGCTTGCCTTCGACGACCGTCGCATCACCTCCGGCCCCGGCTTC
GAGCTACTCGTCAAGTCCGGCTGGCAGCCAGGTCAGACGCTTGGCGCGCC
CTCCACCCCGCCCGCTCGCGCCGCCCCCATCCCCATCGTCGTCCGTCGTG
GCCGTGCCGGTGTCGGTGCACTTACCGTCCCAAATTCACACTCACACTCA
CACTCACTTCCTTCCGACTTTTGCGTCGCGTCCCCGCTTCATCAGCGCTC
CCATCGCGCCCCCCGCCCTACCCACATGGCAAACATGCATATCTTTGACC
CGTTGCGCCCGCGTTGTCAGTTCGACCCCACGCACGTCGTCCCCAACCTC
AAGGCACTCAACAAACACGAAAAGAGCTGTCCGGCCAATCCGCGCCGCAC
CTCGTCTCCGCGCATCATCGTCGTGCCCTCTGCTGCACCGTTCACCTCGT
CGCCCCCGCCCGCCCGTCACTCGGTGCCCGTGCCGGCGAGCCCGACCAGT
TTTGGAAATCAGTTCAGTCACCTCGCGTCCTCCACCGCCTCTTCGTCCTC
ATCGTCGCTCTGCTCCCAAGTCGACTCGGTGCTGTCGGACCTGTCCAGCC
TTACCGCCGAGAACGACCATCCTGAACACGTCCCCTTCGTCCTGGACCAT
CCACACGCGCTGTAG
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protein sequence of Gchil7060.t1

>Gchil7060.t1 ID=Gchil7060.t1|Name=Gchil7060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=255bp
MGGTSSRRRKQRNSRPRRPSRSPSPRRSALPPSVSTLAFDDRRITSGPGF
ELLVKSGWQPGQTLGAPSTPPARAAPIPIVVRRGRAGVGALTVPNSHSHS
HSLPSDFCVASPLHQRSHRAPRPTHMANMHIFDPLRPRCQFDPTHVVPNL
KALNKHEKSCPANPRRTSSPRIIVVPSAAPFTSSPPPARHSVPVPASPTS
FGNQFSHLASSTASSSSSSLCSQVDSVLSDLSSLTAENDHPEHVPFVLDH
PHAL*
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mRNA from alignment at tig00000131_pilon:322510..323274-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7060.t1 ID=Gchil7060.t1|Name=Gchil7060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000131_pilon:322510..323274- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGGCACCTCCTCCCGCCGCCGCAAGCAGCGTAACAGCCGTCCCCG
TCGTCCGTCGCGCTCCCCGTCGCCTCGCCGCAGCGCCCTTCCCCCCTCCG
TCTCCACGCTTGCCTTCGACGACCGTCGCATCACCTCCGGCCCCGGCTTC
GAGCTACTCGTCAAGTCCGGCTGGCAGCCAGGTCAGACGCTTGGCGCGCC
CTCCACCCCGCCCGCTCGCGCCGCCCCCATCCCCATCGTCGTCCGTCGTG
GCCGTGCCGGTGTCGGTGCACTTACCGTCCCAAATTCACACTCACACTCA
CACTCACTTCCTTCCGACTTTTGCGTCGCGTCCCCGCTTCATCAGCGCTC
CCATCGCGCCCCCCGCCCTACCCACATGGCAAACATGCATATCTTTGACC
CGTTGCGCCCGCGTTGTCAGTTCGACCCCACGCACGTCGTCCCCAACCTC
AAGGCACTCAACAAACACGAAAAGAGCTGTCCGGCCAATCCGCGCCGCAC
CTCGTCTCCGCGCATCATCGTCGTGCCCTCTGCTGCACCGTTCACCTCGT
CGCCCCCGCCCGCCCGTCACTCGGTGCCCGTGCCGGCGAGCCCGACCAGT
TTTGGAAATCAGTTCAGTCACCTCGCGTCCTCCACCGCCTCTTCGTCCTC
ATCGTCGCTCTGCTCCCAAGTCGACTCGGTGCTGTCGGACCTGTCCAGCC
TTACCGCCGAGAACGACCATCCTGAACACGTCCCCTTCGTCCTGGACCAT
CCACACGCGCTGTAG
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Coding sequence (CDS) from alignment at tig00000131_pilon:322510..323274-

>Gchil7060.t1 ID=Gchil7060.t1|Name=Gchil7060.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00000131_pilon:322510..323274- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGGCACCTCCTCCCGCCGCCGCAAGCAGCGTAACAGCCGTCCCCG
TCGTCCGTCGCGCTCCCCGTCGCCTCGCCGCAGCGCCCTTCCCCCCTCCG
TCTCCACGCTTGCCTTCGACGACCGTCGCATCACCTCCGGCCCCGGCTTC
GAGCTACTCGTCAAGTCCGGCTGGCAGCCAGGTCAGACGCTTGGCGCGCC
CTCCACCCCGCCCGCTCGCGCCGCCCCCATCCCCATCGTCGTCCGTCGTG
GCCGTGCCGGTGTCGGTGCACTTACCGTCCCAAATTCACACTCACACTCA
CACTCACTTCCTTCCGACTTTTGCGTCGCGTCCCCGCTTCATCAGCGCTC
CCATCGCGCCCCCCGCCCTACCCACATGGCAAACATGCATATCTTTGACC
CGTTGCGCCCGCGTTGTCAGTTCGACCCCACGCACGTCGTCCCCAACCTC
AAGGCACTCAACAAACACGAAAAGAGCTGTCCGGCCAATCCGCGCCGCAC
CTCGTCTCCGCGCATCATCGTCGTGCCCTCTGCTGCACCGTTCACCTCGT
CGCCCCCGCCCGCCCGTCACTCGGTGCCCGTGCCGGCGAGCCCGACCAGT
TTTGGAAATCAGTTCAGTCACCTCGCGTCCTCCACCGCCTCTTCGTCCTC
ATCGTCGCTCTGCTCCCAAGTCGACTCGGTGCTGTCGGACCTGTCCAGCC
TTACCGCCGAGAACGACCATCCTGAACACGTCCCCTTCGTCCTGGACCAT
CCACACGCGCTGTAG
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